Wall clock time and date at job start Fri Apr 10 2020 18:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47046 * 2 1 4 4 C 1.36939 * 120.00104 * 275.31226 * 3 2 1 5 5 H 1.07998 * 119.99921 * 37.57741 * 4 3 2 6 6 C 1.38814 * 120.00015 * 217.58054 * 4 3 2 7 7 N 1.31614 * 119.99803 * 21.42500 * 6 4 3 8 8 Si 1.86794 * 119.99867 * 201.42054 * 6 4 3 9 9 H 1.48509 * 109.47226 * 60.00166 * 8 6 4 10 10 H 1.48501 * 109.47336 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47617 * 300.00216 * 8 6 4 12 12 C 1.46495 * 120.00155 * 95.31319 * 3 2 1 13 13 C 1.52998 * 109.47115 * 270.00302 * 12 3 2 14 14 C 1.53002 * 109.47384 * 179.97438 * 13 12 3 15 15 N 1.46493 * 109.47433 * 179.97438 * 14 13 12 16 16 C 1.34773 * 120.00451 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99538 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00249 * 179.97438 * 16 15 14 19 19 H 1.08995 * 109.46955 * 60.00861 * 18 16 15 20 20 C 1.53003 * 109.47296 * 300.00427 * 18 16 15 21 21 N 1.46504 * 109.47176 * 180.02562 * 18 16 15 22 22 C 1.33870 * 122.76346 * 240.00311 * 21 18 16 23 23 O 1.21229 * 125.39926 * 359.97438 * 22 21 18 24 24 C 1.51311 * 109.20658 * 179.97438 * 22 21 18 25 25 C 1.54223 * 103.69657 * 359.92050 * 24 22 21 26 26 C 1.33874 * 122.76002 * 60.00235 * 21 18 16 27 27 O 1.21234 * 125.39574 * 0.02562 * 26 21 18 28 28 H 1.08998 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47059 * 299.99726 * 1 2 3 30 30 H 1.08995 * 109.47246 * 59.99977 * 1 2 3 31 31 H 1.09009 * 109.46751 * 240.00424 * 2 1 3 32 32 H 1.08995 * 109.47402 * 120.00793 * 2 1 3 33 33 H 0.97001 * 119.99788 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.47408 * 149.99763 * 12 3 2 35 35 H 1.09002 * 109.47015 * 29.99576 * 12 3 2 36 36 H 1.09001 * 109.47232 * 59.99274 * 13 12 3 37 37 H 1.09003 * 109.47105 * 299.99551 * 13 12 3 38 38 H 1.08992 * 109.47258 * 59.99388 * 14 13 12 39 39 H 1.09003 * 109.46649 * 299.99849 * 14 13 12 40 40 H 0.97008 * 120.00044 * 359.97438 * 15 14 13 41 41 H 1.09001 * 109.46917 * 299.99713 * 20 18 16 42 42 H 1.08988 * 109.47132 * 60.00188 * 20 18 16 43 43 H 1.09004 * 109.46748 * 180.02562 * 20 18 16 44 44 H 1.09003 * 110.61105 * 118.52032 * 24 22 21 45 45 H 1.09002 * 110.60974 * 241.32441 * 24 22 21 46 46 H 1.09006 * 110.60602 * 118.59228 * 25 24 22 47 47 H 1.08997 * 110.60833 * 241.55989 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7980 -0.6491 8 14 3.0993 4.2794 -2.6585 9 1 1.9626 5.1786 -2.3345 10 1 4.3617 5.0615 -2.6662 11 1 2.8843 3.6726 -3.9967 12 6 2.3732 2.0327 1.2632 13 6 1.1426 2.7382 1.8366 14 6 1.5131 3.4180 3.1562 15 7 0.3350 4.0940 3.7049 16 6 0.4245 4.7642 4.8708 17 8 1.4806 4.8081 5.4654 18 6 -0.7873 5.4601 5.4349 19 1 -1.5766 4.7294 5.6113 20 6 -1.2801 6.5130 4.4401 21 7 -0.4326 6.1110 6.6985 22 6 -1.0253 5.8092 7.8603 23 8 -1.9026 4.9856 8.0080 24 6 -0.4267 6.6588 8.9600 25 6 0.6281 7.5132 8.2282 26 6 0.5109 7.0566 6.7865 27 8 1.1692 7.4800 5.8606 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.0488 3.4031 -0.7831 34 1 3.1616 2.7640 1.0859 35 1 2.7255 1.2833 1.9721 36 1 0.3542 2.0067 2.0139 37 1 0.7903 3.4876 1.1278 38 1 2.3017 4.1493 2.9793 39 1 1.8652 2.6683 3.8648 40 1 -0.5097 4.0593 3.2291 41 1 -0.4908 7.2438 4.2638 42 1 -1.5439 6.0291 3.4999 43 1 -2.1564 7.0166 4.8484 44 1 -1.1886 7.2940 9.4119 45 1 0.0453 6.0311 9.7159 46 1 0.3910 8.5735 8.3158 47 1 1.6252 7.3086 8.6180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752191004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:32 Heat of formation + Delta-G solvation = -84.339772 kcal Electronic energy + Delta-G solvation = -28226.251503 eV Core-core repulsion = 24217.055183 eV Total energy + Delta-G solvation = -4009.196319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.30071 -39.50765 -38.72645 -36.47803 -36.05097 -34.83254 -34.59171 -31.86352 -31.56659 -30.31051 -28.48207 -26.46042 -25.72601 -24.63168 -23.50742 -22.67938 -21.17956 -20.98637 -20.14079 -19.30261 -17.82654 -17.45743 -16.92031 -16.70108 -16.17359 -15.61815 -15.48918 -14.97551 -14.71115 -14.44150 -14.31506 -14.23419 -14.12402 -13.83366 -13.60943 -13.38392 -13.30523 -12.72503 -12.67909 -12.53508 -12.36112 -12.14908 -11.73175 -11.59475 -11.42463 -11.16804 -11.02102 -10.79779 -10.73211 -10.60833 -10.47960 -10.44642 -10.19782 -10.03670 -9.72607 -9.56242 -9.51147 -8.89871 -8.46408 -6.56146 -5.78049 -3.37408 1.29297 2.05894 2.46131 2.58441 3.24334 3.36795 3.43629 3.44375 3.74779 3.88814 4.07757 4.43562 4.47476 4.51719 4.60893 4.68005 4.93338 5.04775 5.20176 5.23530 5.24983 5.31022 5.40087 5.45528 5.64748 5.77013 5.82696 5.97641 6.08023 6.26561 6.35329 6.42140 6.45167 6.54715 6.58056 6.73732 6.76151 6.91291 7.06071 7.08896 7.17569 7.47500 7.59121 7.68092 7.82620 8.20635 8.53007 9.20230 9.82570 10.41506 11.21516 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.002753 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.103483 B =10166.511385 C =11000.086487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.262 4.262 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.152 3.848 13 C -0.146 4.146 14 C 0.122 3.878 15 N -0.718 5.718 16 C 0.505 3.495 17 O -0.528 6.528 18 C 0.107 3.893 19 H 0.129 0.871 20 C -0.163 4.163 21 N -0.559 5.559 22 C 0.530 3.470 23 O -0.488 6.488 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.530 3.470 27 O -0.461 6.461 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.399 0.601 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 8.594 18.491 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.392 4.392 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.001 4.001 15 N -0.369 5.369 16 C 0.288 3.712 17 O -0.404 6.404 18 C 0.002 3.998 19 H 0.147 0.853 20 C -0.221 4.221 21 N -0.302 5.302 22 C 0.319 3.681 23 O -0.360 6.360 24 C -0.194 4.194 25 C -0.194 4.194 26 C 0.318 3.682 27 O -0.330 6.330 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.233 0.767 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.398 8.462 18.431 23.264 hybrid contribution -0.518 0.627 -0.944 1.246 sum -11.916 9.089 17.487 23.030 Atomic orbital electron populations 1.22367 1.00180 0.98888 1.01087 1.20848 0.91665 0.87400 0.98719 1.43735 1.76068 1.08171 1.02480 1.18932 1.04679 1.21369 0.94182 0.92376 1.25190 0.94197 1.01275 0.98063 1.69986 1.03172 1.37271 1.42361 0.86489 0.76957 0.82384 0.81642 1.20924 1.21581 1.20730 1.20784 0.94400 0.96634 0.85764 1.22549 1.02454 0.99890 0.93790 1.21518 0.86866 0.96079 0.95652 1.46058 1.14842 1.53383 1.22629 1.20382 0.89666 0.79312 0.81819 1.90718 1.29587 1.60453 1.59618 1.21265 0.97279 0.97063 0.84235 0.85346 1.22132 1.02604 0.99013 0.98344 1.46493 1.36831 1.37188 1.09705 1.20855 0.80755 0.82232 0.84268 1.90779 1.28615 1.32702 1.83895 1.22448 0.99891 0.99285 0.97774 1.22517 1.02534 1.02651 0.91678 1.20799 0.77560 0.77850 0.91995 1.90793 1.42331 1.55893 1.43985 0.94633 0.93833 0.93262 0.93882 0.94860 0.93429 0.88734 0.95701 0.93016 0.91629 0.91334 0.91949 0.76651 0.90048 0.89796 0.90943 0.86132 0.86057 0.86261 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 10.21 37.16 0.38 -2.57 16 2 C 0.14 2.94 6.44 -4.04 -0.03 2.92 16 3 N -0.58 -14.24 2.43 -173.24 -0.42 -14.66 16 4 C -0.26 -7.03 9.45 -15.06 -0.14 -7.17 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.15 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -25.42 11.47 55.49 0.64 -24.78 16 8 Si 0.90 21.47 29.60 -169.99 -5.03 16.43 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.15 3.44 5.33 -4.05 -0.02 3.42 16 13 C -0.15 -2.70 5.65 -26.73 -0.15 -2.85 16 14 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 15 N -0.72 -10.18 5.45 -60.30 -0.33 -10.51 16 16 C 0.50 7.62 6.79 -10.99 -0.07 7.54 16 17 O -0.53 -9.99 14.80 -10.70 -0.16 -10.15 16 18 C 0.11 1.23 3.12 -69.08 -0.22 1.01 16 19 H 0.13 1.29 7.41 -51.93 -0.38 0.91 16 20 C -0.16 -1.55 9.07 37.16 0.34 -1.21 16 21 N -0.56 -6.15 2.28 -109.34 -0.25 -6.40 16 22 C 0.53 5.12 8.08 -11.09 -0.09 5.03 16 23 O -0.49 -6.12 17.23 5.60 0.10 -6.02 16 24 C -0.15 -0.75 7.02 -26.94 -0.19 -0.94 16 25 C -0.15 -0.87 7.05 -26.76 -0.19 -1.06 16 26 C 0.53 5.97 6.71 -10.91 -0.07 5.89 16 27 O -0.46 -7.09 15.12 -10.66 -0.16 -7.25 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.75 6.64 -51.93 -0.34 0.40 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.93 8.08 -51.92 -0.42 0.51 16 32 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.09 2.47 5.52 -51.93 -0.29 2.18 16 35 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 36 H 0.05 0.89 6.64 -51.93 -0.34 0.55 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.40 4.52 7.89 -40.82 -0.32 4.19 16 41 H 0.08 0.96 6.64 -51.93 -0.34 0.61 16 42 H 0.08 0.67 7.56 -51.94 -0.39 0.28 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -35.46 384.98 -7.81 -43.27 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.43 Total: 1.92 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -0.56 Total: 12.34 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.36 Total: -56.35 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.22 Total: -23.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.46 -7.81 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752191004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.066 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds