Wall clock time and date at job start Fri Apr 10 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99537 * 2 1 4 4 H 1.48499 * 109.47044 * 240.00006 * 3 2 1 5 5 H 1.48497 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46800 * 120.00471 * 3 2 1 7 7 C 1.37876 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47017 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99895 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99879 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00060 * 179.97438 * 11 10 9 14 14 N 1.46900 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.46848 * 110.99689 * 170.00242 * 14 13 11 16 16 C 1.53039 * 109.52102 * 185.83603 * 15 14 13 17 17 C 1.53116 * 109.28151 * 300.81855 * 16 15 14 18 18 C 1.53000 * 109.52285 * 177.55754 * 17 16 15 19 19 N 1.46906 * 109.47072 * 175.00311 * 18 17 16 20 20 C 1.47020 * 110.99867 * 293.63551 * 19 18 17 21 21 C 1.53097 * 109.25663 * 177.60414 * 20 19 18 22 22 O 1.43021 * 109.25605 * 56.85187 * 21 20 19 23 23 C 1.43021 * 113.73613 * 301.32802 * 22 21 20 24 24 C 1.47009 * 111.00252 * 170.00094 * 19 18 17 25 25 C 1.53124 * 109.15991 * 57.65503 * 17 16 15 26 26 C 1.46854 * 110.99948 * 294.20649 * 14 13 11 27 27 H 0.96997 * 120.00431 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47557 * 60.00151 * 9 7 2 29 29 H 1.08999 * 109.47314 * 300.00060 * 9 7 2 30 30 H 0.96998 * 120.00089 * 359.97438 * 10 9 7 31 31 H 1.09010 * 109.47005 * 60.00136 * 13 11 10 32 32 H 1.08999 * 109.47079 * 300.00201 * 13 11 10 33 33 H 1.08998 * 109.46362 * 65.82525 * 15 14 13 34 34 H 1.08996 * 109.46386 * 305.85538 * 15 14 13 35 35 H 1.08999 * 109.50197 * 180.88070 * 16 15 14 36 36 H 1.08998 * 109.53470 * 60.78379 * 16 15 14 37 37 H 1.08999 * 109.52717 * 297.68954 * 17 16 15 38 38 H 1.08993 * 109.47007 * 55.00361 * 18 17 16 39 39 H 1.08996 * 109.47340 * 295.00167 * 18 17 16 40 40 H 1.08998 * 109.50492 * 297.54142 * 20 19 18 41 41 H 1.09007 * 109.50106 * 57.67293 * 20 19 18 42 42 H 1.08995 * 109.50808 * 296.91455 * 21 20 19 43 43 H 1.08995 * 109.54142 * 176.80219 * 21 20 19 44 44 H 1.08995 * 109.50535 * 298.73468 * 23 22 21 45 45 H 1.09001 * 109.53535 * 178.62697 * 23 22 21 46 46 H 1.08999 * 109.50465 * 302.33238 * 24 19 18 47 47 H 1.08998 * 109.50618 * 62.41050 * 24 19 18 48 48 H 1.09000 * 109.50292 * 62.28455 * 25 17 16 49 49 H 1.08998 * 109.50635 * 182.40159 * 25 17 16 50 50 H 1.08995 * 109.46301 * 294.18371 * 26 14 13 51 51 H 1.09000 * 109.45863 * 54.15862 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7541 -4.8833 -0.0011 12 8 0.5617 -5.1050 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 7 1.9990 -7.3009 -0.0028 15 6 2.9053 -8.4315 -0.2414 16 6 2.0905 -9.7194 -0.3806 17 6 1.2846 -9.9489 0.9009 18 6 0.4214 -11.2025 0.7446 19 7 -0.2596 -11.4895 2.0141 20 6 0.7062 -11.8658 3.0568 21 6 -0.0380 -12.0974 4.3745 22 8 -1.0417 -13.0975 4.1799 23 6 -1.9995 -12.7634 3.1717 24 6 -1.2752 -12.5384 1.8419 25 6 0.3845 -8.7360 1.1525 26 6 1.2487 -7.4765 1.2474 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5568 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 3.1569 -3.4353 -0.0009 31 1 3.3602 -5.9713 0.8884 32 1 3.3600 -5.9705 -0.8916 33 1 3.5952 -8.5271 0.5970 34 1 3.4693 -8.2576 -1.1577 35 1 2.7645 -10.5607 -0.5421 36 1 1.4101 -9.6305 -1.2274 37 1 1.9661 -10.0785 1.7417 38 1 1.0538 -12.0474 0.4723 39 1 -0.3206 -11.0375 -0.0366 40 1 1.2204 -12.7810 2.7634 41 1 1.4335 -11.0641 3.1855 42 1 -0.5079 -11.1678 4.6954 43 1 0.6658 -12.4316 5.1368 44 1 -2.5264 -11.8532 3.4577 45 1 -2.7143 -13.5791 3.0634 46 1 -1.9941 -12.2279 1.0837 47 1 -0.7927 -13.4642 1.5283 48 1 -0.3229 -8.6309 0.3299 49 1 -0.1604 -8.8746 2.0863 50 1 1.9465 -7.5765 2.0787 51 1 0.6095 -6.6092 1.4121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051959028.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:27 Heat of formation + Delta-G solvation = -103.961086 kcal Electronic energy + Delta-G solvation = -28092.925394 eV Core-core repulsion = 24218.711326 eV Total energy + Delta-G solvation = -3874.214069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04128 -40.52312 -39.33823 -37.05759 -36.07122 -34.47847 -34.28060 -32.13962 -31.69347 -30.50552 -29.24713 -27.62351 -25.54045 -25.02622 -24.26840 -24.02758 -22.43524 -21.33174 -21.30048 -20.49266 -18.90099 -17.60937 -17.41913 -17.31476 -17.09486 -16.63858 -16.56339 -16.13447 -16.00411 -15.93551 -15.66531 -15.50328 -15.19863 -15.05231 -14.72547 -14.27923 -14.17406 -13.93640 -13.77881 -13.63369 -13.21796 -12.98626 -12.96663 -12.86274 -12.69182 -12.61919 -12.36717 -12.24392 -12.23182 -12.06707 -11.62755 -11.51079 -11.48954 -11.26082 -11.16554 -10.78328 -10.65046 -10.52094 -9.78257 -9.33077 -9.18931 -8.28555 -6.45494 1.42877 1.47236 1.55422 1.83294 2.29306 2.49283 2.74578 2.96326 3.05881 3.11465 3.71809 3.86999 3.94166 3.94898 4.02782 4.04502 4.19747 4.21873 4.30723 4.31982 4.35734 4.39622 4.48917 4.53942 4.60093 4.63398 4.66267 4.73277 4.76768 4.81740 4.88195 4.92358 5.00304 5.01805 5.04982 5.12739 5.13010 5.25324 5.27667 5.35977 5.50405 5.53479 5.72723 5.85942 5.99050 6.00186 6.06740 6.17222 6.26064 6.65894 6.98150 7.24268 7.56803 8.83408 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.001999 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.210593 B =14000.274110 C =14621.491263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.270 3.730 10 N -0.711 5.711 11 C 0.493 3.507 12 O -0.584 6.584 13 C 0.049 3.951 14 N -0.541 5.541 15 C 0.058 3.942 16 C -0.106 4.106 17 C -0.075 4.075 18 C 0.068 3.932 19 N -0.547 5.547 20 C 0.019 3.981 21 C 0.060 3.940 22 O -0.406 6.406 23 C 0.061 3.939 24 C 0.020 3.980 25 C -0.086 4.086 26 C 0.054 3.946 27 H 0.268 0.732 28 H -0.016 1.016 29 H -0.016 1.016 30 H 0.408 0.592 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.112 0.888 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.042 0.958 48 H 0.045 0.955 49 H 0.068 0.932 50 H 0.033 0.967 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.271 -27.757 4.080 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.147 3.853 10 N -0.362 5.362 11 C 0.280 3.720 12 O -0.464 6.464 13 C -0.081 4.081 14 N -0.266 5.266 15 C -0.069 4.069 16 C -0.144 4.144 17 C -0.094 4.094 18 C -0.059 4.059 19 N -0.273 5.273 20 C -0.109 4.109 21 C -0.017 4.017 22 O -0.325 6.325 23 C -0.016 4.016 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.074 4.074 27 H 0.077 0.923 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.243 0.757 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.130 0.870 44 H 0.073 0.927 45 H 0.131 0.869 46 H 0.110 0.890 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.051 0.949 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.682 -27.538 3.953 28.395 hybrid contribution 0.969 0.857 0.167 1.305 sum 6.651 -26.681 4.121 27.804 Atomic orbital electron populations 1.70138 1.08310 1.28610 1.49950 1.26101 0.95796 1.04004 0.93890 0.85193 0.77886 0.76521 0.79526 1.18589 1.21164 1.18614 1.21602 0.94324 0.90594 1.52898 0.89746 1.18470 0.88669 0.84402 0.93796 1.46200 1.11101 1.05552 1.73380 1.21419 0.90081 0.84771 0.75770 1.90616 1.19314 1.85171 1.51330 1.21926 0.93794 0.87465 1.04948 1.61525 1.27528 1.01144 1.36420 1.22187 0.93532 0.89612 1.01611 1.21582 0.98882 0.96584 0.97344 1.21167 0.96350 0.93535 0.98352 1.22104 0.96817 0.96434 0.90578 1.62169 1.15130 1.41998 1.07980 1.22815 0.95078 1.00380 0.92591 1.22779 0.90484 0.91845 0.96545 1.87950 1.41291 1.45103 1.58136 1.22774 0.90819 1.01808 0.86167 1.22774 0.95680 0.93306 0.99050 1.21331 0.97166 0.92443 1.01463 1.22151 0.96703 0.99334 0.89187 0.92276 0.99771 0.99785 0.75688 0.90019 0.85460 0.93745 0.89301 0.89192 0.92006 0.90768 0.93719 0.90917 0.94042 0.88867 0.92780 0.86980 0.92723 0.86867 0.88979 0.94019 0.93567 0.91380 0.94859 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.99 42.49 29.54 68.60 2.03 44.52 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 9 C 0.27 15.05 5.43 85.63 0.46 15.51 16 10 N -0.71 -30.32 5.55 -466.79 -2.59 -32.91 16 11 C 0.49 19.98 7.50 87.66 0.66 20.63 16 12 O -0.58 -29.56 14.32 -3.03 -0.04 -29.60 16 13 C 0.05 1.34 5.45 85.56 0.47 1.81 16 14 N -0.54 -14.67 4.40 -900.91 -3.96 -18.63 16 15 C 0.06 1.04 5.46 86.33 0.47 1.52 16 16 C -0.11 -1.69 5.38 30.65 0.16 -1.52 16 17 C -0.08 -1.29 2.18 -10.71 -0.02 -1.31 16 18 C 0.07 1.06 4.35 86.30 0.38 1.43 16 19 N -0.55 -9.00 4.25 -895.23 -3.80 -12.80 16 20 C 0.02 0.28 5.44 86.31 0.47 0.75 16 21 C 0.06 0.91 7.01 72.01 0.50 1.41 16 22 O -0.41 -7.49 10.83 -148.98 -1.61 -9.10 16 23 C 0.06 0.90 7.01 72.01 0.50 1.41 16 24 C 0.02 0.29 5.64 86.31 0.49 0.78 16 25 C -0.09 -2.11 5.24 30.65 0.16 -1.95 16 26 C 0.05 1.56 5.11 86.32 0.44 2.00 16 27 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 28 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 29 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 30 H 0.41 14.12 8.32 -92.71 -0.77 13.35 16 31 H 0.08 1.83 8.12 -2.38 -0.02 1.81 16 32 H 0.13 2.72 7.99 -2.39 -0.02 2.70 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 1.38 8.01 -2.39 -0.02 1.36 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.18 6.30 -2.39 -0.02 1.17 16 38 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 39 H 0.07 1.22 8.04 -2.39 -0.02 1.20 16 40 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.09 1.25 6.29 -2.38 -0.01 1.24 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.09 1.21 8.09 -2.39 -0.02 1.20 16 47 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.07 1.70 7.84 -2.39 -0.02 1.68 16 50 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.05 2.00 5.78 -2.39 -0.01 1.99 16 Total: -1.00 -74.88 394.07 -3.73 -78.61 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.13 Total: 23.79 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 5.84 Total: 12.73 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -10.07 Total: -120.95 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -1.66 Total: -38.70 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -74.88 -3.73 -78.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051959028.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.349 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds