Wall clock time and date at job start Fri Apr 10 2020 18:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00188 * 2 1 4 4 O 1.21285 * 120.00146 * 185.04256 * 3 2 1 5 5 C 1.50701 * 119.99713 * 5.03518 * 3 2 1 6 6 H 1.08996 * 110.33158 * 43.68292 * 5 3 2 7 7 C 1.54483 * 110.37318 * 281.42912 * 5 3 2 8 8 C 1.54508 * 104.05925 * 217.19058 * 7 5 3 9 9 C 1.54478 * 104.06721 * 0.02562 * 8 7 5 10 10 O 1.44428 * 110.37031 * 165.92952 * 5 3 2 11 11 C 1.46504 * 119.99879 * 180.02562 * 2 1 3 12 12 C 1.53776 * 113.61160 * 305.91455 * 11 2 1 13 13 C 1.53785 * 87.08061 * 139.98491 * 12 11 2 14 14 N 1.46895 * 113.61704 * 219.93594 * 13 12 11 15 15 C 1.46891 * 111.00277 * 203.46944 * 14 13 12 16 16 C 1.50703 * 109.47249 * 179.97438 * 15 14 13 17 17 O 1.21288 * 119.99999 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99842 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99656 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00256 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99758 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00291 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99772 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47219 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47071 * 119.99763 * 23 21 19 26 26 H 1.48509 * 109.46767 * 239.99693 * 23 21 19 27 27 C 1.53775 * 113.61703 * 43.41325 * 11 2 1 28 28 H 1.09003 * 109.47104 * 274.61600 * 1 2 3 29 29 H 1.09004 * 109.47545 * 34.62126 * 1 2 3 30 30 H 1.09002 * 109.47400 * 154.61932 * 1 2 3 31 31 H 1.08991 * 110.51040 * 335.83670 * 7 5 3 32 32 H 1.08997 * 110.50468 * 98.54785 * 7 5 3 33 33 H 1.09003 * 110.50853 * 118.65128 * 8 7 5 34 34 H 1.09008 * 110.50875 * 241.35337 * 8 7 5 35 35 H 1.08996 * 110.37446 * 142.80770 * 9 8 7 36 36 H 1.09002 * 110.37164 * 265.03863 * 9 8 7 37 37 H 1.09003 * 112.90629 * 174.66807 * 11 2 1 38 38 H 1.08999 * 113.61683 * 25.43554 * 12 11 2 39 39 H 1.09001 * 113.61870 * 254.53016 * 12 11 2 40 40 H 1.09001 * 113.61417 * 89.11699 * 13 12 11 41 41 H 1.00899 * 110.99913 * 327.42290 * 14 13 12 42 42 H 1.09000 * 109.47089 * 299.99863 * 15 14 13 43 43 H 1.08997 * 109.47467 * 60.00074 * 15 14 13 44 44 H 0.96996 * 120.00238 * 0.02562 * 18 16 15 45 45 H 0.96995 * 120.00183 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.61389 * 105.46959 * 27 11 2 47 47 H 1.08998 * 113.61856 * 334.57223 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3482 1.1692 -0.0923 5 6 1.3897 2.4698 0.1145 6 1 0.6162 2.3958 0.8789 7 6 0.7664 2.8531 -1.2460 8 6 0.9146 4.3899 -1.3070 9 6 1.6105 4.7531 0.0235 10 8 2.3000 3.5478 0.4230 11 6 2.1974 -1.2688 -0.0006 12 6 1.7896 -2.2159 1.1402 13 6 1.8959 -3.3624 0.1207 14 7 0.8346 -4.3691 0.2543 15 6 1.2577 -5.6582 -0.3086 16 6 0.1459 -6.6635 -0.1530 17 8 -0.8963 -6.3382 0.3753 18 7 0.3096 -7.9242 -0.6010 19 6 -0.7017 -8.8388 -0.4590 20 1 -1.6293 -8.5494 0.0121 21 6 -0.5326 -10.1386 -0.9204 22 7 0.5963 -10.4909 -1.4932 23 14 -1.9109 -11.3847 -0.7275 24 1 -3.0688 -10.7421 -0.0557 25 1 -2.3249 -11.8760 -2.0663 26 1 -1.4342 -12.5269 0.0933 27 6 1.6191 -2.3136 -0.9693 28 1 -0.3633 0.0827 1.0244 29 1 -0.3634 0.8457 -0.5839 30 1 -0.3634 -0.9285 -0.4405 31 1 1.3144 2.3838 -2.0629 32 1 -0.2855 2.5693 -1.2776 33 1 1.5359 4.6803 -2.1543 34 1 -0.0641 4.8658 -1.3690 35 1 2.3214 5.5651 -0.1294 36 1 0.8714 5.0331 0.7741 37 1 3.2754 -1.1363 -0.0938 38 1 0.7763 -2.0489 1.5053 39 1 2.5251 -2.2755 1.9424 40 1 2.8914 -3.8023 0.0606 41 1 0.5517 -4.4705 1.2175 42 1 1.4904 -5.5340 -1.3662 43 1 2.1433 -6.0120 0.2191 44 1 1.1432 -8.1844 -1.0232 45 1 0.7142 -11.3981 -1.8156 46 1 2.2169 -2.4518 -1.8702 47 1 0.5591 -2.1732 -1.1811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755849570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:13 Heat of formation + Delta-G solvation = -82.763443 kcal Electronic energy + Delta-G solvation = -27246.128004 eV Core-core repulsion = 23237.000040 eV Total energy + Delta-G solvation = -4009.127964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94274 -39.62641 -38.37285 -37.83753 -35.32505 -34.03101 -33.09723 -32.43417 -31.20898 -30.02939 -27.49114 -26.82752 -25.77989 -24.93700 -23.98947 -22.51210 -21.93849 -19.97743 -19.45576 -19.00923 -17.88679 -17.84221 -17.05486 -16.73209 -16.07403 -15.75569 -15.44916 -15.25783 -15.18335 -15.05996 -14.43269 -14.22521 -14.09229 -13.81032 -13.47096 -13.40687 -13.30507 -12.78141 -12.57510 -12.36037 -12.20703 -12.05919 -11.91856 -11.80941 -11.71046 -11.55761 -11.24676 -11.22202 -11.04059 -10.87468 -10.59378 -10.41169 -10.35396 -10.23308 -9.81874 -9.53199 -8.85043 -8.46844 -8.10245 -7.97136 -6.42791 -3.83697 2.23311 2.50359 3.15420 3.26031 3.33155 3.57575 3.89861 3.94824 4.10758 4.13028 4.34223 4.35852 4.44075 4.49443 4.54058 4.64237 4.69298 4.78280 4.86585 4.88978 5.04383 5.17187 5.19284 5.21071 5.25053 5.30146 5.39460 5.43565 5.45528 5.51673 5.62828 5.71898 5.78680 5.81532 5.92913 5.98402 6.07690 6.20863 6.27910 6.43549 7.09575 7.25111 7.54307 7.63397 7.89371 8.05454 8.60057 9.16807 9.53386 10.04539 10.74982 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038320 B = 0.001796 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.514420 B =15585.441313 C =15875.522654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.599 5.599 3 C 0.520 3.480 4 O -0.522 6.522 5 C 0.058 3.942 6 H 0.093 0.907 7 C -0.144 4.144 8 C -0.153 4.153 9 C 0.041 3.959 10 O -0.347 6.347 11 C 0.120 3.880 12 C -0.151 4.151 13 C 0.063 3.937 14 N -0.654 5.654 15 C 0.049 3.951 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.137 4.137 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.351 0.649 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.070 0.930 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 26.923 0.914 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.333 5.333 3 C 0.307 3.693 4 O -0.396 6.396 5 C -0.003 4.003 6 H 0.111 0.889 7 C -0.182 4.182 8 C -0.191 4.191 9 C -0.036 4.036 10 O -0.265 6.265 11 C 0.017 3.983 12 C -0.190 4.190 13 C -0.049 4.049 14 N -0.287 5.287 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.469 6.469 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.176 4.176 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.171 0.829 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.705 27.136 0.678 27.198 hybrid contribution 0.209 -1.221 0.337 1.284 sum 1.914 25.915 1.015 26.005 Atomic orbital electron populations 1.22020 0.79219 1.04386 1.02305 1.47693 1.07061 1.05283 1.73257 1.20226 0.87890 0.84697 0.76512 1.90714 1.14001 1.86940 1.47986 1.22897 0.91834 0.87688 0.97885 0.88935 1.22940 1.01984 0.96604 0.96700 1.22948 1.01918 0.95135 0.99088 1.23511 0.96657 0.88615 0.94772 1.89288 1.38943 1.14180 1.84050 1.22528 0.97863 0.80562 0.97364 1.23684 1.02967 0.95206 0.97184 1.22775 0.94275 0.91181 0.96620 1.60198 1.36262 1.06719 1.25482 1.21739 0.96162 0.89541 1.00901 1.19825 0.89287 0.83337 0.84925 1.90515 1.29195 1.79001 1.48169 1.41881 1.17077 1.08433 1.52666 1.19754 0.96629 0.89895 1.36607 0.87863 1.25271 0.97785 0.98143 0.96793 1.69619 1.24633 1.20122 1.39896 0.85799 0.80670 0.79906 0.77953 1.19225 1.20740 1.20775 1.23573 1.02628 0.93967 0.97427 0.92175 0.91094 0.89140 0.89990 0.89274 0.90215 0.89958 0.88558 0.91872 0.86211 0.88715 0.90994 0.90742 0.82868 0.89592 0.93783 0.77451 0.91914 0.91132 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 8.85 59.84 0.53 0.97 16 2 N -0.60 -5.89 3.09 -173.00 -0.53 -6.43 16 3 C 0.52 6.14 6.88 -10.98 -0.08 6.07 16 4 O -0.52 -8.41 16.07 -13.20 -0.21 -8.62 16 5 C 0.06 0.52 2.81 -27.10 -0.08 0.44 16 6 H 0.09 0.62 7.69 -51.93 -0.40 0.22 16 7 C -0.14 -0.91 5.76 -25.16 -0.15 -1.05 16 8 C -0.15 -0.79 7.09 -25.16 -0.18 -0.97 16 9 C 0.04 0.27 7.63 37.93 0.29 0.56 16 10 O -0.35 -3.83 10.96 -53.99 -0.59 -4.42 16 11 C 0.12 1.28 4.24 -67.12 -0.28 1.00 16 12 C -0.15 -1.56 7.26 -25.92 -0.19 -1.75 16 13 C 0.06 0.74 4.12 -66.90 -0.28 0.46 16 14 N -0.65 -10.02 6.18 -107.14 -0.66 -10.68 16 15 C 0.05 0.85 6.02 -4.98 -0.03 0.82 16 16 C 0.44 10.27 7.82 -10.98 -0.09 10.19 16 17 O -0.58 -15.63 15.78 5.55 0.09 -15.54 16 18 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 23 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C -0.14 -1.49 7.38 -25.92 -0.19 -1.68 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.35 5.11 -51.93 -0.27 0.08 16 30 H 0.09 0.68 5.77 -51.93 -0.30 0.38 16 31 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 32 H 0.09 0.35 6.82 -51.93 -0.35 0.00 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.27 8.14 -51.92 -0.42 -0.16 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.12 1.43 7.18 -51.93 -0.37 1.06 16 38 H 0.09 0.97 7.47 -51.93 -0.39 0.58 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 41 H 0.35 5.57 8.26 -39.29 -0.32 5.24 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 44 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.10 5.97 -51.93 -0.31 0.79 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -34.67 378.98 -8.68 -43.35 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.17 Total: 11.67 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.95 Total: 7.07 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.53 Total: -55.13 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.72 Total: -28.58 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.67 -8.68 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755849570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.418 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds