Wall clock time and date at job start Fri Apr 10 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36944 * 119.99460 * 2 1 4 4 H 1.07995 * 120.00754 * 321.74225 * 3 2 1 5 5 C 1.38817 * 119.99655 * 141.74080 * 3 2 1 6 6 N 1.31615 * 119.99982 * 157.42595 * 5 3 2 7 7 Si 1.86803 * 120.00189 * 337.42904 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.66119 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.66399 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.66821 * 7 5 3 11 11 C 1.46497 * 120.00319 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47387 * 89.99952 * 11 2 1 13 13 H 1.09005 * 110.88835 * 302.57338 * 12 11 2 14 14 C 1.55162 * 111.00577 * 66.45139 * 12 11 2 15 15 C 1.54326 * 102.94039 * 153.57966 * 14 12 11 16 16 N 1.47019 * 107.27159 * 337.80392 * 15 14 12 17 17 C 1.34783 * 125.64734 * 178.98368 * 16 15 14 18 18 O 1.21284 * 119.99707 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99921 * 359.97438 * 17 16 15 20 20 H 1.09001 * 109.86770 * 303.98801 * 19 17 16 21 21 C 1.54092 * 109.88062 * 64.99375 * 19 17 16 22 22 C 1.54819 * 104.18799 * 121.45154 * 21 19 17 23 23 C 1.54996 * 102.08876 * 20.88400 * 22 21 19 24 24 H 1.08994 * 110.62231 * 81.47309 * 23 22 21 25 25 C 1.50697 * 110.61654 * 204.47655 * 23 22 21 26 26 N 1.34784 * 119.99681 * 294.99291 * 25 23 22 27 27 O 1.21279 * 120.00664 * 114.99899 * 25 23 22 28 28 O 1.43740 * 109.87548 * 182.82726 * 19 17 16 29 29 C 1.47425 * 108.70501 * 358.94523 * 16 15 14 30 30 H 1.09001 * 109.47326 * 84.97659 * 1 2 3 31 31 H 1.08998 * 109.47169 * 324.96722 * 1 2 3 32 32 H 1.08999 * 109.46919 * 204.97338 * 1 2 3 33 33 H 0.96997 * 120.00301 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47178 * 209.99836 * 11 2 1 35 35 H 1.08997 * 109.47096 * 329.99338 * 11 2 1 36 36 H 1.08995 * 110.72285 * 271.93820 * 14 12 11 37 37 H 1.09003 * 110.72035 * 35.21610 * 14 12 11 38 38 H 1.08996 * 109.88412 * 97.22843 * 15 14 12 39 39 H 1.09006 * 109.87792 * 218.39287 * 15 14 12 40 40 H 1.08996 * 110.49235 * 240.13256 * 21 19 17 41 41 H 1.09004 * 110.48853 * 2.64595 * 21 19 17 42 42 H 1.08999 * 110.90468 * 139.07423 * 22 21 19 43 43 H 1.08994 * 110.90638 * 262.68528 * 22 21 19 44 44 H 0.96991 * 119.99963 * 0.02562 * 26 25 23 45 45 H 0.97000 * 119.99665 * 179.97438 * 26 25 23 46 46 H 1.08998 * 110.36553 * 265.28369 * 29 16 15 47 47 H 1.09002 * 110.36534 * 142.95870 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.7836 2.0209 -0.5791 5 6 3.3141 1.3152 0.7444 6 7 4.1987 2.2369 0.4280 7 14 3.6258 0.1806 2.1954 8 1 4.4692 -0.9611 1.7588 9 1 4.3256 0.9309 3.2689 10 1 2.3304 -0.3300 2.7117 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 1 1.5156 -1.8032 -1.9924 14 6 3.4224 -0.7335 -2.1600 15 6 4.0764 -1.6247 -3.2369 16 7 3.9385 -3.0192 -2.7921 17 6 4.3657 -4.1048 -3.4670 18 8 4.1982 -5.2125 -3.0022 19 6 5.0514 -3.9424 -4.7991 20 1 4.4090 -3.3851 -5.4809 21 6 6.3881 -3.1986 -4.6131 22 6 7.4492 -4.1812 -5.1659 23 6 6.5967 -5.1006 -6.0771 24 1 6.4281 -4.6311 -7.0461 25 6 7.2594 -6.4436 -6.2446 26 7 8.4449 -6.5356 -6.8793 27 8 6.7262 -7.4418 -5.8084 28 8 5.3543 -5.2335 -5.3535 29 6 3.2562 -3.0333 -1.4853 30 1 -0.3634 0.0900 -1.0237 31 1 -0.3633 0.8415 0.5899 32 1 -0.3633 -0.9316 0.4339 33 1 5.0122 2.3275 0.9483 34 1 3.1500 -1.1385 0.5133 35 1 1.6086 -2.0285 0.5130 36 1 2.8727 0.0873 -2.6206 37 1 4.1721 -0.3550 -1.4652 38 1 3.5673 -1.4877 -4.1908 39 1 5.1316 -1.3704 -3.3376 40 1 6.3917 -2.2713 -5.1859 41 1 6.5675 -2.9946 -3.5575 42 1 8.2049 -3.6515 -5.7459 43 1 7.9090 -4.7515 -4.3589 44 1 8.8715 -5.7374 -7.2279 45 1 8.8717 -7.4000 -6.9868 46 1 3.9864 -3.0598 -0.6765 47 1 2.5831 -3.8881 -1.4180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753355055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:35 Heat of formation + Delta-G solvation = -82.342114 kcal Electronic energy + Delta-G solvation = -28704.095242 eV Core-core repulsion = 24694.985548 eV Total energy + Delta-G solvation = -4009.109694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87950 -39.70480 -38.43683 -37.26429 -35.53920 -34.16601 -32.68571 -31.90534 -31.37254 -30.05905 -29.06187 -26.57132 -25.80425 -24.56086 -23.03946 -21.97379 -21.24763 -20.90726 -19.92304 -19.39709 -18.06739 -17.65681 -16.91919 -16.83656 -16.63462 -15.92314 -15.49335 -15.21957 -14.94019 -14.87823 -14.37007 -14.03191 -13.94474 -13.83989 -13.40517 -13.33961 -12.84734 -12.59102 -12.44209 -12.34219 -12.14316 -12.04623 -11.91765 -11.73979 -11.43601 -11.34398 -11.02401 -10.82105 -10.59340 -10.52404 -10.31705 -10.18425 -10.08362 -10.04730 -9.75589 -9.58691 -9.44587 -8.55971 -8.46446 -6.83111 -6.07273 -3.48248 2.25170 2.52515 2.68700 3.09981 3.25667 3.43356 3.48563 3.75039 4.01835 4.30736 4.41361 4.45931 4.48682 4.60266 4.75302 4.83765 4.98161 5.04390 5.15792 5.21120 5.26918 5.39984 5.46334 5.48827 5.54902 5.61266 5.70861 5.85800 5.96883 6.17656 6.21853 6.22249 6.30140 6.37516 6.44284 6.50701 6.57005 6.67859 6.69704 6.85273 6.91218 7.01338 7.64920 7.90343 7.99335 8.27033 8.32022 8.93527 9.65113 10.07726 11.07922 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022864 B = 0.002826 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.322644 B = 9905.564255 C =10260.053344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.077 0.923 5 C 0.040 3.960 6 N -0.897 5.897 7 Si 0.870 3.130 8 H -0.285 1.285 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.148 3.852 12 C -0.113 4.113 13 H 0.075 0.925 14 C -0.101 4.101 15 C 0.090 3.910 16 N -0.613 5.613 17 C 0.524 3.476 18 O -0.523 6.523 19 C 0.063 3.937 20 H 0.099 0.901 21 C -0.145 4.145 22 C -0.142 4.142 23 C 0.054 3.946 24 H 0.102 0.898 25 C 0.522 3.478 26 N -0.853 5.853 27 O -0.513 6.513 28 O -0.317 6.317 29 C 0.109 3.891 30 H 0.009 0.991 31 H 0.041 0.959 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.401 0.599 45 H 0.405 0.595 46 H 0.066 0.934 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.319 -8.909 -15.628 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.334 5.334 3 C -0.393 4.393 4 H 0.095 0.905 5 C -0.160 4.160 6 N -0.538 5.538 7 Si 0.700 3.300 8 H -0.213 1.213 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.021 3.979 12 C -0.134 4.134 13 H 0.094 0.906 14 C -0.139 4.139 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.311 3.689 18 O -0.398 6.398 19 C 0.002 3.998 20 H 0.117 0.883 21 C -0.183 4.183 22 C -0.180 4.180 23 C -0.007 4.007 24 H 0.119 0.881 25 C 0.305 3.695 26 N -0.420 5.420 27 O -0.386 6.386 28 O -0.234 6.234 29 C -0.013 4.013 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.229 0.771 45 H 0.237 0.763 46 H 0.084 0.916 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.722 -10.213 -14.981 19.707 hybrid contribution 0.843 -0.217 0.523 1.016 sum 8.565 -10.430 -14.458 19.778 Atomic orbital electron populations 1.21123 0.84508 0.98840 0.97704 1.44024 1.00764 1.01908 1.86685 1.18682 1.06061 0.90715 1.23829 0.90497 1.25445 0.96931 0.96243 0.97427 1.69866 1.08706 1.35836 1.39375 0.87045 0.78093 0.80159 0.84684 1.21304 1.22939 1.19453 1.21103 0.96672 0.87877 0.92241 1.23006 0.97612 0.92272 1.00546 0.90640 1.22473 0.98725 0.96497 0.96233 1.22386 1.00852 0.80768 0.99211 1.48514 1.58472 1.06240 1.21597 1.19939 0.79392 0.83747 0.85847 1.90743 1.55777 1.24423 1.68858 1.22638 0.97445 0.85718 0.94003 0.88312 1.22970 0.92136 0.99056 1.04139 1.23130 0.98193 0.96952 0.99703 1.23045 0.86355 0.93623 0.97714 0.88061 1.20162 0.81234 0.90521 0.77572 1.43717 1.23010 1.13680 1.61585 1.90827 1.63264 1.37814 1.46708 1.89152 1.37326 1.28183 1.68733 1.22369 0.95643 0.99259 0.84055 0.97302 0.93988 0.95398 0.92736 0.92628 0.93987 0.89435 0.89568 0.91859 0.91576 0.88709 0.89165 0.88729 0.89618 0.77055 0.76306 0.91583 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.35 10.74 59.84 0.64 2.99 16 2 N -0.61 -13.53 2.41 -181.13 -0.44 -13.97 16 3 C -0.26 -6.78 8.98 -15.05 -0.14 -6.92 16 4 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 5 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 6 N -0.90 -25.29 13.97 55.49 0.78 -24.51 16 7 Si 0.87 21.17 25.09 -169.99 -4.26 16.90 16 8 H -0.29 -6.73 6.68 56.52 0.38 -6.35 16 9 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 C 0.15 2.97 4.09 -4.05 -0.02 2.95 16 12 C -0.11 -1.95 3.29 -88.47 -0.29 -2.24 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.10 -1.74 5.40 -24.89 -0.13 -1.87 16 15 C 0.09 1.21 6.13 -3.06 -0.02 1.19 16 16 N -0.61 -9.48 3.33 -170.52 -0.57 -10.04 16 17 C 0.52 8.65 7.01 -10.98 -0.08 8.57 16 18 O -0.52 -11.04 16.78 -14.02 -0.24 -11.27 16 19 C 0.06 0.78 3.28 -27.31 -0.09 0.69 16 20 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.15 -1.28 5.15 -25.20 -0.13 -1.41 16 22 C -0.14 -1.04 6.57 -24.72 -0.16 -1.21 16 23 C 0.05 0.51 3.76 -26.83 -0.10 0.41 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 25 C 0.52 5.62 7.48 -10.98 -0.08 5.53 16 26 N -0.85 -4.51 8.86 31.22 0.28 -4.23 16 27 O -0.51 -8.60 17.40 -13.51 -0.24 -8.83 16 28 O -0.32 -4.66 10.01 -64.30 -0.64 -5.30 16 29 C 0.11 1.82 6.38 -2.53 -0.02 1.81 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.03 0.47 7.84 -51.93 -0.41 0.06 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.06 1.23 3.35 -51.93 -0.17 1.06 16 35 H 0.04 0.78 7.86 -51.93 -0.41 0.37 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.09 1.74 8.01 -51.93 -0.42 1.32 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.78 6.68 -51.93 -0.35 0.43 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.93 7.23 -51.93 -0.38 0.55 16 42 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 44 H 0.40 0.67 8.83 -40.82 -0.36 0.31 16 45 H 0.41 1.82 8.93 -40.82 -0.36 1.45 16 46 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 47 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -36.72 374.74 -7.88 -44.60 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.49 Total: -0.47 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -0.70 Total: 11.48 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.05 Total: -52.75 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.11 Total: -25.41 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.26 Total: 16.90 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.72 -7.88 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753355055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.742 kcal (2) G-P(sol) polarization free energy of solvation -36.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds