Wall clock time and date at job start Fri Apr 10 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99537 * 2 1 4 4 H 1.48499 * 109.47044 * 240.00006 * 3 2 1 5 5 H 1.48497 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46800 * 120.00471 * 3 2 1 7 7 C 1.37876 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47017 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99895 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99879 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00060 * 179.97438 * 11 10 9 14 14 N 1.46900 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.46848 * 110.99689 * 170.00242 * 14 13 11 16 16 C 1.53039 * 109.52102 * 185.83603 * 15 14 13 17 17 C 1.53116 * 109.28151 * 300.81855 * 16 15 14 18 18 C 1.53000 * 109.52285 * 177.55754 * 17 16 15 19 19 N 1.46906 * 109.47072 * 175.00311 * 18 17 16 20 20 C 1.47020 * 110.99867 * 293.63551 * 19 18 17 21 21 C 1.53097 * 109.25663 * 177.60414 * 20 19 18 22 22 O 1.43021 * 109.25605 * 56.85187 * 21 20 19 23 23 C 1.43021 * 113.73613 * 301.32802 * 22 21 20 24 24 C 1.47009 * 111.00252 * 170.00094 * 19 18 17 25 25 C 1.53124 * 109.15991 * 57.65503 * 17 16 15 26 26 C 1.46854 * 110.99948 * 294.20649 * 14 13 11 27 27 H 0.96997 * 120.00431 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47557 * 60.00151 * 9 7 2 29 29 H 1.08999 * 109.47314 * 300.00060 * 9 7 2 30 30 H 0.96998 * 120.00089 * 359.97438 * 10 9 7 31 31 H 1.09010 * 109.47005 * 60.00136 * 13 11 10 32 32 H 1.08999 * 109.47079 * 300.00201 * 13 11 10 33 33 H 1.08998 * 109.46362 * 65.82525 * 15 14 13 34 34 H 1.08996 * 109.46386 * 305.85538 * 15 14 13 35 35 H 1.08999 * 109.50197 * 180.88070 * 16 15 14 36 36 H 1.08998 * 109.53470 * 60.78379 * 16 15 14 37 37 H 1.08999 * 109.52717 * 297.68954 * 17 16 15 38 38 H 1.08993 * 109.47007 * 55.00361 * 18 17 16 39 39 H 1.08996 * 109.47340 * 295.00167 * 18 17 16 40 40 H 1.08998 * 109.50492 * 297.54142 * 20 19 18 41 41 H 1.09007 * 109.50106 * 57.67293 * 20 19 18 42 42 H 1.08995 * 109.50808 * 296.91455 * 21 20 19 43 43 H 1.08995 * 109.54142 * 176.80219 * 21 20 19 44 44 H 1.08995 * 109.50535 * 298.73468 * 23 22 21 45 45 H 1.09001 * 109.53535 * 178.62697 * 23 22 21 46 46 H 1.08999 * 109.50465 * 302.33238 * 24 19 18 47 47 H 1.08998 * 109.50618 * 62.41050 * 24 19 18 48 48 H 1.09000 * 109.50292 * 62.28455 * 25 17 16 49 49 H 1.08998 * 109.50635 * 182.40159 * 25 17 16 50 50 H 1.08995 * 109.46301 * 294.18371 * 26 14 13 51 51 H 1.09000 * 109.45863 * 54.15862 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7541 -4.8833 -0.0011 12 8 0.5617 -5.1050 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 7 1.9990 -7.3009 -0.0028 15 6 2.9053 -8.4315 -0.2414 16 6 2.0905 -9.7194 -0.3806 17 6 1.2846 -9.9489 0.9009 18 6 0.4214 -11.2025 0.7446 19 7 -0.2596 -11.4895 2.0141 20 6 0.7062 -11.8658 3.0568 21 6 -0.0380 -12.0974 4.3745 22 8 -1.0417 -13.0975 4.1799 23 6 -1.9995 -12.7634 3.1717 24 6 -1.2752 -12.5384 1.8419 25 6 0.3845 -8.7360 1.1525 26 6 1.2487 -7.4765 1.2474 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5568 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 3.1569 -3.4353 -0.0009 31 1 3.3602 -5.9713 0.8884 32 1 3.3600 -5.9705 -0.8916 33 1 3.5952 -8.5271 0.5970 34 1 3.4693 -8.2576 -1.1577 35 1 2.7645 -10.5607 -0.5421 36 1 1.4101 -9.6305 -1.2274 37 1 1.9661 -10.0785 1.7417 38 1 1.0538 -12.0474 0.4723 39 1 -0.3206 -11.0375 -0.0366 40 1 1.2204 -12.7810 2.7634 41 1 1.4335 -11.0641 3.1855 42 1 -0.5079 -11.1678 4.6954 43 1 0.6658 -12.4316 5.1368 44 1 -2.5264 -11.8532 3.4577 45 1 -2.7143 -13.5791 3.0634 46 1 -1.9941 -12.2279 1.0837 47 1 -0.7927 -13.4642 1.5283 48 1 -0.3229 -8.6309 0.3299 49 1 -0.1604 -8.8746 2.0863 50 1 1.9465 -7.5765 2.0787 51 1 0.6095 -6.6092 1.4121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051959028.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:28 Heat of formation + Delta-G solvation = -78.677953 kcal Electronic energy + Delta-G solvation = -28091.829035 eV Core-core repulsion = 24218.711326 eV Total energy + Delta-G solvation = -3873.117710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14279 -39.39375 -38.12126 -36.22882 -34.16018 -33.48147 -32.29709 -31.52950 -30.75518 -29.34063 -27.78032 -26.34265 -24.46883 -24.37881 -23.12858 -22.41514 -21.50970 -20.64752 -19.64774 -19.58618 -17.08574 -16.86198 -16.48194 -16.08924 -15.64601 -15.51605 -15.38147 -15.22537 -15.10420 -14.80587 -14.44139 -14.33638 -14.18915 -13.91481 -13.63396 -13.05885 -12.96949 -12.56625 -12.50187 -12.32159 -12.17631 -11.98641 -11.83100 -11.75383 -11.61933 -11.28663 -11.13583 -10.98719 -10.94802 -10.84656 -10.65113 -10.38417 -10.33008 -10.21031 -9.96111 -9.39432 -8.93747 -8.71205 -8.68244 -8.13339 -7.81665 -6.15194 -4.22174 3.25685 3.30447 3.31932 3.37764 3.43384 3.55393 3.73711 4.28167 4.42392 4.47832 4.56061 4.61764 4.72035 4.78993 4.80654 4.89069 4.95577 5.15259 5.17642 5.20612 5.24745 5.29237 5.34213 5.35519 5.38649 5.43302 5.50400 5.52833 5.54253 5.60247 5.62825 5.64555 5.72026 5.86321 5.94155 6.02348 6.21410 6.36077 6.48027 6.62516 6.66097 6.79387 7.09092 7.25117 7.35846 7.48791 7.54760 7.69779 7.99204 8.66980 8.81306 9.16767 9.44647 10.94924 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.001999 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.210593 B =14000.274110 C =14621.491263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.716 5.716 11 C 0.498 3.502 12 O -0.537 6.537 13 C 0.036 3.964 14 N -0.518 5.518 15 C 0.058 3.942 16 C -0.109 4.109 17 C -0.085 4.085 18 C 0.062 3.938 19 N -0.533 5.533 20 C 0.016 3.984 21 C 0.063 3.937 22 O -0.388 6.388 23 C 0.063 3.937 24 C 0.018 3.982 25 C -0.096 4.096 26 C 0.050 3.950 27 H 0.266 0.734 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.389 0.611 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.040 0.960 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.021 0.979 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.061 -26.674 4.190 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.365 5.365 11 C 0.282 3.718 12 O -0.415 6.415 13 C -0.096 4.096 14 N -0.243 5.243 15 C -0.070 4.070 16 C -0.148 4.148 17 C -0.104 4.104 18 C -0.065 4.065 19 N -0.258 5.258 20 C -0.112 4.112 21 C -0.014 4.014 22 O -0.307 6.307 23 C -0.014 4.014 24 C -0.110 4.110 25 C -0.134 4.134 26 C -0.078 4.078 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.221 0.779 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.039 0.961 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.418 -26.414 4.067 26.834 hybrid contribution 2.047 0.579 0.122 2.131 sum 4.465 -25.835 4.188 26.550 Atomic orbital electron populations 1.69964 1.06091 1.27390 1.48822 1.24957 0.94920 0.99432 0.94745 0.86476 0.79411 0.82361 0.78658 1.20077 1.21077 1.20104 1.21196 0.93208 0.90526 1.53273 0.91998 1.19063 0.88269 0.81891 0.97653 1.46461 1.11018 1.06145 1.72926 1.20306 0.89601 0.84052 0.77805 1.90627 1.16655 1.84492 1.49741 1.21993 0.95441 0.89815 1.02335 1.61572 1.26066 1.00120 1.36546 1.22059 0.93781 0.90810 1.00350 1.21581 0.98800 0.96169 0.98200 1.21259 0.96712 0.94710 0.97736 1.22193 0.96953 0.96614 0.90743 1.62172 1.14611 1.41309 1.07687 1.22833 0.95233 1.00249 0.92918 1.22674 0.90460 0.92298 0.95977 1.87977 1.40725 1.44407 1.57565 1.22665 0.90828 1.01390 0.86497 1.22774 0.95775 0.93523 0.98948 1.21462 0.97400 0.91793 1.02697 1.22316 0.96768 1.00377 0.88319 0.92401 0.95570 0.95670 0.77893 0.92690 0.88511 0.95305 0.90801 0.91951 0.90787 0.91676 0.94953 0.90328 0.94198 0.89291 0.92049 0.88577 0.92046 0.88551 0.89493 0.94180 0.91173 0.90871 0.96125 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.71 5.43 -5.20 -0.03 6.68 16 10 N -0.72 -15.07 5.55 -61.47 -0.34 -15.41 16 11 C 0.50 9.94 7.50 -10.99 -0.08 9.86 16 12 O -0.54 -12.86 14.32 5.56 0.08 -12.78 16 13 C 0.04 0.52 5.45 -4.98 -0.03 0.49 16 14 N -0.52 -7.37 4.40 -236.11 -1.04 -8.41 16 15 C 0.06 0.62 5.46 -3.83 -0.02 0.60 16 16 C -0.11 -1.02 5.38 -26.65 -0.14 -1.16 16 17 C -0.09 -0.81 2.18 -90.50 -0.20 -1.01 16 18 C 0.06 0.53 4.35 -3.82 -0.02 0.52 16 19 N -0.53 -4.66 4.25 -234.31 -0.99 -5.66 16 20 C 0.02 0.13 5.44 -3.71 -0.02 0.11 16 21 C 0.06 0.50 7.01 37.21 0.26 0.76 16 22 O -0.39 -3.74 10.83 -35.23 -0.38 -4.12 16 23 C 0.06 0.49 7.01 37.20 0.26 0.75 16 24 C 0.02 0.14 5.64 -3.72 -0.02 0.12 16 25 C -0.10 -1.16 5.24 -26.65 -0.14 -1.30 16 26 C 0.05 0.71 5.11 -3.83 -0.02 0.69 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 31 H 0.06 0.71 8.12 -51.92 -0.42 0.28 16 32 H 0.10 1.21 7.99 -51.93 -0.41 0.79 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.72 8.01 -51.93 -0.42 0.31 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.61 6.30 -51.93 -0.33 0.28 16 38 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 39 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.69 6.29 -51.93 -0.33 0.36 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 50 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 51 H 0.10 1.77 5.78 -51.93 -0.30 1.47 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -32.57 394.07 -10.88 -43.45 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -9.24 Total: 2.94 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.61 Total: 3.65 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -1.64 Total: -54.93 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.30 Total: -16.91 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.57 -10.88 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051959028.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.232 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds