Wall clock time and date at job start Fri Apr 10 2020 18:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46759 * 124.34829 * 2 1 4 4 C 1.54480 * 105.53184 * 163.21428 * 3 2 1 5 5 H 1.09002 * 110.96811 * 143.33025 * 4 3 2 6 6 C 1.50700 * 110.97311 * 267.09142 * 4 3 2 7 7 O 1.21285 * 119.99862 * 355.96714 * 6 4 3 8 8 N 1.34767 * 120.00221 * 175.97040 * 6 4 3 9 9 C 1.46507 * 119.99910 * 184.19068 * 8 6 4 10 10 C 1.52995 * 109.54526 * 300.29510 * 9 8 6 11 11 N 1.46500 * 109.47429 * 305.37276 * 10 9 8 12 12 C 1.36934 * 120.00264 * 185.08232 * 11 10 9 13 13 H 1.07998 * 119.99942 * 4.93168 * 12 11 10 14 14 C 1.38807 * 120.00246 * 184.92529 * 12 11 10 15 15 N 1.31619 * 120.00180 * 184.03657 * 14 12 11 16 16 Si 1.86799 * 119.99755 * 4.03317 * 14 12 11 17 17 H 1.48505 * 109.47192 * 92.65242 * 16 14 12 18 18 H 1.48501 * 109.47039 * 212.64657 * 16 14 12 19 19 H 1.48494 * 109.47524 * 332.64862 * 16 14 12 20 20 C 1.53183 * 109.54110 * 180.02562 * 9 8 6 21 21 C 1.53090 * 109.16547 * 297.11306 * 20 9 8 22 22 O 1.42901 * 109.41581 * 302.39393 * 21 20 9 23 23 C 1.42895 * 114.09833 * 61.15778 * 22 21 20 24 24 C 1.53096 * 109.41566 * 298.84149 * 23 22 21 25 25 C 1.54627 * 101.76601 * 25.21228 * 4 3 2 26 26 C 1.34425 * 124.34916 * 179.83111 * 2 1 3 27 27 O 1.21274 * 124.94061 * 0.42956 * 26 2 1 28 28 H 1.08996 * 109.47079 * 185.20606 * 1 2 3 29 29 H 1.08994 * 109.46671 * 305.20677 * 1 2 3 30 30 H 1.09003 * 109.46941 * 65.20733 * 1 2 3 31 31 H 1.09003 * 110.38898 * 44.10707 * 3 2 1 32 32 H 1.09000 * 110.04419 * 282.14218 * 3 2 1 33 33 H 0.97005 * 120.00495 * 4.18595 * 8 6 4 34 34 H 1.09009 * 109.46963 * 65.37066 * 10 9 8 35 35 H 1.08993 * 109.47315 * 185.36580 * 10 9 8 36 36 H 0.97003 * 119.99930 * 5.09237 * 11 10 9 37 37 H 0.96998 * 120.00141 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.51973 * 57.02351 * 20 9 8 39 39 H 1.09006 * 109.51994 * 177.20644 * 20 9 8 40 40 H 1.08996 * 109.47990 * 182.40784 * 21 20 9 41 41 H 1.09005 * 109.47795 * 62.37586 * 21 20 9 42 42 H 1.09006 * 109.48147 * 178.85885 * 23 22 21 43 43 H 1.09004 * 109.49288 * 58.82934 * 23 22 21 44 44 H 1.08996 * 109.52060 * 297.70073 * 24 23 22 45 45 H 1.09002 * 109.56950 * 177.54725 * 24 23 22 46 46 H 1.09000 * 110.48314 * 216.52496 * 25 4 3 47 47 H 1.08997 * 110.48483 * 93.87864 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7030 0.7492 0.4298 5 1 4.4749 1.3009 -0.1067 6 6 3.8839 0.8838 1.9199 7 8 3.0061 1.3786 2.5950 8 7 5.0209 0.4546 2.5022 9 6 5.1601 0.5008 3.9599 10 6 5.0151 1.9454 4.4424 11 7 5.9723 2.7963 3.7310 12 6 6.0995 4.1166 4.0713 13 1 5.5536 4.5117 4.9152 14 6 6.9303 4.9470 3.3317 15 7 7.1147 6.1954 3.7055 16 14 7.7868 4.2926 1.8061 17 1 6.9508 4.5719 0.6109 18 1 9.1053 4.9587 1.6545 19 1 7.9850 2.8270 1.9399 20 6 6.5362 -0.0397 4.3606 21 6 6.6407 -1.5085 3.9419 22 8 5.5849 -2.2529 4.5528 23 6 4.2749 -1.8228 4.1777 24 6 4.0753 -0.3665 4.6059 25 6 3.6898 -0.7378 0.0061 26 6 2.2235 -1.1098 0.0033 27 8 1.7946 -2.2442 -0.0008 28 1 -0.3633 -1.0234 0.0932 29 1 -0.3632 0.5925 0.8397 30 1 -0.3633 0.4310 -0.9330 31 1 1.9016 1.9392 0.7111 32 1 2.3260 1.6417 -1.0011 33 1 5.7473 0.1150 1.9562 34 1 4.0016 2.2946 4.2445 35 1 5.2130 1.9924 5.5131 36 1 6.5158 2.4245 3.0187 37 1 7.6949 6.7759 3.1885 38 1 7.3140 0.5378 3.8609 39 1 6.6587 0.0408 5.4408 40 1 7.6018 -1.9104 4.2627 41 1 6.5586 -1.5841 2.8576 42 1 3.5315 -2.4511 4.6684 43 1 4.1616 -1.9025 3.0965 44 1 4.1480 -0.2927 5.6909 45 1 3.0930 -0.0222 4.2824 46 1 4.2360 -1.3450 0.7281 47 1 4.1149 -0.8542 -0.9908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755096193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:56 Heat of formation + Delta-G solvation = -117.809856 kcal Electronic energy + Delta-G solvation = -30275.149958 eV Core-core repulsion = 26264.502267 eV Total energy + Delta-G solvation = -4010.647691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.23613 -41.14753 -39.47334 -37.60807 -37.03873 -35.53780 -34.27438 -33.17670 -32.33326 -32.10598 -28.73575 -28.52339 -27.75418 -25.24391 -24.87538 -24.26563 -22.96366 -21.52868 -20.65346 -20.43899 -19.73459 -18.86382 -17.77106 -17.28392 -17.02036 -16.94836 -16.73271 -16.48055 -16.39924 -16.07012 -15.56880 -15.30273 -15.16104 -14.88384 -14.66970 -14.59021 -14.43519 -13.96377 -13.87123 -13.61100 -13.36807 -13.25474 -13.18940 -13.06538 -12.90984 -12.79501 -12.76980 -12.48261 -12.32292 -12.07674 -11.84286 -11.72021 -11.39635 -11.05799 -10.98195 -10.69412 -10.49992 -9.98131 -9.76118 -9.23195 -8.00206 -5.34081 1.33579 1.43790 1.47881 1.51548 1.64201 2.01379 2.12936 2.50828 2.93258 3.22892 3.29731 3.31094 3.44601 3.57533 3.74163 3.79564 3.88040 3.94526 4.07007 4.23520 4.31693 4.34734 4.39488 4.45425 4.59820 4.63577 4.68911 4.70469 4.74122 4.79656 4.80732 4.82342 4.83570 4.84623 5.04490 5.08465 5.13966 5.18186 5.45275 5.57560 5.77205 6.05169 6.21652 6.22797 6.56785 7.06673 7.10113 7.29342 7.82645 8.09060 9.21932 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.005281 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.407665 B = 5300.526964 C = 6752.713936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.619 5.619 3 C 0.114 3.886 4 C -0.122 4.122 5 H 0.159 0.841 6 C 0.518 3.482 7 O -0.557 6.557 8 N -0.710 5.710 9 C 0.181 3.819 10 C 0.149 3.851 11 N -0.740 5.740 12 C -0.234 4.234 13 H 0.041 0.959 14 C -0.068 4.068 15 N -0.988 5.988 16 Si 0.963 3.037 17 H -0.275 1.275 18 H -0.299 1.299 19 H -0.238 1.238 20 C -0.151 4.151 21 C 0.062 3.938 22 O -0.393 6.393 23 C 0.074 3.926 24 C -0.155 4.155 25 C -0.132 4.132 26 C 0.504 3.496 27 O -0.581 6.581 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.412 0.588 34 H 0.026 0.974 35 H 0.020 0.980 36 H 0.369 0.631 37 H 0.257 0.743 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.111 0.889 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 -18.221 -10.789 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.351 5.351 3 C -0.009 4.009 4 C -0.144 4.144 5 H 0.176 0.824 6 C 0.305 3.695 7 O -0.434 6.434 8 N -0.364 5.364 9 C 0.095 3.905 10 C 0.022 3.978 11 N -0.387 5.387 12 C -0.366 4.366 13 H 0.059 0.941 14 C -0.259 4.259 15 N -0.638 5.638 16 Si 0.789 3.211 17 H -0.201 1.201 18 H -0.226 1.226 19 H -0.162 1.162 20 C -0.189 4.189 21 C -0.014 4.014 22 O -0.312 6.312 23 C -0.003 4.003 24 C -0.194 4.194 25 C -0.172 4.172 26 C 0.293 3.707 27 O -0.462 6.462 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.249 0.751 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.204 0.796 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.129 0.871 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.695 -18.422 -10.043 21.741 hybrid contribution 0.494 0.886 -0.526 1.142 sum -5.201 -17.536 -10.569 21.125 Atomic orbital electron populations 1.21658 0.77394 1.03119 1.02997 1.48286 1.07398 1.07503 1.71947 1.22144 0.88147 0.86965 1.03634 1.22431 1.00867 0.98828 0.92251 0.82381 1.20726 0.81688 0.76470 0.90634 1.90677 1.43352 1.43750 1.65652 1.45910 1.18034 1.65448 1.06972 1.20405 0.96289 0.93640 0.80211 1.21062 0.92938 0.89465 0.94337 1.42383 1.46415 1.06657 1.43205 1.18944 1.21703 0.86129 1.09778 0.94101 1.25635 1.01512 0.95668 1.03070 1.69927 1.43447 1.07655 1.42819 0.85299 0.77128 0.79253 0.79419 1.20055 1.22639 1.16189 1.22425 0.95211 0.97792 1.03510 1.22754 0.91452 0.89277 0.97940 1.87921 1.14647 1.57871 1.70729 1.22455 0.84861 0.93454 0.99481 1.22424 0.99567 0.96050 1.01399 1.22404 0.93271 0.94049 1.07439 1.21414 0.90782 0.83982 0.74510 1.90694 1.79618 1.22655 1.53192 0.91224 0.91566 0.89821 0.90181 0.86932 0.75087 0.95559 0.96238 0.79579 0.93404 0.89773 0.90067 0.86668 0.91270 0.88343 0.92984 0.90465 0.90855 0.87100 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 11.14 127.77 1.42 3.03 16 2 N -0.62 -12.71 3.33 -842.91 -2.81 -15.52 16 3 C 0.11 2.01 6.71 86.83 0.58 2.60 16 4 C -0.12 -2.01 3.55 -10.48 -0.04 -2.05 16 5 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 6 C 0.52 13.21 6.53 87.66 0.57 13.78 16 7 O -0.56 -19.18 11.82 -3.05 -0.04 -19.22 16 8 N -0.71 -16.27 3.36 -422.38 -1.42 -17.69 16 9 C 0.18 5.00 0.32 3.72 0.00 5.01 16 10 C 0.15 5.86 4.86 86.38 0.42 6.28 16 11 N -0.74 -33.05 4.95 -343.47 -1.70 -34.75 16 12 C -0.23 -13.38 10.47 84.03 0.88 -12.50 16 13 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 14 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 15 N -0.99 -63.00 13.97 21.65 0.30 -62.69 16 16 Si 0.96 42.19 27.95 68.60 1.92 44.11 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 19 H -0.24 -8.58 6.23 99.48 0.62 -7.96 16 20 C -0.15 -3.56 4.81 30.69 0.15 -3.41 16 21 C 0.06 1.12 6.67 72.01 0.48 1.60 16 22 O -0.39 -8.88 10.77 -148.98 -1.60 -10.49 16 23 C 0.07 1.66 6.68 72.01 0.48 2.14 16 24 C -0.16 -4.12 4.77 30.68 0.15 -3.98 16 25 C -0.13 -1.85 6.39 30.59 0.20 -1.66 16 26 C 0.50 11.61 8.02 87.90 0.71 12.32 16 27 O -0.58 -18.08 17.36 -3.01 -0.05 -18.14 16 28 H 0.07 1.40 7.55 -2.39 -0.02 1.38 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.84 6.97 -2.39 -0.02 1.82 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 6.61 7.52 -92.70 -0.70 5.92 16 34 H 0.03 1.19 6.20 -2.38 -0.01 1.18 16 35 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.37 14.78 4.42 -92.71 -0.41 14.37 16 37 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.08 2.03 7.44 -2.39 -0.02 2.01 16 39 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 0.94 7.09 -2.38 -0.02 0.93 16 42 H 0.10 2.04 8.14 -2.38 -0.02 2.03 16 43 H 0.05 1.11 7.75 -2.38 -0.02 1.09 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.07 2.26 6.29 -2.39 -0.02 2.24 16 46 H 0.11 1.47 7.73 -2.39 -0.02 1.45 16 47 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -82.53 367.10 0.87 -81.67 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -0.20 Total: 33.02 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 6.46 Total: 19.71 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -5.63 Total: -130.66 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -1.69 Total: -47.84 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.92 Total: 44.11 kcal Total: -82.53 0.87 -81.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755096193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.144 kcal (2) G-P(sol) polarization free energy of solvation -82.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds