Wall clock time and date at job start Fri Apr 10 2020 18:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46759 * 124.34829 * 2 1 4 4 C 1.54480 * 105.53184 * 163.21428 * 3 2 1 5 5 H 1.09002 * 110.96811 * 143.33025 * 4 3 2 6 6 C 1.50700 * 110.97311 * 267.09142 * 4 3 2 7 7 O 1.21285 * 119.99862 * 355.96714 * 6 4 3 8 8 N 1.34767 * 120.00221 * 175.97040 * 6 4 3 9 9 C 1.46507 * 119.99910 * 184.19068 * 8 6 4 10 10 C 1.52995 * 109.54526 * 300.29510 * 9 8 6 11 11 N 1.46500 * 109.47429 * 305.37276 * 10 9 8 12 12 C 1.36934 * 120.00264 * 185.08232 * 11 10 9 13 13 H 1.07998 * 119.99942 * 4.93168 * 12 11 10 14 14 C 1.38807 * 120.00246 * 184.92529 * 12 11 10 15 15 N 1.31619 * 120.00180 * 184.03657 * 14 12 11 16 16 Si 1.86799 * 119.99755 * 4.03317 * 14 12 11 17 17 H 1.48505 * 109.47192 * 92.65242 * 16 14 12 18 18 H 1.48501 * 109.47039 * 212.64657 * 16 14 12 19 19 H 1.48494 * 109.47524 * 332.64862 * 16 14 12 20 20 C 1.53183 * 109.54110 * 180.02562 * 9 8 6 21 21 C 1.53090 * 109.16547 * 297.11306 * 20 9 8 22 22 O 1.42901 * 109.41581 * 302.39393 * 21 20 9 23 23 C 1.42895 * 114.09833 * 61.15778 * 22 21 20 24 24 C 1.53096 * 109.41566 * 298.84149 * 23 22 21 25 25 C 1.54627 * 101.76601 * 25.21228 * 4 3 2 26 26 C 1.34425 * 124.34916 * 179.83111 * 2 1 3 27 27 O 1.21274 * 124.94061 * 0.42956 * 26 2 1 28 28 H 1.08996 * 109.47079 * 185.20606 * 1 2 3 29 29 H 1.08994 * 109.46671 * 305.20677 * 1 2 3 30 30 H 1.09003 * 109.46941 * 65.20733 * 1 2 3 31 31 H 1.09003 * 110.38898 * 44.10707 * 3 2 1 32 32 H 1.09000 * 110.04419 * 282.14218 * 3 2 1 33 33 H 0.97005 * 120.00495 * 4.18595 * 8 6 4 34 34 H 1.09009 * 109.46963 * 65.37066 * 10 9 8 35 35 H 1.08993 * 109.47315 * 185.36580 * 10 9 8 36 36 H 0.97003 * 119.99930 * 5.09237 * 11 10 9 37 37 H 0.96998 * 120.00141 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.51973 * 57.02351 * 20 9 8 39 39 H 1.09006 * 109.51994 * 177.20644 * 20 9 8 40 40 H 1.08996 * 109.47990 * 182.40784 * 21 20 9 41 41 H 1.09005 * 109.47795 * 62.37586 * 21 20 9 42 42 H 1.09006 * 109.48147 * 178.85885 * 23 22 21 43 43 H 1.09004 * 109.49288 * 58.82934 * 23 22 21 44 44 H 1.08996 * 109.52060 * 297.70073 * 24 23 22 45 45 H 1.09002 * 109.56950 * 177.54725 * 24 23 22 46 46 H 1.09000 * 110.48314 * 216.52496 * 25 4 3 47 47 H 1.08997 * 110.48483 * 93.87864 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7030 0.7492 0.4298 5 1 4.4749 1.3009 -0.1067 6 6 3.8839 0.8838 1.9199 7 8 3.0061 1.3786 2.5950 8 7 5.0209 0.4546 2.5022 9 6 5.1601 0.5008 3.9599 10 6 5.0151 1.9454 4.4424 11 7 5.9723 2.7963 3.7310 12 6 6.0995 4.1166 4.0713 13 1 5.5536 4.5117 4.9152 14 6 6.9303 4.9470 3.3317 15 7 7.1147 6.1954 3.7055 16 14 7.7868 4.2926 1.8061 17 1 6.9508 4.5719 0.6109 18 1 9.1053 4.9587 1.6545 19 1 7.9850 2.8270 1.9399 20 6 6.5362 -0.0397 4.3606 21 6 6.6407 -1.5085 3.9419 22 8 5.5849 -2.2529 4.5528 23 6 4.2749 -1.8228 4.1777 24 6 4.0753 -0.3665 4.6059 25 6 3.6898 -0.7378 0.0061 26 6 2.2235 -1.1098 0.0033 27 8 1.7946 -2.2442 -0.0008 28 1 -0.3633 -1.0234 0.0932 29 1 -0.3632 0.5925 0.8397 30 1 -0.3633 0.4310 -0.9330 31 1 1.9016 1.9392 0.7111 32 1 2.3260 1.6417 -1.0011 33 1 5.7473 0.1150 1.9562 34 1 4.0016 2.2946 4.2445 35 1 5.2130 1.9924 5.5131 36 1 6.5158 2.4245 3.0187 37 1 7.6949 6.7759 3.1885 38 1 7.3140 0.5378 3.8609 39 1 6.6587 0.0408 5.4408 40 1 7.6018 -1.9104 4.2627 41 1 6.5586 -1.5841 2.8576 42 1 3.5315 -2.4511 4.6684 43 1 4.1616 -1.9025 3.0965 44 1 4.1480 -0.2927 5.6909 45 1 3.0930 -0.0222 4.2824 46 1 4.2360 -1.3450 0.7281 47 1 4.1149 -0.8542 -0.9908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755096193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:57 Heat of formation + Delta-G solvation = -90.133779 kcal Electronic energy + Delta-G solvation = -30273.949833 eV Core-core repulsion = 26264.502267 eV Total energy + Delta-G solvation = -4009.447566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24381 -40.15872 -38.44116 -36.52138 -35.77805 -33.91756 -33.27565 -31.57733 -31.20475 -30.79427 -27.90700 -27.19601 -26.74816 -23.90448 -23.76882 -23.13772 -21.36934 -20.57973 -19.74725 -19.24767 -17.95389 -17.76460 -16.92063 -16.25677 -16.06306 -15.89528 -15.60655 -15.50132 -14.95440 -14.63425 -14.49829 -14.07448 -13.87230 -13.75270 -13.69049 -13.38684 -12.94948 -12.81986 -12.63657 -12.48045 -12.45059 -12.28643 -12.10825 -11.89621 -11.82757 -11.68824 -11.31029 -11.21707 -10.95584 -10.67973 -10.39500 -10.21409 -10.04115 -9.70855 -9.63606 -9.49494 -8.91489 -8.91167 -8.77219 -7.20560 -5.79093 -3.13202 2.37076 2.66700 2.82722 3.10593 3.23092 3.29320 3.37337 3.84403 4.02617 4.08840 4.44065 4.53118 4.58265 4.71303 4.83504 4.93586 4.99857 5.05505 5.08191 5.10093 5.14275 5.27177 5.31178 5.39697 5.49803 5.51045 5.54501 5.59203 5.61126 5.63989 5.68611 5.87983 5.90716 6.02923 6.15620 6.22534 6.26474 6.35727 6.71167 6.88046 6.89711 7.14791 7.56517 7.95327 7.99412 8.30205 8.40008 9.19768 9.91220 10.12554 11.39829 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.005281 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.407665 B = 5300.526964 C = 6752.713936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.616 5.616 3 C 0.116 3.884 4 C -0.130 4.130 5 H 0.126 0.874 6 C 0.528 3.472 7 O -0.515 6.515 8 N -0.717 5.717 9 C 0.171 3.829 10 C 0.148 3.852 11 N -0.750 5.750 12 C -0.235 4.235 13 H 0.089 0.911 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.887 3.113 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.155 4.155 21 C 0.061 3.939 22 O -0.383 6.383 23 C 0.066 3.934 24 C -0.162 4.162 25 C -0.146 4.146 26 C 0.517 3.483 27 O -0.536 6.536 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.395 0.605 34 H 0.053 0.947 35 H 0.034 0.966 36 H 0.359 0.641 37 H 0.258 0.742 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.461 -15.891 -7.813 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.350 5.350 3 C -0.007 4.007 4 C -0.152 4.152 5 H 0.144 0.856 6 C 0.313 3.687 7 O -0.390 6.390 8 N -0.369 5.369 9 C 0.086 3.914 10 C 0.020 3.980 11 N -0.396 5.396 12 C -0.365 4.365 13 H 0.106 0.894 14 C -0.193 4.193 15 N -0.583 5.583 16 Si 0.718 3.282 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.209 1.209 20 C -0.193 4.193 21 C -0.016 4.016 22 O -0.302 6.302 23 C -0.010 4.010 24 C -0.201 4.201 25 C -0.186 4.186 26 C 0.305 3.695 27 O -0.413 6.413 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.229 0.771 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.192 0.808 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.122 0.878 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.443 -16.053 -7.058 19.050 hybrid contribution 1.158 0.042 -1.604 1.979 sum -6.285 -16.010 -8.662 19.258 Atomic orbital electron populations 1.21562 0.77786 1.03620 1.01751 1.48078 1.06744 1.07246 1.72913 1.22031 0.88343 0.87857 1.02512 1.22369 1.00098 0.97526 0.95167 0.85584 1.19942 0.82292 0.77512 0.88960 1.90674 1.41983 1.42025 1.64273 1.45986 1.17491 1.65728 1.07715 1.20689 0.94742 0.97091 0.78899 1.21071 0.95208 0.86568 0.95174 1.42608 1.45760 1.08346 1.42854 1.19058 1.22563 0.83760 1.11155 0.89368 1.24676 1.00231 0.95522 0.98901 1.69700 1.42113 1.05588 1.40889 0.86519 0.79281 0.77490 0.84895 1.21309 1.21847 1.20887 1.22459 0.96838 0.96024 1.04028 1.22603 0.91121 0.91339 0.96565 1.87918 1.14351 1.57693 1.70190 1.22514 0.84529 0.94889 0.99106 1.22517 1.00903 0.94920 1.01730 1.22370 0.95724 0.95288 1.05235 1.20764 0.89079 0.84458 0.75232 1.90720 1.78578 1.21041 1.50967 0.90097 0.91479 0.92166 0.87880 0.90156 0.77088 0.92902 0.94857 0.80813 0.93139 0.89606 0.89076 0.88703 0.93669 0.89130 0.93628 0.90013 0.88964 0.87767 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 11.14 59.85 0.67 1.54 16 2 N -0.62 -6.82 3.33 -180.29 -0.60 -7.42 16 3 C 0.12 1.17 6.71 -3.12 -0.02 1.15 16 4 C -0.13 -1.31 3.55 -90.14 -0.32 -1.63 16 5 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 6 C 0.53 7.26 6.53 -10.99 -0.07 7.19 16 7 O -0.51 -8.82 11.82 5.55 0.07 -8.76 16 8 N -0.72 -9.23 3.36 -47.44 -0.16 -9.39 16 9 C 0.17 2.48 0.32 -131.63 -0.04 2.43 16 10 C 0.15 2.84 4.86 -4.04 -0.02 2.82 16 11 N -0.75 -16.92 4.95 -59.91 -0.30 -17.22 16 12 C -0.24 -6.54 10.47 -15.06 -0.16 -6.70 16 13 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 14 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 15 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16 16 Si 0.89 21.16 27.95 -169.99 -4.75 16.41 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.05 6.23 56.52 0.35 -5.70 16 20 C -0.16 -2.02 4.81 -26.59 -0.13 -2.15 16 21 C 0.06 0.66 6.67 37.20 0.25 0.91 16 22 O -0.38 -4.90 10.77 -35.23 -0.38 -5.28 16 23 C 0.07 0.81 6.68 37.21 0.25 1.06 16 24 C -0.16 -2.18 4.77 -26.59 -0.13 -2.31 16 25 C -0.15 -1.32 6.39 -26.74 -0.17 -1.49 16 26 C 0.52 6.47 8.02 -10.86 -0.09 6.38 16 27 O -0.54 -8.57 17.36 5.56 0.10 -8.47 16 28 H 0.08 0.81 7.55 -51.93 -0.39 0.41 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 1.22 6.97 -51.93 -0.36 0.86 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.39 4.12 7.52 -40.82 -0.31 3.81 16 34 H 0.05 1.14 6.20 -51.92 -0.32 0.82 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.36 7.68 4.42 -40.82 -0.18 7.50 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.09 1.19 7.44 -51.93 -0.39 0.80 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.43 7.09 -51.93 -0.37 0.06 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.55 7.75 -51.93 -0.40 0.15 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.39 6.29 -51.93 -0.33 1.06 16 46 H 0.10 0.92 7.73 -51.93 -0.40 0.52 16 47 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -35.71 367.10 -7.08 -42.79 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -7.28 Total: 10.87 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -0.08 Total: 9.16 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.28 Total: -62.24 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.22 Total: -22.51 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.75 Total: 16.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.71 -7.08 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755096193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.348 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds