Wall clock time and date at job start Fri Apr 10 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34238 * 116.99709 * 2 1 4 4 O 1.20830 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99829 * 179.97438 * 3 2 1 6 6 H 1.09001 * 112.85230 * 48.80680 * 5 3 2 7 7 C 1.53781 * 113.61430 * 180.02562 * 5 3 2 8 8 C 1.53780 * 87.08238 * 140.06723 * 7 5 3 9 9 H 1.09005 * 113.60709 * 219.93671 * 8 7 5 10 10 N 1.46496 * 113.61283 * 89.11983 * 8 7 5 11 11 C 1.34779 * 119.99641 * 155.27986 * 10 8 7 12 12 O 1.21586 * 120.00010 * 359.71668 * 11 10 8 13 13 N 1.34775 * 119.99760 * 179.72435 * 11 10 8 14 14 C 1.46502 * 120.00047 * 179.97438 * 13 11 10 15 15 C 1.53044 * 109.45570 * 275.06502 * 14 13 11 16 16 C 1.53194 * 109.31016 * 178.61846 * 15 14 13 17 17 N 1.46925 * 108.78021 * 54.62770 * 16 15 14 18 18 C 1.36931 * 120.62963 * 126.36873 * 17 16 15 19 19 H 1.07994 * 120.00423 * 207.69715 * 18 17 16 20 20 C 1.38821 * 119.99653 * 27.69754 * 18 17 16 21 21 N 1.31617 * 120.00108 * 17.36332 * 20 18 17 22 22 Si 1.86809 * 119.99851 * 197.35811 * 20 18 17 23 23 H 1.48498 * 109.47023 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46652 * 120.00498 * 22 20 18 25 25 H 1.48502 * 109.46945 * 240.00155 * 22 20 18 26 26 C 1.46920 * 118.74137 * 306.39837 * 17 16 15 27 27 C 1.53046 * 109.45984 * 154.99629 * 14 13 11 28 28 C 1.53779 * 87.07926 * 334.56454 * 8 7 5 29 29 H 1.08992 * 109.47257 * 59.99998 * 1 2 3 30 30 H 1.08999 * 109.46593 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46830 * 299.99715 * 1 2 3 32 32 H 1.09005 * 113.61381 * 25.51582 * 7 5 3 33 33 H 1.09001 * 113.61457 * 254.62123 * 7 5 3 34 34 H 0.96995 * 120.00136 * 334.99468 * 10 8 7 35 35 H 0.97005 * 119.99982 * 359.97438 * 13 11 10 36 36 H 1.08994 * 109.45864 * 35.02140 * 14 13 11 37 37 H 1.08999 * 109.49614 * 298.56322 * 15 14 13 38 38 H 1.08994 * 109.49806 * 58.66264 * 15 14 13 39 39 H 1.09010 * 109.58273 * 294.84473 * 16 15 14 40 40 H 1.08992 * 109.58648 * 174.42393 * 16 15 14 41 41 H 0.96994 * 120.00250 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.58807 * 293.81612 * 26 17 16 43 43 H 1.09001 * 109.58846 * 173.39028 * 26 17 16 44 44 H 1.08998 * 109.49695 * 301.33179 * 27 14 13 45 45 H 1.08995 * 109.49666 * 61.40073 * 27 14 13 46 46 H 1.08999 * 113.60981 * 139.98111 * 28 8 7 47 47 H 1.08991 * 113.61958 * 270.88231 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0240 0.6364 -0.7549 7 6 4.1077 2.7144 0.0011 8 6 5.1820 2.2262 0.9872 9 1 5.3988 2.9378 1.7840 10 7 6.3907 1.7180 0.3339 11 6 7.5666 1.7255 0.9925 12 8 7.6252 2.1590 2.1270 13 7 8.6775 1.2528 0.3935 14 6 9.9558 1.2615 1.1091 15 6 10.6235 2.6286 0.9433 16 6 11.9431 2.6455 1.7213 17 7 12.7680 1.5132 1.2782 18 6 14.0508 1.7129 0.8428 19 1 14.4916 1.0310 0.1307 20 6 14.7846 2.7918 1.3167 21 7 14.4043 3.4165 2.4109 22 14 16.3120 3.3567 0.4014 23 1 16.5226 2.4948 -0.7893 24 1 16.1358 4.7658 -0.0328 25 1 17.4912 3.2589 1.2987 26 6 12.1901 0.1629 1.3106 27 6 10.8678 0.1736 0.5372 28 6 4.1925 1.1227 1.3968 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.4176 3.4403 0.4313 33 1 4.5097 3.0300 -0.9616 34 1 6.3439 1.3722 -0.5711 35 1 8.6307 0.9067 -0.5115 36 1 9.7807 1.0691 2.1676 37 1 10.8216 2.8110 -0.1129 38 1 9.9634 3.4051 1.3296 39 1 11.7395 2.5537 2.7882 40 1 12.4700 3.5796 1.5268 41 1 14.9172 4.1701 2.7423 42 1 12.0066 -0.1314 2.3440 43 1 12.8799 -0.5411 0.8451 44 1 10.3815 -0.7970 0.6345 45 1 11.0630 0.3789 -0.5153 46 1 4.6631 0.1533 1.5609 47 1 3.5257 1.4133 2.2085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596274672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:44 Heat of formation + Delta-G solvation = -72.284390 kcal Electronic energy + Delta-G solvation = -27512.934729 eV Core-core repulsion = 23504.261170 eV Total energy + Delta-G solvation = -4008.673558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30836 -40.12054 -38.72065 -37.28531 -36.67852 -34.34880 -33.35337 -31.90295 -29.99204 -29.42320 -28.70181 -26.29760 -26.17305 -24.89677 -22.46286 -22.18832 -21.66859 -20.77944 -19.67609 -19.45702 -18.48167 -17.84128 -17.13973 -16.79578 -16.73572 -16.27323 -15.32422 -15.15536 -14.80054 -14.52642 -14.19922 -14.05758 -13.76727 -13.59500 -13.47641 -13.06640 -12.98992 -12.83616 -12.61780 -12.44415 -12.34490 -12.14142 -11.46512 -11.23871 -11.15117 -11.11176 -11.07999 -10.90648 -10.72752 -10.64362 -10.36138 -10.20763 -10.09448 -9.97682 -9.73980 -9.54004 -9.21242 -8.62751 -8.38547 -6.67287 -5.76956 -3.19478 1.76380 2.30345 2.69386 3.31306 3.38206 3.45953 3.47977 3.89905 4.00536 4.24014 4.42013 4.45265 4.50702 4.62146 4.67571 4.75011 5.08343 5.19109 5.29352 5.31068 5.40175 5.42698 5.47869 5.51055 5.55344 5.67028 5.71432 5.85923 5.96113 6.11205 6.25745 6.37952 6.43912 6.47015 6.61009 6.67468 6.78182 6.90975 6.96432 7.10423 7.32970 7.41553 7.71176 7.81535 8.12462 8.46533 8.74737 9.22606 9.86143 10.42651 11.31556 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038778 B = 0.001942 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.888766 B =14417.442356 C =14653.344950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.506 6.506 5 C -0.113 4.113 6 H 0.124 0.876 7 C -0.126 4.126 8 C 0.146 3.854 9 H 0.114 0.886 10 N -0.735 5.735 11 C 0.704 3.296 12 O -0.585 6.585 13 N -0.739 5.739 14 C 0.169 3.831 15 C -0.147 4.147 16 C 0.173 3.827 17 N -0.593 5.593 18 C -0.253 4.253 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.148 3.852 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.394 0.606 35 H 0.390 0.610 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.021 0.979 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.371 -7.344 -7.460 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.314 3.686 4 O -0.394 6.394 5 C -0.132 4.132 6 H 0.142 0.858 7 C -0.164 4.164 8 C 0.038 3.962 9 H 0.132 0.868 10 N -0.391 5.391 11 C 0.404 3.596 12 O -0.462 6.462 13 N -0.392 5.392 14 C 0.065 3.935 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.021 3.979 27 C -0.178 4.178 28 C -0.173 4.173 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.228 0.772 35 H 0.223 0.777 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -25.407 -6.511 -6.297 26.973 hybrid contribution 0.336 -0.006 -1.417 1.457 sum -25.071 -6.517 -7.715 27.028 Atomic orbital electron populations 1.23286 0.76356 1.03779 1.02576 1.86539 1.23439 1.33578 1.83906 1.23695 0.91806 0.81263 0.71840 1.90670 1.67025 1.36436 1.45224 1.22683 0.87078 1.01289 1.02134 0.85815 1.23391 0.97237 0.94449 1.01309 1.21510 0.82856 0.95703 0.96083 0.86838 1.44821 1.06868 1.69146 1.18217 1.15981 0.80109 0.78899 0.84644 1.90942 1.85154 1.52519 1.17590 1.45534 1.08043 1.67073 1.18524 1.20922 0.79694 0.96530 0.96371 1.22577 0.99355 0.95409 1.01375 1.20773 0.87143 0.93303 0.94128 1.44114 1.11324 1.00049 1.76051 1.19212 0.89346 1.11251 1.18497 0.91603 1.25056 0.97844 1.00839 0.95947 1.70045 1.40653 1.23567 1.20218 0.86244 0.82837 0.78465 0.79331 1.20287 1.21594 1.21740 1.20840 0.91654 0.89004 0.96385 1.22344 0.97845 0.96609 1.01034 1.23447 0.98048 1.01762 0.94069 0.91888 0.88041 0.91841 0.87166 0.89692 0.77214 0.77713 0.90042 0.92819 0.92798 0.96112 0.89262 0.93632 0.96163 0.92356 0.92675 0.91925 0.89472 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.93 10.57 -39.28 -0.41 -3.34 16 3 C 0.47 4.17 7.49 36.00 0.27 4.44 16 4 O -0.51 -5.78 15.65 -18.75 -0.29 -6.07 16 5 C -0.11 -0.76 4.13 -90.96 -0.38 -1.14 16 6 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 7 C -0.13 -0.89 7.15 -25.92 -0.19 -1.08 16 8 C 0.15 1.30 4.32 -67.12 -0.29 1.01 16 9 H 0.11 1.26 7.47 -51.93 -0.39 0.87 16 10 N -0.74 -7.00 5.27 -57.88 -0.30 -7.31 16 11 C 0.70 10.03 8.53 -86.92 -0.74 9.29 16 12 O -0.58 -11.10 15.61 5.29 0.08 -11.01 16 13 N -0.74 -9.88 5.08 -58.63 -0.30 -10.18 16 14 C 0.17 2.88 2.42 -67.88 -0.16 2.72 16 15 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 16 C 0.17 4.21 5.31 -3.71 -0.02 4.19 16 17 N -0.59 -14.71 2.99 -172.32 -0.52 -15.22 16 18 C -0.25 -6.89 9.59 -15.06 -0.14 -7.04 16 19 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 20 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 21 N -0.90 -26.34 11.19 55.49 0.62 -25.72 16 22 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16 27 C -0.14 -2.24 5.55 -26.61 -0.15 -2.39 16 28 C -0.13 -1.02 7.43 -25.92 -0.19 -1.21 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 32 H 0.11 0.86 7.44 -51.93 -0.39 0.48 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.39 2.53 8.71 -40.82 -0.36 2.17 16 35 H 0.39 3.95 8.62 -40.82 -0.35 3.60 16 36 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.09 2.43 6.03 -51.93 -0.31 2.12 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -34.38 382.57 -9.22 -43.60 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.64 Total: 2.96 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.18 Total: 9.95 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.50 Total: -58.44 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.63 Total: -20.43 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.38 -9.22 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596274672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.685 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds