Wall clock time and date at job start Fri Apr 10 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36944 * 119.99460 * 2 1 4 4 H 1.07995 * 120.00754 * 321.74225 * 3 2 1 5 5 C 1.38817 * 119.99655 * 141.74080 * 3 2 1 6 6 N 1.31615 * 119.99982 * 157.42595 * 5 3 2 7 7 Si 1.86803 * 120.00189 * 337.42904 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.66119 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.66399 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.66821 * 7 5 3 11 11 C 1.46497 * 120.00319 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47387 * 89.99952 * 11 2 1 13 13 H 1.09005 * 110.88835 * 302.57338 * 12 11 2 14 14 C 1.55162 * 111.00577 * 66.45139 * 12 11 2 15 15 C 1.54326 * 102.94039 * 153.57966 * 14 12 11 16 16 N 1.47019 * 107.27159 * 337.80392 * 15 14 12 17 17 C 1.34783 * 125.64734 * 178.98368 * 16 15 14 18 18 O 1.21284 * 119.99707 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99921 * 359.97438 * 17 16 15 20 20 H 1.09001 * 109.86770 * 303.98801 * 19 17 16 21 21 C 1.54092 * 109.88062 * 64.99375 * 19 17 16 22 22 C 1.54819 * 104.18799 * 121.45154 * 21 19 17 23 23 C 1.54996 * 102.08876 * 20.88400 * 22 21 19 24 24 H 1.08994 * 110.62231 * 81.47309 * 23 22 21 25 25 C 1.50697 * 110.61654 * 204.47655 * 23 22 21 26 26 N 1.34784 * 119.99681 * 294.99291 * 25 23 22 27 27 O 1.21279 * 120.00664 * 114.99899 * 25 23 22 28 28 O 1.43740 * 109.87548 * 182.82726 * 19 17 16 29 29 C 1.47425 * 108.70501 * 358.94523 * 16 15 14 30 30 H 1.09001 * 109.47326 * 84.97659 * 1 2 3 31 31 H 1.08998 * 109.47169 * 324.96722 * 1 2 3 32 32 H 1.08999 * 109.46919 * 204.97338 * 1 2 3 33 33 H 0.96997 * 120.00301 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47178 * 209.99836 * 11 2 1 35 35 H 1.08997 * 109.47096 * 329.99338 * 11 2 1 36 36 H 1.08995 * 110.72285 * 271.93820 * 14 12 11 37 37 H 1.09003 * 110.72035 * 35.21610 * 14 12 11 38 38 H 1.08996 * 109.88412 * 97.22843 * 15 14 12 39 39 H 1.09006 * 109.87792 * 218.39287 * 15 14 12 40 40 H 1.08996 * 110.49235 * 240.13256 * 21 19 17 41 41 H 1.09004 * 110.48853 * 2.64595 * 21 19 17 42 42 H 1.08999 * 110.90468 * 139.07423 * 22 21 19 43 43 H 1.08994 * 110.90638 * 262.68528 * 22 21 19 44 44 H 0.96991 * 119.99963 * 0.02562 * 26 25 23 45 45 H 0.97000 * 119.99665 * 179.97438 * 26 25 23 46 46 H 1.08998 * 110.36553 * 265.28369 * 29 16 15 47 47 H 1.09002 * 110.36534 * 142.95870 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.7836 2.0209 -0.5791 5 6 3.3141 1.3152 0.7444 6 7 4.1987 2.2369 0.4280 7 14 3.6258 0.1806 2.1954 8 1 4.4692 -0.9611 1.7588 9 1 4.3256 0.9309 3.2689 10 1 2.3304 -0.3300 2.7117 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 1 1.5156 -1.8032 -1.9924 14 6 3.4224 -0.7335 -2.1600 15 6 4.0764 -1.6247 -3.2369 16 7 3.9385 -3.0192 -2.7921 17 6 4.3657 -4.1048 -3.4670 18 8 4.1982 -5.2125 -3.0022 19 6 5.0514 -3.9424 -4.7991 20 1 4.4090 -3.3851 -5.4809 21 6 6.3881 -3.1986 -4.6131 22 6 7.4492 -4.1812 -5.1659 23 6 6.5967 -5.1006 -6.0771 24 1 6.4281 -4.6311 -7.0461 25 6 7.2594 -6.4436 -6.2446 26 7 8.4449 -6.5356 -6.8793 27 8 6.7262 -7.4418 -5.8084 28 8 5.3543 -5.2335 -5.3535 29 6 3.2562 -3.0333 -1.4853 30 1 -0.3634 0.0900 -1.0237 31 1 -0.3633 0.8415 0.5899 32 1 -0.3633 -0.9316 0.4339 33 1 5.0122 2.3275 0.9483 34 1 3.1500 -1.1385 0.5133 35 1 1.6086 -2.0285 0.5130 36 1 2.8727 0.0873 -2.6206 37 1 4.1721 -0.3550 -1.4652 38 1 3.5673 -1.4877 -4.1908 39 1 5.1316 -1.3704 -3.3376 40 1 6.3917 -2.2713 -5.1859 41 1 6.5675 -2.9946 -3.5575 42 1 8.2049 -3.6515 -5.7459 43 1 7.9090 -4.7515 -4.3589 44 1 8.8715 -5.7374 -7.2279 45 1 8.8717 -7.4000 -6.9868 46 1 3.9864 -3.0598 -0.6765 47 1 2.5831 -3.8881 -1.4180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753355055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:35 Heat of formation + Delta-G solvation = -110.984721 kcal Electronic energy + Delta-G solvation = -28705.337279 eV Core-core repulsion = 24694.985548 eV Total energy + Delta-G solvation = -4010.351731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82956 -40.77695 -39.49293 -38.60011 -37.16431 -34.89744 -33.95453 -33.42527 -32.66286 -30.98788 -30.36787 -28.13566 -27.34608 -25.68386 -24.08850 -23.00840 -22.82755 -21.62443 -21.40270 -20.53111 -18.89458 -18.72451 -18.44676 -17.78649 -17.51059 -17.25582 -17.01760 -16.51319 -16.01221 -15.72373 -15.65410 -15.44086 -15.13256 -15.05855 -14.72948 -14.56409 -14.35067 -14.13023 -13.81383 -13.66990 -13.29760 -13.23458 -13.14382 -12.81513 -12.72085 -12.65336 -12.46367 -12.18847 -12.02356 -11.89387 -11.70678 -11.58628 -11.46640 -11.26067 -10.95593 -10.74486 -10.60644 -10.54964 -9.73512 -8.67223 -8.14653 -5.51181 1.30821 1.43573 1.44129 1.49869 1.51829 1.61246 2.24144 2.44718 2.98189 3.06630 3.23728 3.39870 3.55201 3.71709 3.76390 3.81970 3.90380 4.01154 4.05997 4.09250 4.29885 4.33369 4.41032 4.51832 4.56458 4.58429 4.73367 4.75526 4.79362 4.84323 4.89644 4.95490 4.99894 5.07468 5.13480 5.16226 5.19119 5.40505 5.54781 5.58375 5.86129 6.00380 6.24709 6.41458 6.44363 7.03002 7.05008 7.29409 7.68788 8.13073 9.04271 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022864 B = 0.002826 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.322644 B = 9905.564255 C =10260.053344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.622 5.622 3 C -0.243 4.243 4 H 0.046 0.954 5 C 0.000 4.000 6 N -0.936 5.936 7 Si 0.919 3.081 8 H -0.278 1.278 9 H -0.312 1.312 10 H -0.266 1.266 11 C 0.143 3.857 12 C -0.102 4.102 13 H 0.086 0.914 14 C -0.098 4.098 15 C 0.099 3.901 16 N -0.610 5.610 17 C 0.516 3.484 18 O -0.582 6.582 19 C 0.065 3.935 20 H 0.131 0.869 21 C -0.142 4.142 22 C -0.133 4.133 23 C 0.049 3.951 24 H 0.146 0.854 25 C 0.516 3.484 26 N -0.823 5.823 27 O -0.589 6.589 28 O -0.366 6.366 29 C 0.111 3.889 30 H 0.022 0.978 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.137 0.863 41 H 0.071 0.929 42 H 0.146 0.854 43 H 0.061 0.939 44 H 0.423 0.577 45 H 0.411 0.589 46 H 0.055 0.945 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.104 -8.606 -17.947 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.346 5.346 3 C -0.373 4.373 4 H 0.064 0.936 5 C -0.198 4.198 6 N -0.579 5.579 7 Si 0.749 3.251 8 H -0.206 1.206 9 H -0.241 1.241 10 H -0.191 1.191 11 C 0.017 3.983 12 C -0.123 4.123 13 H 0.104 0.896 14 C -0.136 4.136 15 C -0.022 4.022 16 N -0.344 5.344 17 C 0.305 3.695 18 O -0.461 6.461 19 C 0.004 3.996 20 H 0.148 0.852 21 C -0.180 4.180 22 C -0.171 4.171 23 C -0.012 4.012 24 H 0.163 0.837 25 C 0.300 3.700 26 N -0.390 5.390 27 O -0.468 6.468 28 O -0.284 6.284 29 C -0.012 4.012 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.155 0.845 41 H 0.090 0.910 42 H 0.164 0.836 43 H 0.080 0.920 44 H 0.256 0.744 45 H 0.243 0.757 46 H 0.073 0.927 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.542 -9.873 -17.347 21.711 hybrid contribution 0.570 -0.295 1.187 1.350 sum 9.112 -10.168 -16.160 21.156 Atomic orbital electron populations 1.21221 0.82437 0.99996 0.98647 1.44154 1.02147 1.01422 1.86928 1.18480 1.05614 0.91149 1.22083 0.93605 1.25812 0.97157 0.97573 0.99214 1.69952 1.09413 1.38026 1.40545 0.86249 0.77981 0.78855 0.81995 1.20580 1.24141 1.19058 1.21144 0.95743 0.87404 0.93990 1.22801 0.98190 0.92498 0.98849 0.89615 1.22293 0.97854 0.96781 0.96662 1.22431 1.02431 0.78490 0.98894 1.48560 1.57808 1.07104 1.20944 1.20908 0.78590 0.82773 0.87180 1.90710 1.58182 1.26633 1.70618 1.22823 0.99342 0.85798 0.91594 0.85189 1.23071 0.90351 1.00593 1.03942 1.23183 0.98501 0.96193 0.99198 1.23449 0.84928 0.93213 0.99562 0.83655 1.20651 0.82031 0.90388 0.76930 1.43494 1.21104 1.15146 1.59247 1.90796 1.65537 1.40171 1.50295 1.89116 1.39787 1.29826 1.69659 1.22214 0.95433 0.98679 0.84880 0.95976 0.94504 0.92849 0.92969 0.94767 0.92160 0.90542 0.92992 0.88555 0.89192 0.84468 0.90985 0.83650 0.91974 0.74444 0.75653 0.92685 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.38 10.74 127.77 1.37 5.75 16 2 N -0.62 -26.98 2.41 -726.97 -1.75 -28.73 16 3 C -0.24 -12.57 8.98 84.03 0.76 -11.81 16 4 H 0.05 2.64 8.06 -2.91 -0.02 2.61 16 5 C 0.00 -0.01 5.29 84.86 0.45 0.44 16 6 N -0.94 -53.79 13.97 21.65 0.30 -53.48 16 7 Si 0.92 44.07 25.09 68.60 1.72 45.79 16 8 H -0.28 -12.89 6.68 99.48 0.66 -12.22 16 9 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 C 0.14 5.59 4.09 86.38 0.35 5.95 16 12 C -0.10 -3.41 3.29 -9.40 -0.03 -3.44 16 13 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 14 C -0.10 -3.25 5.40 31.79 0.17 -3.08 16 15 C 0.10 2.38 6.13 86.73 0.53 2.91 16 16 N -0.61 -18.02 3.33 -811.78 -2.70 -20.72 16 17 C 0.52 16.66 7.01 87.66 0.61 17.28 16 18 O -0.58 -25.29 16.78 15.67 0.26 -25.03 16 19 C 0.07 1.44 3.28 30.22 0.10 1.54 16 20 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 21 C -0.14 -1.95 5.15 31.58 0.16 -1.79 16 22 C -0.13 -1.46 6.57 31.90 0.21 -1.25 16 23 C 0.05 0.78 3.76 30.53 0.11 0.89 16 24 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 25 C 0.52 10.50 7.48 87.65 0.66 11.15 16 26 N -0.82 -6.65 8.86 -173.53 -1.54 -8.19 16 27 O -0.59 -20.41 17.40 15.21 0.26 -20.15 16 28 O -0.37 -10.37 10.01 -121.18 -1.21 -11.58 16 29 C 0.11 3.66 6.38 86.86 0.55 4.21 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 1.35 8.08 -2.39 -0.02 1.33 16 32 H 0.05 1.66 7.84 -2.39 -0.02 1.64 16 33 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.03 1.50 3.35 -2.39 -0.01 1.49 16 35 H 0.06 2.12 7.86 -2.39 -0.02 2.10 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.05 2.09 8.01 -2.39 -0.02 2.07 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.09 1.79 6.68 -2.38 -0.02 1.78 16 40 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 1.29 7.23 -2.38 -0.02 1.27 16 42 H 0.15 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.06 0.99 8.05 -2.39 -0.02 0.97 16 44 H 0.42 -0.32 8.83 -92.72 -0.82 -1.14 16 45 H 0.41 2.92 8.93 -92.71 -0.83 2.09 16 46 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 47 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 Total: -1.00 -86.88 374.74 0.67 -86.21 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -0.69 Total: 7.12 kcal Atomic # 6 Polarization: 22.75 SS G_CDS: 6.01 Total: 28.76 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -5.69 Total: -111.13 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -0.69 Total: -56.76 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.72 Total: 45.79 kcal Total: -86.88 0.67 -86.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753355055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.771 kcal (2) G-P(sol) polarization free energy of solvation -86.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds