Wall clock time and date at job start Fri Apr 10 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47410 * 2 1 4 4 N 1.46901 * 109.46800 * 119.99635 * 2 1 3 5 5 C 1.46902 * 110.99943 * 274.99911 * 4 2 1 6 6 C 1.50697 * 109.47153 * 179.97438 * 5 4 2 7 7 C 1.38289 * 119.92635 * 89.99867 * 6 5 4 8 8 C 1.38100 * 120.07703 * 179.97438 * 7 6 5 9 9 C 1.38913 * 119.92613 * 359.97438 * 8 7 6 10 10 N 1.39673 * 120.07616 * 179.97438 * 9 8 7 11 11 C 1.46498 * 120.00285 * 0.02562 * 10 9 8 12 12 C 1.46506 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47289 * 89.99927 * 12 10 9 14 14 H 1.07994 * 119.99399 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 10 16 16 N 1.31518 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46762 * 60.00562 * 17 15 13 19 19 H 1.48506 * 109.46725 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00217 * 17 15 13 21 21 C 1.38912 * 119.84952 * 0.25994 * 9 8 7 22 22 C 1.38107 * 119.92242 * 359.48694 * 21 9 8 23 23 C 1.50699 * 109.47264 * 239.99308 * 2 1 3 24 24 C 1.38669 * 120.41875 * 99.72309 * 23 2 1 25 25 C 1.38624 * 118.42321 * 179.78051 * 24 23 2 26 26 C 1.38225 * 119.15759 * 0.52295 * 25 24 23 27 27 N 1.31855 * 120.76504 * 359.71533 * 26 25 24 28 28 C 1.31879 * 121.72498 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46654 * 60.00368 * 1 2 3 30 30 H 1.08994 * 109.47410 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47346 * 300.00858 * 1 2 3 32 32 H 1.00903 * 111.00465 * 151.04491 * 4 2 1 33 33 H 1.09003 * 109.47406 * 60.00150 * 5 4 2 34 34 H 1.08995 * 109.47297 * 299.99986 * 5 4 2 35 35 H 1.07999 * 119.95876 * 359.95851 * 7 6 5 36 36 H 1.07996 * 120.04085 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.46923 * 270.00426 * 11 10 9 38 38 H 1.08997 * 109.46694 * 29.99558 * 11 10 9 39 39 H 1.08995 * 109.47258 * 149.99834 * 11 10 9 40 40 H 1.09001 * 109.47060 * 210.00378 * 12 10 9 41 41 H 1.09004 * 109.47073 * 329.99866 * 12 10 9 42 42 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 43 43 H 1.08000 * 120.03937 * 179.72354 * 21 9 8 44 44 H 1.08005 * 119.96225 * 180.25637 * 22 21 9 45 45 H 1.08005 * 120.78881 * 0.02651 * 24 23 2 46 46 H 1.07997 * 120.42308 * 180.22012 * 25 24 23 47 47 H 1.08006 * 119.61606 * 179.74647 * 26 25 24 48 48 H 1.07997 * 119.61580 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5871 -0.5216 3.5561 7 6 3.9441 -0.5734 3.8176 8 6 4.4101 -1.2541 4.9251 9 6 3.5139 -1.8869 5.7773 10 7 3.9818 -2.5768 6.8980 11 6 5.4190 -2.6332 7.1763 12 6 3.0352 -3.2440 7.7954 13 6 2.8139 -4.6599 7.3292 14 1 3.3273 -5.0262 6.4526 15 6 1.9568 -5.4879 8.0226 16 7 1.3320 -5.0419 9.0905 17 14 1.6819 -7.2428 7.4444 18 1 2.9737 -7.9750 7.4537 19 1 0.7225 -7.9190 8.3542 20 1 1.1304 -7.2290 6.0658 21 6 2.1519 -1.8371 5.5091 22 6 1.6923 -1.1501 4.4026 23 6 2.0324 -0.7105 -1.2304 24 6 2.4568 0.0127 -2.3347 25 6 2.9153 -0.6829 -3.4426 26 6 2.9238 -2.0649 -3.4140 27 7 2.5079 -2.7200 -2.3480 28 6 2.0701 -2.0911 -1.2746 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.9172 -1.1205 1.0289 33 1 1.0870 0.6165 2.5525 34 1 2.7588 1.0463 2.1182 35 1 4.6403 -0.0810 3.1547 36 1 5.4699 -1.2945 5.1285 37 1 5.8501 -3.5057 6.6855 38 1 5.8979 -1.7301 6.7981 39 1 5.5782 -2.7056 8.2521 40 1 3.4393 -3.2537 8.8077 41 1 2.0869 -2.7066 7.7879 42 1 0.7287 -5.6243 9.5781 43 1 1.4528 -2.3317 6.1671 44 1 0.6331 -1.1074 4.1957 45 1 2.4345 1.0925 -2.3303 46 1 3.2569 -0.1521 -4.3189 47 1 3.2756 -2.6144 -4.2747 48 1 1.7379 -2.6618 -0.4200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025365380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:20 Heat of formation + Delta-G solvation = 50.706530 kcal Electronic energy + Delta-G solvation = -26218.332030 eV Core-core repulsion = 22658.133772 eV Total energy + Delta-G solvation = -3560.198258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22164 -40.42638 -38.21269 -36.93618 -34.81932 -33.69367 -32.76345 -31.87342 -30.89853 -29.80262 -29.52098 -27.13029 -25.85073 -24.79786 -24.42074 -23.40058 -22.97968 -21.53767 -21.01317 -18.64981 -18.30263 -17.95519 -17.40104 -17.04106 -16.89554 -16.19132 -15.73007 -15.55298 -15.49606 -15.27741 -15.12950 -14.80859 -14.56416 -14.33958 -14.26197 -13.99892 -13.92726 -13.48763 -13.42337 -13.17417 -13.13153 -13.06351 -12.88728 -12.66220 -12.53427 -12.45804 -12.23050 -11.99801 -11.82015 -11.75905 -11.39582 -10.71968 -10.64224 -10.41559 -10.33163 -9.90117 -9.65135 -9.29916 -8.36340 -7.80256 -6.37524 0.18352 0.37693 0.72861 0.85302 1.36310 1.38675 1.46647 2.34019 2.63702 2.87547 3.01842 3.05791 3.46327 3.52054 3.81576 4.01642 4.07871 4.10443 4.14550 4.20358 4.24424 4.40654 4.44937 4.47312 4.54629 4.65108 4.67362 4.72944 4.75236 4.86756 4.88825 4.93654 4.97517 5.02590 5.04038 5.13730 5.19090 5.21551 5.31169 5.34276 5.40576 5.59932 5.67929 5.70493 5.81290 5.94570 6.07250 6.15460 6.25134 6.46164 6.50182 6.82527 6.94271 7.08856 7.34184 8.82686 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.002566 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.642061 B =10907.814008 C =11779.569910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.134 3.866 3 H 0.070 0.930 4 N -0.690 5.690 5 C 0.123 3.877 6 C -0.158 4.158 7 C -0.061 4.061 8 C -0.218 4.218 9 C 0.212 3.788 10 N -0.633 5.633 11 C 0.100 3.900 12 C 0.267 3.733 13 C -0.542 4.542 14 H 0.046 0.954 15 C 0.013 3.987 16 N -0.926 5.926 17 Si 0.959 3.041 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.275 1.275 21 C -0.218 4.218 22 C -0.054 4.054 23 C -0.142 4.142 24 C -0.072 4.072 25 C -0.167 4.167 26 C 0.078 3.922 27 N -0.520 5.520 28 C 0.098 3.902 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.341 0.659 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.010 0.990 41 H 0.011 0.989 42 H 0.267 0.733 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.160 0.840 46 H 0.166 0.834 47 H 0.173 0.827 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 15.532 -23.347 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.025 3.975 3 H 0.088 0.912 4 N -0.322 5.322 5 C -0.005 4.005 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.241 4.241 9 C 0.107 3.893 10 N -0.341 5.341 11 C -0.043 4.043 12 C 0.145 3.855 13 C -0.581 4.581 14 H 0.065 0.935 15 C -0.186 4.186 16 N -0.566 5.566 17 Si 0.784 3.216 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.200 1.200 21 C -0.240 4.240 22 C -0.073 4.073 23 C -0.144 4.144 24 C -0.098 4.098 25 C -0.187 4.187 26 C -0.078 4.078 27 N -0.229 5.229 28 C -0.059 4.059 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.139 0.861 45 H 0.178 0.822 46 H 0.183 0.817 47 H 0.190 0.810 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.358 14.213 -22.839 27.109 hybrid contribution 0.272 -0.176 0.339 0.469 sum 3.630 14.037 -22.500 26.766 Atomic orbital electron populations 1.21785 0.93390 1.01983 1.02072 1.20376 0.96082 0.95539 0.85530 0.91177 1.60619 1.33936 1.33667 1.03956 1.20668 1.00824 0.92124 0.86924 1.19519 0.93047 1.04895 0.98616 1.20917 0.95039 0.96616 0.95476 1.20776 0.98934 1.06119 0.98223 1.18234 0.93217 0.90529 0.87311 1.46961 1.06660 1.54877 1.25557 1.21584 0.80373 1.01338 1.01011 1.18782 0.87855 0.90860 0.87970 1.21735 1.26280 0.98190 1.11845 0.93521 1.25758 0.95150 1.02802 0.94880 1.70023 1.29543 1.38109 1.18888 0.85590 0.78303 0.79486 0.78219 1.19377 1.20218 1.19987 1.20794 0.94321 1.07146 1.01783 1.20795 0.99621 0.94462 0.92457 1.21032 1.01006 0.94918 0.97464 1.21852 0.94297 1.01815 0.91865 1.22464 1.00524 0.95299 1.00369 1.23270 0.95332 0.93072 0.96176 1.67714 1.11183 1.42684 1.01358 1.22692 0.95090 0.92433 0.95672 0.91387 0.93400 0.91871 0.83992 0.90185 0.93068 0.84076 0.85069 0.94399 0.89697 0.92015 0.97182 0.97123 0.92358 0.88893 0.86059 0.82229 0.81661 0.81013 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.40 71.98 0.68 -1.44 16 2 C 0.13 2.09 2.84 44.17 0.13 2.22 16 3 H 0.07 0.86 7.69 -2.39 -0.02 0.84 16 4 N -0.69 -13.77 5.70 -499.47 -2.85 -16.62 16 5 C 0.12 2.47 5.61 85.56 0.48 2.95 16 6 C -0.16 -4.39 5.40 -19.84 -0.11 -4.49 16 7 C -0.06 -1.68 9.69 22.25 0.22 -1.46 16 8 C -0.22 -7.15 9.21 22.40 0.21 -6.94 16 9 C 0.21 8.74 6.55 38.22 0.25 8.99 16 10 N -0.63 -28.19 2.99 -726.55 -2.17 -30.36 16 11 C 0.10 3.53 10.23 127.77 1.31 4.84 16 12 C 0.27 14.29 4.95 85.63 0.42 14.71 16 13 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 14 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 15 C 0.01 0.77 5.46 84.65 0.46 1.23 16 16 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 17 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 21 C -0.22 -9.25 9.20 22.40 0.21 -9.05 16 22 C -0.05 -1.85 9.69 22.25 0.22 -1.64 16 23 C -0.14 -2.38 4.72 -19.78 -0.09 -2.47 16 24 C -0.07 -0.89 9.82 22.46 0.22 -0.67 16 25 C -0.17 -1.95 10.11 22.36 0.23 -1.72 16 26 C 0.08 1.29 11.18 84.69 0.95 2.23 16 27 N -0.52 -12.15 10.36 -195.85 -2.03 -14.18 16 28 C 0.10 2.16 10.19 84.67 0.86 3.02 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.98 7.45 -2.39 -0.02 0.96 16 32 H 0.34 7.18 7.99 -89.69 -0.72 6.46 16 33 H 0.08 1.55 7.38 -2.39 -0.02 1.54 16 34 H 0.05 0.84 8.00 -2.39 -0.02 0.82 16 35 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.13 3.74 6.14 -2.91 -0.02 3.72 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 2.40 6.20 -2.39 -0.01 2.39 16 39 H 0.06 2.12 7.89 -2.39 -0.02 2.10 16 40 H 0.01 0.57 7.89 -2.39 -0.02 0.55 16 41 H 0.01 0.62 6.21 -2.38 -0.01 0.61 16 42 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.09 4.59 6.15 -2.91 -0.02 4.57 16 44 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 45 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 46 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 47 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 48 H 0.15 3.58 7.72 -2.91 -0.02 3.55 16 Total: -1.00 -68.91 394.38 2.36 -66.55 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.24 Total: 22.94 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 6.86 Total: -20.63 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -6.76 Total: -116.03 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.91 2.36 -66.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025365380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.252 kcal (2) G-P(sol) polarization free energy of solvation -68.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds