Wall clock time and date at job start Fri Apr 10 2020 18:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00188 * 2 1 4 4 O 1.21285 * 120.00146 * 185.04256 * 3 2 1 5 5 C 1.50701 * 119.99713 * 5.03518 * 3 2 1 6 6 H 1.08996 * 110.33158 * 43.68292 * 5 3 2 7 7 C 1.54483 * 110.37318 * 281.42912 * 5 3 2 8 8 C 1.54508 * 104.05925 * 217.19058 * 7 5 3 9 9 C 1.54478 * 104.06721 * 0.02562 * 8 7 5 10 10 O 1.44428 * 110.37031 * 165.92952 * 5 3 2 11 11 C 1.46504 * 119.99879 * 180.02562 * 2 1 3 12 12 C 1.53776 * 113.61160 * 305.91455 * 11 2 1 13 13 C 1.53785 * 87.08061 * 139.98491 * 12 11 2 14 14 N 1.46895 * 113.61704 * 219.93594 * 13 12 11 15 15 C 1.46891 * 111.00277 * 203.46944 * 14 13 12 16 16 C 1.50703 * 109.47249 * 179.97438 * 15 14 13 17 17 O 1.21288 * 119.99999 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99842 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99656 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00256 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99758 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00291 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99772 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47219 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47071 * 119.99763 * 23 21 19 26 26 H 1.48509 * 109.46767 * 239.99693 * 23 21 19 27 27 C 1.53775 * 113.61703 * 43.41325 * 11 2 1 28 28 H 1.09003 * 109.47104 * 274.61600 * 1 2 3 29 29 H 1.09004 * 109.47545 * 34.62126 * 1 2 3 30 30 H 1.09002 * 109.47400 * 154.61932 * 1 2 3 31 31 H 1.08991 * 110.51040 * 335.83670 * 7 5 3 32 32 H 1.08997 * 110.50468 * 98.54785 * 7 5 3 33 33 H 1.09003 * 110.50853 * 118.65128 * 8 7 5 34 34 H 1.09008 * 110.50875 * 241.35337 * 8 7 5 35 35 H 1.08996 * 110.37446 * 142.80770 * 9 8 7 36 36 H 1.09002 * 110.37164 * 265.03863 * 9 8 7 37 37 H 1.09003 * 112.90629 * 174.66807 * 11 2 1 38 38 H 1.08999 * 113.61683 * 25.43554 * 12 11 2 39 39 H 1.09001 * 113.61870 * 254.53016 * 12 11 2 40 40 H 1.09001 * 113.61417 * 89.11699 * 13 12 11 41 41 H 1.00899 * 110.99913 * 327.42290 * 14 13 12 42 42 H 1.09000 * 109.47089 * 299.99863 * 15 14 13 43 43 H 1.08997 * 109.47467 * 60.00074 * 15 14 13 44 44 H 0.96996 * 120.00238 * 0.02562 * 18 16 15 45 45 H 0.96995 * 120.00183 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.61389 * 105.46959 * 27 11 2 47 47 H 1.08998 * 113.61856 * 334.57223 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3482 1.1692 -0.0923 5 6 1.3897 2.4698 0.1145 6 1 0.6162 2.3958 0.8789 7 6 0.7664 2.8531 -1.2460 8 6 0.9146 4.3899 -1.3070 9 6 1.6105 4.7531 0.0235 10 8 2.3000 3.5478 0.4230 11 6 2.1974 -1.2688 -0.0006 12 6 1.7896 -2.2159 1.1402 13 6 1.8959 -3.3624 0.1207 14 7 0.8346 -4.3691 0.2543 15 6 1.2577 -5.6582 -0.3086 16 6 0.1459 -6.6635 -0.1530 17 8 -0.8963 -6.3382 0.3753 18 7 0.3096 -7.9242 -0.6010 19 6 -0.7017 -8.8388 -0.4590 20 1 -1.6293 -8.5494 0.0121 21 6 -0.5326 -10.1386 -0.9204 22 7 0.5963 -10.4909 -1.4932 23 14 -1.9109 -11.3847 -0.7275 24 1 -3.0688 -10.7421 -0.0557 25 1 -2.3249 -11.8760 -2.0663 26 1 -1.4342 -12.5269 0.0933 27 6 1.6191 -2.3136 -0.9693 28 1 -0.3633 0.0827 1.0244 29 1 -0.3634 0.8457 -0.5839 30 1 -0.3634 -0.9285 -0.4405 31 1 1.3144 2.3838 -2.0629 32 1 -0.2855 2.5693 -1.2776 33 1 1.5359 4.6803 -2.1543 34 1 -0.0641 4.8658 -1.3690 35 1 2.3214 5.5651 -0.1294 36 1 0.8714 5.0331 0.7741 37 1 3.2754 -1.1363 -0.0938 38 1 0.7763 -2.0489 1.5053 39 1 2.5251 -2.2755 1.9424 40 1 2.8914 -3.8023 0.0606 41 1 0.5517 -4.4705 1.2175 42 1 1.4904 -5.5340 -1.3662 43 1 2.1433 -6.0120 0.2191 44 1 1.1432 -8.1844 -1.0232 45 1 0.7142 -11.3981 -1.8156 46 1 2.2169 -2.4518 -1.8702 47 1 0.5591 -2.1732 -1.1811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755849570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:12 Heat of formation + Delta-G solvation = -108.710808 kcal Electronic energy + Delta-G solvation = -27247.253166 eV Core-core repulsion = 23237.000040 eV Total energy + Delta-G solvation = -4010.253126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74071 -40.49711 -39.94244 -38.91288 -36.39348 -35.88231 -34.29523 -33.23513 -33.01869 -30.64572 -28.57369 -27.93910 -26.73064 -26.19881 -25.19228 -23.37740 -22.43181 -21.17420 -20.77880 -20.08928 -19.82812 -18.61643 -17.99393 -17.56329 -17.28847 -16.85908 -16.58918 -16.29446 -16.20778 -16.07877 -15.87985 -15.66001 -15.12615 -14.74995 -14.67988 -14.25985 -14.23695 -14.13566 -13.53295 -13.49977 -13.24930 -13.16575 -12.88216 -12.84883 -12.73051 -12.59257 -12.40620 -12.30343 -12.15215 -12.10913 -11.82716 -11.69159 -11.51490 -11.48545 -11.05595 -10.64233 -10.32273 -10.01097 -9.67174 -9.34071 -8.46363 -5.95136 1.37210 1.39351 1.42566 1.56748 1.74680 2.05819 2.29670 2.93388 3.03444 3.21151 3.32870 3.46269 3.56954 3.64006 3.66315 3.86344 3.89064 3.97794 4.05657 4.16350 4.21671 4.30954 4.36940 4.46513 4.54379 4.57011 4.60496 4.69349 4.75620 4.78943 4.81024 4.89213 4.96013 4.99274 4.99577 5.08531 5.11670 5.18422 5.41744 5.52387 5.75334 5.92501 6.13399 6.32475 6.40704 6.60351 7.04766 7.13010 7.56901 8.11663 8.71231 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038320 B = 0.001796 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.514420 B =15585.441313 C =15875.522654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.594 5.594 3 C 0.512 3.488 4 O -0.577 6.577 5 C 0.058 3.942 6 H 0.119 0.881 7 C -0.141 4.141 8 C -0.148 4.148 9 C 0.033 3.967 10 O -0.389 6.389 11 C 0.121 3.879 12 C -0.139 4.139 13 C 0.061 3.939 14 N -0.662 5.662 15 C 0.064 3.936 16 C 0.439 3.561 17 O -0.622 6.622 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.272 1.272 27 C -0.130 4.130 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.347 0.653 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.071 0.929 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 27.753 0.774 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.326 5.326 3 C 0.301 3.699 4 O -0.457 6.457 5 C -0.003 4.003 6 H 0.136 0.864 7 C -0.179 4.179 8 C -0.186 4.186 9 C -0.043 4.043 10 O -0.308 6.308 11 C 0.017 3.983 12 C -0.178 4.178 13 C -0.050 4.050 14 N -0.295 5.295 15 C -0.069 4.069 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.169 4.169 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.167 0.833 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.485 27.974 0.524 27.983 hybrid contribution 0.594 -1.417 0.393 1.586 sum 1.079 26.557 0.918 26.595 Atomic orbital electron populations 1.22258 0.77126 1.05275 1.03739 1.47769 1.08280 1.04511 1.72059 1.20905 0.87495 0.86098 0.75438 1.90679 1.16409 1.87778 1.50787 1.23063 0.91481 0.85693 1.00065 0.86393 1.22984 1.03154 0.97296 0.94492 1.22963 1.03129 0.94362 0.98118 1.23762 0.97166 0.87312 0.96018 1.89248 1.40900 1.16000 1.84647 1.22356 0.97242 0.81170 0.97548 1.23601 1.03340 0.93983 0.96902 1.22865 0.93683 0.90613 0.97793 1.60201 1.37851 1.06195 1.25209 1.21598 0.94121 0.88804 1.02361 1.20868 0.90122 0.83482 0.82882 1.90483 1.31283 1.79669 1.49376 1.41958 1.16800 1.09020 1.53394 1.19717 0.96890 0.91365 1.38279 0.90196 1.26055 1.00092 0.99305 0.95936 1.69679 1.25814 1.20848 1.39871 0.84860 0.77641 0.77487 0.78277 1.19682 1.19670 1.19681 1.23519 1.02645 0.93473 0.97278 0.90702 0.88695 0.89526 0.91740 0.86261 0.90671 0.87213 0.88214 0.89913 0.87828 0.88267 0.90487 0.89882 0.83330 0.88036 0.91645 0.77024 0.91340 0.91000 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 8.85 127.77 1.13 1.79 16 2 N -0.59 -11.09 3.09 -819.65 -2.53 -13.62 16 3 C 0.51 12.01 6.88 87.66 0.60 12.61 16 4 O -0.58 -19.37 16.07 14.89 0.24 -19.13 16 5 C 0.06 0.94 2.81 30.35 0.09 1.03 16 6 H 0.12 1.27 7.69 -2.39 -0.02 1.25 16 7 C -0.14 -1.48 5.76 31.61 0.18 -1.30 16 8 C -0.15 -1.19 7.09 31.61 0.22 -0.97 16 9 C 0.03 0.38 7.63 72.48 0.55 0.93 16 10 O -0.39 -8.45 10.96 -131.05 -1.44 -9.89 16 11 C 0.12 2.50 4.24 45.51 0.19 2.69 16 12 C -0.14 -2.70 7.26 31.12 0.23 -2.47 16 13 C 0.06 1.35 4.12 45.44 0.19 1.54 16 14 N -0.66 -19.47 6.18 -492.88 -3.05 -22.51 16 15 C 0.06 2.12 6.02 85.56 0.52 2.63 16 16 C 0.44 20.50 7.82 87.66 0.69 21.18 16 17 O -0.62 -33.67 15.78 -3.06 -0.05 -33.72 16 18 N -0.57 -29.25 5.29 -306.98 -1.62 -30.87 16 19 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -49.60 13.05 21.66 0.28 -49.31 16 23 Si 0.99 42.66 29.55 68.60 2.03 44.68 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 C -0.13 -2.68 7.38 31.12 0.23 -2.45 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.63 5.11 -2.38 -0.01 0.61 16 30 H 0.09 1.11 5.77 -2.39 -0.01 1.10 16 31 H 0.06 0.91 7.86 -2.39 -0.02 0.89 16 32 H 0.12 0.49 6.82 -2.39 -0.02 0.47 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 2.53 7.18 -2.39 -0.02 2.51 16 38 H 0.10 1.86 7.47 -2.39 -0.02 1.84 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 1.74 7.88 -2.39 -0.02 1.72 16 41 H 0.35 10.69 8.26 -89.69 -0.74 9.95 16 42 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 44 H 0.40 19.21 7.90 -92.71 -0.73 18.47 16 45 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.10 2.06 5.97 -2.39 -0.01 2.04 16 Total: -1.00 -77.10 378.98 -0.50 -77.61 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -0.47 Total: 37.84 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.10 Total: 18.94 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -6.92 Total: -116.33 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -1.24 Total: -62.74 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -77.10 -0.50 -77.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755849570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.103 kcal (2) G-P(sol) polarization free energy of solvation -77.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds