Wall clock time and date at job start Fri Apr 10 2020 18:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99608 * 2 1 4 4 H 1.08998 * 109.47034 * 329.99966 * 3 2 1 5 5 C 1.53004 * 109.46956 * 89.99855 * 3 2 1 6 6 C 1.50703 * 109.46933 * 209.99672 * 3 2 1 7 7 O 1.21279 * 120.00045 * 355.00294 * 6 3 2 8 8 N 1.34774 * 119.99700 * 174.99974 * 6 3 2 9 9 C 1.49427 * 127.81805 * 359.65778 * 8 6 3 10 10 C 1.54427 * 103.83351 * 221.54343 * 9 8 6 11 11 H 1.08993 * 112.56586 * 98.42720 * 10 9 8 12 12 C 1.54403 * 108.68836 * 223.82869 * 10 9 8 13 13 N 1.48735 * 104.45967 * 137.05658 * 12 10 9 14 14 C 1.46898 * 110.99926 * 199.12374 * 13 12 10 15 15 C 1.50703 * 109.46691 * 169.99803 * 14 13 12 16 16 O 1.21286 * 120.00288 * 0.02562 * 15 14 13 17 17 N 1.34785 * 119.99435 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99543 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00252 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99711 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00136 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99873 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47393 * 59.99369 * 22 20 18 24 24 H 1.48499 * 109.47166 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46844 * 299.99187 * 22 20 18 26 26 C 1.48836 * 103.44085 * 318.36792 * 13 12 10 27 27 C 1.54402 * 104.43887 * 41.62428 * 26 13 12 28 28 H 1.09001 * 113.06189 * 97.85852 * 27 26 13 29 29 C 1.48321 * 128.20327 * 179.97438 * 8 6 3 30 30 H 1.08995 * 109.47309 * 300.00182 * 1 2 3 31 31 H 1.09000 * 109.47144 * 60.00571 * 1 2 3 32 32 H 1.09003 * 109.46857 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47158 * 60.00187 * 5 3 2 34 34 H 1.08996 * 109.46701 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47280 * 299.99838 * 5 3 2 36 36 H 1.08997 * 110.38373 * 103.15941 * 9 8 6 37 37 H 1.08998 * 111.03266 * 340.24704 * 9 8 6 38 38 H 1.09002 * 110.45848 * 255.83760 * 12 10 9 39 39 H 1.09003 * 110.45756 * 18.27778 * 12 10 9 40 40 H 1.08996 * 109.47366 * 290.00232 * 14 13 12 41 41 H 1.08997 * 109.47019 * 50.00305 * 14 13 12 42 42 H 0.96993 * 119.99861 * 0.02562 * 17 15 14 43 43 H 0.96996 * 119.99579 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.34028 * 282.91632 * 26 13 12 45 45 H 1.08996 * 110.59735 * 160.46726 * 26 13 12 46 46 H 1.08999 * 110.45080 * 19.37383 * 29 8 6 47 47 H 1.08992 * 110.45394 * 256.81718 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7715 1.4426 6 6 3.3387 1.2640 -0.7104 7 8 3.7897 0.2046 -1.0913 8 7 4.0254 2.4041 -0.9223 9 6 3.6346 3.7941 -0.5373 10 6 4.0312 4.6426 -1.7651 11 1 3.1861 4.8484 -2.4219 12 6 4.7265 5.9303 -1.2729 13 7 5.8873 6.0985 -2.1875 14 6 6.8946 6.9923 -1.6008 15 6 8.1512 6.9467 -2.4315 16 8 8.2024 6.2397 -3.4156 17 7 9.2179 7.6926 -2.0812 18 6 10.3609 7.6515 -2.8372 19 1 10.4068 7.0212 -3.7130 20 6 11.4607 8.4199 -2.4758 21 7 11.4051 9.1864 -1.4098 22 14 13.0179 8.3645 -3.5062 23 1 12.7114 8.8054 -4.8907 24 1 14.0361 9.2684 -2.9133 25 1 13.5440 6.9760 -3.5338 26 6 6.4170 4.7152 -2.3322 27 6 5.1573 3.8331 -2.4708 28 1 4.9167 3.5918 -3.5061 29 6 5.3365 2.5738 -1.5947 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.8829 1.0776 1.9564 34 1 2.6612 2.7670 1.4425 35 1 1.2567 1.8015 1.9564 36 1 4.1914 4.1148 0.3432 37 1 2.5619 3.8631 -0.3570 38 1 4.0515 6.7824 -1.3533 39 1 5.0664 5.8104 -0.2442 40 1 6.5088 8.0115 -1.5812 41 1 7.1191 6.6692 -0.5843 42 1 9.1768 8.2583 -1.2944 43 1 12.1728 9.7231 -1.1578 44 1 6.9846 4.4322 -1.4458 45 1 7.0389 4.6340 -3.2237 46 1 5.5612 1.7065 -2.2155 47 1 6.1246 2.7308 -0.8584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754840011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:48 Heat of formation + Delta-G solvation = -113.914114 kcal Electronic energy + Delta-G solvation = -28066.943575 eV Core-core repulsion = 24056.464816 eV Total energy + Delta-G solvation = -4010.478759 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71511 -40.58162 -39.66336 -38.44794 -36.81334 -35.84436 -33.53224 -33.20749 -32.03790 -31.38112 -28.76380 -27.71132 -26.95544 -26.64670 -25.41360 -23.74111 -22.52474 -21.11769 -20.56763 -20.41462 -19.78887 -18.57847 -17.67791 -17.66598 -17.11323 -16.98215 -16.65631 -16.34090 -16.21620 -15.99641 -15.80399 -15.50359 -15.29818 -14.74363 -14.56314 -14.21103 -14.13385 -13.62642 -13.54006 -13.48761 -13.24915 -13.10151 -13.03770 -12.99686 -12.76014 -12.61684 -12.43306 -12.40334 -12.14713 -12.10477 -11.89487 -11.78582 -11.63118 -11.43812 -11.06368 -10.56281 -10.19635 -10.00209 -9.90394 -9.34183 -8.46509 -5.94676 1.39151 1.41381 1.46440 1.51771 1.58585 2.05754 2.28681 2.84907 2.90275 3.18980 3.22051 3.41121 3.48071 3.67262 3.85862 3.87134 4.00822 4.05129 4.22002 4.26521 4.31599 4.35780 4.45552 4.48962 4.54445 4.55408 4.57832 4.66295 4.68993 4.72357 4.79832 4.82163 4.86562 4.89786 4.99954 5.13273 5.18902 5.30666 5.32091 5.41680 5.85576 5.93085 6.06992 6.12634 6.43819 6.61378 7.02889 7.13643 7.56914 8.13148 8.70536 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.031777 B = 0.002177 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.920435 B =12857.973124 C =13141.993448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.078 3.922 4 H 0.118 0.882 5 C -0.167 4.167 6 C 0.525 3.475 7 O -0.583 6.583 8 N -0.621 5.621 9 C 0.103 3.897 10 C -0.092 4.092 11 H 0.114 0.886 12 C 0.035 3.965 13 N -0.505 5.505 14 C 0.046 3.954 15 C 0.437 3.563 16 O -0.616 6.616 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.044 3.956 27 C -0.095 4.095 28 H 0.088 0.912 29 C 0.111 3.889 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.026 -7.359 9.386 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.017 3.983 4 H 0.136 0.864 5 C -0.225 4.225 6 C 0.315 3.685 7 O -0.462 6.462 8 N -0.355 5.355 9 C -0.018 4.018 10 C -0.112 4.112 11 H 0.132 0.868 12 C -0.092 4.092 13 N -0.230 5.230 14 C -0.085 4.085 15 C 0.225 3.775 16 O -0.502 6.502 17 N -0.210 5.210 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.084 4.084 27 C -0.115 4.115 28 H 0.107 0.893 29 C -0.012 4.012 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.139 0.861 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.089 0.911 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.053 0.947 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.713 -8.277 8.154 26.406 hybrid contribution 1.556 0.050 0.369 1.600 sum -22.157 -8.227 8.523 25.125 Atomic orbital electron populations 1.23106 0.78396 1.04208 1.01650 1.88012 1.22161 1.26538 1.95200 1.21996 0.91416 0.86972 0.97934 0.86425 1.22291 1.04517 1.02574 0.93071 1.20866 0.86919 0.81918 0.78794 1.90701 1.71017 1.31254 1.53263 1.49437 1.20978 1.07354 1.57737 1.23264 1.03572 0.78001 0.96965 1.22974 0.97883 0.93655 0.96668 0.86760 1.23506 0.92487 0.98514 0.94741 1.65534 1.06573 1.07852 1.43003 1.21971 0.90189 1.00545 0.95784 1.20837 0.85867 0.83087 0.87744 1.90455 1.84081 1.44725 1.30980 1.41922 1.11857 1.40361 1.26898 1.19597 0.91455 1.25843 1.09266 0.90407 1.26001 1.01965 0.95393 0.97891 1.69659 1.33062 1.27684 1.25603 0.85025 0.77104 0.78309 0.78124 1.19793 1.19482 1.19869 1.23246 0.95871 0.87989 1.01262 1.22861 0.95312 0.93672 0.99649 0.89321 1.22501 0.85356 0.97777 0.95515 0.91494 0.92725 0.88786 0.93149 0.88762 0.88720 0.88624 0.86137 0.87679 0.91775 0.86832 0.91056 0.76975 0.91323 0.94663 0.91102 0.91830 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.82 113.37 1.23 1.46 16 2 O -0.40 -8.32 9.89 -129.99 -1.29 -9.61 16 3 C 0.08 1.23 2.43 29.85 0.07 1.30 16 4 H 0.12 1.06 7.40 -2.39 -0.02 1.04 16 5 C -0.17 -1.73 9.34 71.98 0.67 -1.06 16 6 C 0.53 12.96 7.30 87.66 0.64 13.60 16 7 O -0.58 -21.06 16.79 15.96 0.27 -20.79 16 8 N -0.62 -12.45 3.33 -803.95 -2.67 -15.13 16 9 C 0.10 1.15 5.00 86.30 0.43 1.58 16 10 C -0.09 -1.43 4.13 -8.93 -0.04 -1.47 16 11 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 12 C 0.03 0.61 5.97 86.42 0.52 1.12 16 13 N -0.51 -14.76 5.35 -884.70 -4.73 -19.49 16 14 C 0.05 1.49 5.56 85.56 0.48 1.97 16 15 C 0.44 20.17 7.50 87.66 0.66 20.83 16 16 O -0.62 -33.08 13.29 -3.05 -0.04 -33.12 16 17 N -0.57 -28.83 5.29 -306.98 -1.62 -30.45 16 18 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.67 5.50 84.92 0.47 -0.21 16 21 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 22 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.04 1.39 4.90 86.40 0.42 1.81 16 27 C -0.09 -2.24 4.17 -8.93 -0.04 -2.27 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 C 0.11 2.68 6.61 86.52 0.57 3.25 16 30 H 0.07 0.39 7.87 -2.39 -0.02 0.37 16 31 H 0.05 0.45 8.09 -2.39 -0.02 0.43 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.59 6.00 -2.39 -0.01 0.58 16 35 H 0.09 0.55 7.87 -2.39 -0.02 0.53 16 36 H 0.10 0.86 7.16 -2.39 -0.02 0.84 16 37 H 0.12 0.50 6.71 -2.39 -0.02 0.48 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 0.93 6.89 -2.39 -0.02 0.91 16 40 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.07 1.99 7.90 -2.39 -0.02 1.97 16 42 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 43 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.04 1.11 7.05 -2.39 -0.02 1.09 16 45 H 0.07 2.90 6.01 -2.39 -0.01 2.89 16 46 H 0.06 1.79 7.88 -2.39 -0.02 1.77 16 47 H 0.08 1.83 7.17 -2.39 -0.02 1.81 16 Total: -1.00 -79.63 372.96 -0.63 -80.26 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.26 Total: 28.16 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 6.89 Total: 24.07 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -8.75 Total: -113.86 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -1.06 Total: -63.52 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -79.63 -0.63 -80.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754840011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.659 kcal (2) G-P(sol) polarization free energy of solvation -79.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds