Wall clock time and date at job start Fri Apr 10 2020 18:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47346 * 2 1 4 4 C 1.52999 * 109.47213 * 120.00222 * 2 1 3 5 5 H 1.08993 * 109.47210 * 59.99828 * 4 2 1 6 6 C 1.52999 * 109.47213 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.47125 * 175.00034 * 6 4 2 8 8 C 1.34781 * 119.99782 * 180.02562 * 7 6 4 9 9 O 1.21284 * 119.99989 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99767 * 179.97438 * 8 7 6 11 11 H 1.08993 * 109.47464 * 300.00018 * 10 8 7 12 12 C 1.53004 * 109.46859 * 60.00044 * 10 8 7 13 13 N 1.46497 * 109.46919 * 179.97438 * 10 8 7 14 14 C 1.33879 * 122.76265 * 120.00376 * 13 10 8 15 15 O 1.21233 * 125.39135 * 359.97435 * 14 13 10 16 16 C 1.51312 * 109.20866 * 180.24223 * 14 13 10 17 17 C 1.54228 * 103.55616 * 359.63118 * 16 14 13 18 18 C 1.33875 * 122.76728 * 300.00034 * 13 10 8 19 19 O 1.21230 * 125.39221 * 0.02562 * 18 13 10 20 20 N 1.46497 * 109.46823 * 299.99816 * 4 2 1 21 21 C 1.36938 * 119.99897 * 85.00161 * 20 4 2 22 22 H 1.07994 * 120.00246 * 0.02562 * 21 20 4 23 23 C 1.38812 * 120.00052 * 179.97438 * 21 20 4 24 24 N 1.31625 * 120.00152 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00396 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46560 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47519 * 119.99715 * 25 23 21 28 28 H 1.48501 * 109.46988 * 239.99969 * 25 23 21 29 29 H 1.09003 * 109.47344 * 300.00116 * 1 2 3 30 30 H 1.09006 * 109.47428 * 59.99724 * 1 2 3 31 31 H 1.09001 * 109.47024 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46819 * 239.99861 * 2 1 3 33 33 H 1.08998 * 109.47591 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47082 * 300.00488 * 3 2 1 35 35 H 1.09003 * 109.46994 * 59.99669 * 3 2 1 36 36 H 1.08998 * 109.47208 * 54.99731 * 6 4 2 37 37 H 1.09003 * 109.47025 * 295.00038 * 6 4 2 38 38 H 0.96998 * 120.00240 * 359.97438 * 7 6 4 39 39 H 1.08994 * 109.46948 * 179.97438 * 12 10 8 40 40 H 1.08998 * 109.46998 * 299.99856 * 12 10 8 41 41 H 1.09003 * 109.47094 * 59.99765 * 12 10 8 42 42 H 1.09004 * 110.60416 * 118.27645 * 16 14 13 43 43 H 1.08993 * 110.60499 * 241.24048 * 16 14 13 44 44 H 1.08994 * 110.80706 * 241.73088 * 17 16 14 45 45 H 1.08998 * 110.53952 * 118.82350 * 17 16 14 46 46 H 0.97004 * 120.00240 * 264.99590 * 20 4 2 47 47 H 0.96993 * 120.00326 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 3.5700 -0.7218 1.2489 7 7 4.0584 -1.3056 2.5006 8 6 5.3835 -1.4097 2.7237 9 8 6.1716 -1.0204 1.8880 10 6 5.8859 -2.0097 4.0117 11 1 5.5227 -1.4199 4.8532 12 6 5.3758 -3.4466 4.1379 13 7 7.3509 -2.0103 4.0112 14 6 8.0759 -1.3644 4.9330 15 8 7.6253 -0.7180 5.8543 16 6 9.5467 -1.5636 4.6387 17 6 9.5461 -2.4538 3.3793 18 6 8.0749 -2.6568 3.0893 19 8 7.6234 -3.3021 2.1677 20 7 1.5517 -0.0307 2.4453 21 6 0.3101 -0.3211 2.9447 22 1 -0.3089 -1.0595 2.4570 23 6 -0.1524 0.3329 4.0784 24 7 0.6026 1.2318 4.6737 25 14 -1.8457 -0.0637 4.7601 26 1 -2.4888 -1.1017 3.9149 27 1 -1.7139 -0.5685 6.1504 28 1 -2.6808 1.1642 4.7564 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9337 0.3017 1.1591 37 1 3.9329 -1.3115 0.4070 38 1 3.4281 -1.6166 3.1692 39 1 5.7395 -3.8807 5.0692 40 1 4.2858 -3.4465 4.1380 41 1 5.7390 -4.0364 3.2962 42 1 10.0300 -0.6080 4.4352 43 1 10.0378 -2.0744 5.4669 44 1 10.0328 -3.4083 3.5796 45 1 10.0336 -1.9425 2.5493 46 1 2.1079 0.6323 2.8837 47 1 0.2796 1.6885 5.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698963865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:16 Heat of formation + Delta-G solvation = -116.003653 kcal Electronic energy + Delta-G solvation = -29057.404240 eV Core-core repulsion = 25046.834872 eV Total energy + Delta-G solvation = -4010.569368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.07426 -40.71153 -39.59851 -38.85297 -36.91433 -35.54171 -35.15477 -34.72958 -32.06996 -31.37026 -29.42536 -27.77774 -27.07604 -26.14713 -25.33029 -23.74329 -23.28785 -21.87886 -20.64546 -20.03105 -19.25180 -18.66832 -18.27753 -17.69536 -17.14445 -16.91584 -16.72323 -16.27283 -15.91135 -15.71757 -15.30742 -15.23329 -15.10929 -14.86274 -14.77035 -14.60529 -14.51294 -13.98618 -13.82709 -13.60862 -13.37663 -13.28177 -12.97125 -12.93279 -12.81760 -12.68597 -12.43844 -12.15612 -12.08350 -11.93862 -11.89490 -11.55781 -11.47646 -11.36535 -11.20389 -11.00092 -10.88201 -10.61729 -10.08187 -8.94637 -7.86324 -5.12752 0.55583 1.31104 1.45871 1.48907 1.51877 1.58970 1.74299 2.23951 2.60387 3.21080 3.29299 3.46832 3.56341 3.66012 3.75906 3.85918 3.88665 3.92210 4.15435 4.20502 4.25594 4.32439 4.39639 4.55773 4.65731 4.67591 4.72421 4.76288 4.91527 4.93526 4.93701 4.95921 4.98190 5.10176 5.19936 5.25963 5.29921 5.47724 5.57490 5.63899 5.81483 5.83393 6.33418 6.36143 6.42456 6.76836 7.08075 7.42056 8.13006 8.38547 9.36610 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003503 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.924395 B = 7990.493939 C = 9064.000141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.171 3.829 5 H 0.058 0.942 6 C 0.122 3.878 7 N -0.703 5.703 8 C 0.505 3.495 9 O -0.570 6.570 10 C 0.104 3.896 11 H 0.124 0.876 12 C -0.150 4.150 13 N -0.566 5.566 14 C 0.517 3.483 15 O -0.527 6.527 16 C -0.136 4.136 17 C -0.139 4.139 18 C 0.519 3.481 19 O -0.510 6.510 20 N -0.721 5.721 21 C -0.211 4.211 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.967 5.967 25 Si 0.955 3.045 26 H -0.266 1.266 27 H -0.300 1.300 28 H -0.304 1.304 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.412 0.588 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.141 0.859 43 H 0.156 0.844 44 H 0.154 0.846 45 H 0.136 0.864 46 H 0.372 0.628 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.963 -9.790 -3.012 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.062 3.938 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.354 5.354 8 C 0.290 3.710 9 O -0.449 6.449 10 C -0.003 4.003 11 H 0.142 0.858 12 C -0.208 4.208 13 N -0.308 5.308 14 C 0.309 3.691 15 O -0.401 6.401 16 C -0.175 4.175 17 C -0.178 4.178 18 C 0.311 3.689 19 O -0.383 6.383 20 N -0.361 5.361 21 C -0.342 4.342 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.619 5.619 25 Si 0.787 3.213 26 H -0.190 1.190 27 H -0.228 1.228 28 H -0.232 1.232 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.249 0.751 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.159 0.841 43 H 0.174 0.826 44 H 0.172 0.828 45 H 0.154 0.846 46 H 0.204 0.796 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.825 -9.629 -3.617 20.580 hybrid contribution -1.729 0.549 1.018 2.081 sum 16.095 -9.080 -2.599 18.662 Atomic orbital electron populations 1.21749 0.95319 1.00960 1.01272 1.21580 0.96416 0.96523 0.98088 1.21709 0.99947 0.96679 1.00860 1.20670 0.89769 0.95768 0.87634 0.92376 1.21655 0.94837 0.97970 0.85752 1.45853 1.06219 1.61900 1.21437 1.20831 0.82955 0.78609 0.88628 1.90643 1.56051 1.50688 1.47548 1.21223 0.80779 1.01250 0.97016 0.85814 1.22045 1.03095 0.91484 1.04179 1.46805 1.07160 1.47839 1.29035 1.21917 0.92400 0.75465 0.79304 1.90786 1.78983 1.39043 1.31303 1.22593 0.89392 1.04969 1.00540 1.22584 0.89837 1.05181 1.00229 1.21737 0.92002 0.75997 0.79149 1.90725 1.78737 1.39258 1.29614 1.42504 1.17156 1.47307 1.29136 1.19502 0.93185 1.16196 1.05361 0.90217 1.25303 1.01026 1.00179 0.99713 1.69809 1.38237 1.31044 1.22772 0.85324 0.81257 0.76857 0.77854 1.19050 1.22770 1.23231 0.92946 0.93033 0.93480 0.90416 0.93173 0.92450 0.94605 0.92592 0.90833 0.75150 0.89176 0.89196 0.91406 0.84071 0.82626 0.82808 0.84566 0.79556 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.26 71.98 0.59 -4.02 16 2 C -0.10 -3.39 2.80 -10.80 -0.03 -3.42 16 3 C -0.13 -4.48 8.69 71.98 0.63 -3.86 16 4 C 0.17 6.06 2.35 44.99 0.11 6.16 16 5 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 6 C 0.12 4.15 5.02 86.38 0.43 4.59 16 7 N -0.70 -23.78 5.28 -463.05 -2.45 -26.23 16 8 C 0.50 17.53 6.79 87.66 0.60 18.13 16 9 O -0.57 -22.90 14.80 12.50 0.19 -22.71 16 10 C 0.10 2.97 3.12 44.25 0.14 3.11 16 11 H 0.12 3.70 7.41 -2.39 -0.02 3.69 16 12 C -0.15 -3.51 9.07 71.98 0.65 -2.85 16 13 N -0.57 -14.22 2.28 -738.13 -1.68 -15.90 16 14 C 0.52 11.56 8.08 87.99 0.71 12.27 16 15 O -0.53 -16.09 17.23 -2.88 -0.05 -16.14 16 16 C -0.14 -1.21 7.03 30.46 0.21 -1.00 16 17 C -0.14 -1.33 7.03 30.46 0.21 -1.12 16 18 C 0.52 12.10 6.70 87.99 0.59 12.69 16 19 O -0.51 -15.95 15.12 12.67 0.19 -15.76 16 20 N -0.72 -31.95 3.67 -322.96 -1.19 -33.14 16 21 C -0.21 -10.38 7.57 84.03 0.64 -9.74 16 22 H 0.08 3.80 7.40 -2.91 -0.02 3.77 16 23 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 24 N -0.97 -56.47 13.06 21.65 0.28 -56.19 16 25 Si 0.96 44.33 29.55 68.60 2.03 46.36 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 29 H 0.05 2.17 6.01 -2.39 -0.01 2.15 16 30 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.59 6.32 -2.39 -0.02 1.58 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.03 1.42 7.60 -2.39 -0.02 1.40 16 36 H 0.06 2.06 6.18 -2.39 -0.01 2.05 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.41 13.82 7.56 -92.71 -0.70 13.12 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 1.98 7.56 -2.39 -0.02 1.96 16 41 H 0.07 1.75 6.64 -2.39 -0.02 1.73 16 42 H 0.14 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.37 18.62 7.80 -92.71 -0.72 17.89 16 47 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -74.78 378.60 2.85 -71.93 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.42 Total: 40.11 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 5.95 Total: 27.66 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -5.03 Total: -131.45 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: 0.33 Total: -54.61 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -74.78 2.85 -71.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698963865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.073 kcal (2) G-P(sol) polarization free energy of solvation -74.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds