Wall clock time and date at job start Fri Apr 10 2020 18:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34238 * 116.99709 * 2 1 4 4 O 1.20830 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99829 * 179.97438 * 3 2 1 6 6 H 1.09001 * 112.85230 * 48.80680 * 5 3 2 7 7 C 1.53781 * 113.61430 * 180.02562 * 5 3 2 8 8 C 1.53780 * 87.08238 * 140.06723 * 7 5 3 9 9 H 1.09005 * 113.60709 * 219.93671 * 8 7 5 10 10 N 1.46496 * 113.61283 * 89.11983 * 8 7 5 11 11 C 1.34779 * 119.99641 * 155.27986 * 10 8 7 12 12 O 1.21586 * 120.00010 * 359.71668 * 11 10 8 13 13 N 1.34775 * 119.99760 * 179.72435 * 11 10 8 14 14 C 1.46502 * 120.00047 * 179.97438 * 13 11 10 15 15 C 1.53044 * 109.45570 * 275.06502 * 14 13 11 16 16 C 1.53194 * 109.31016 * 178.61846 * 15 14 13 17 17 N 1.46925 * 108.78021 * 54.62770 * 16 15 14 18 18 C 1.36931 * 120.62963 * 126.36873 * 17 16 15 19 19 H 1.07994 * 120.00423 * 207.69715 * 18 17 16 20 20 C 1.38821 * 119.99653 * 27.69754 * 18 17 16 21 21 N 1.31617 * 120.00108 * 17.36332 * 20 18 17 22 22 Si 1.86809 * 119.99851 * 197.35811 * 20 18 17 23 23 H 1.48498 * 109.47023 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46652 * 120.00498 * 22 20 18 25 25 H 1.48502 * 109.46945 * 240.00155 * 22 20 18 26 26 C 1.46920 * 118.74137 * 306.39837 * 17 16 15 27 27 C 1.53046 * 109.45984 * 154.99629 * 14 13 11 28 28 C 1.53779 * 87.07926 * 334.56454 * 8 7 5 29 29 H 1.08992 * 109.47257 * 59.99998 * 1 2 3 30 30 H 1.08999 * 109.46593 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46830 * 299.99715 * 1 2 3 32 32 H 1.09005 * 113.61381 * 25.51582 * 7 5 3 33 33 H 1.09001 * 113.61457 * 254.62123 * 7 5 3 34 34 H 0.96995 * 120.00136 * 334.99468 * 10 8 7 35 35 H 0.97005 * 119.99982 * 359.97438 * 13 11 10 36 36 H 1.08994 * 109.45864 * 35.02140 * 14 13 11 37 37 H 1.08999 * 109.49614 * 298.56322 * 15 14 13 38 38 H 1.08994 * 109.49806 * 58.66264 * 15 14 13 39 39 H 1.09010 * 109.58273 * 294.84473 * 16 15 14 40 40 H 1.08992 * 109.58648 * 174.42393 * 16 15 14 41 41 H 0.96994 * 120.00250 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.58807 * 293.81612 * 26 17 16 43 43 H 1.09001 * 109.58846 * 173.39028 * 26 17 16 44 44 H 1.08998 * 109.49695 * 301.33179 * 27 14 13 45 45 H 1.08995 * 109.49666 * 61.40073 * 27 14 13 46 46 H 1.08999 * 113.60981 * 139.98111 * 28 8 7 47 47 H 1.08991 * 113.61958 * 270.88231 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0240 0.6364 -0.7549 7 6 4.1077 2.7144 0.0011 8 6 5.1820 2.2262 0.9872 9 1 5.3988 2.9378 1.7840 10 7 6.3907 1.7180 0.3339 11 6 7.5666 1.7255 0.9925 12 8 7.6252 2.1590 2.1270 13 7 8.6775 1.2528 0.3935 14 6 9.9558 1.2615 1.1091 15 6 10.6235 2.6286 0.9433 16 6 11.9431 2.6455 1.7213 17 7 12.7680 1.5132 1.2782 18 6 14.0508 1.7129 0.8428 19 1 14.4916 1.0310 0.1307 20 6 14.7846 2.7918 1.3167 21 7 14.4043 3.4165 2.4109 22 14 16.3120 3.3567 0.4014 23 1 16.5226 2.4948 -0.7893 24 1 16.1358 4.7658 -0.0328 25 1 17.4912 3.2589 1.2987 26 6 12.1901 0.1629 1.3106 27 6 10.8678 0.1736 0.5372 28 6 4.1925 1.1227 1.3968 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.4176 3.4403 0.4313 33 1 4.5097 3.0300 -0.9616 34 1 6.3439 1.3722 -0.5711 35 1 8.6307 0.9067 -0.5115 36 1 9.7807 1.0691 2.1676 37 1 10.8216 2.8110 -0.1129 38 1 9.9634 3.4051 1.3296 39 1 11.7395 2.5537 2.7882 40 1 12.4700 3.5796 1.5268 41 1 14.9172 4.1701 2.7423 42 1 12.0066 -0.1314 2.3440 43 1 12.8799 -0.5411 0.8451 44 1 10.3815 -0.7970 0.6345 45 1 11.0630 0.3789 -0.5153 46 1 4.6631 0.1533 1.5609 47 1 3.5257 1.4133 2.2085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596274672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:42 Heat of formation + Delta-G solvation = -96.080896 kcal Electronic energy + Delta-G solvation = -27513.966623 eV Core-core repulsion = 23504.261170 eV Total energy + Delta-G solvation = -4009.705452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.01233 -41.13817 -39.68827 -38.71008 -37.40654 -35.92542 -34.48155 -33.54740 -31.66903 -31.04097 -29.31473 -27.19215 -26.78169 -26.50831 -23.94873 -23.82647 -22.51242 -21.95467 -21.07919 -20.33391 -19.53876 -18.76714 -18.51751 -17.80214 -17.39866 -17.32827 -16.78878 -16.26181 -16.14351 -15.75202 -15.32370 -15.25876 -14.99709 -14.88836 -14.71655 -14.39888 -14.19681 -13.98719 -13.65278 -13.40559 -13.18837 -13.05405 -13.00666 -12.79123 -12.63394 -12.55537 -12.08824 -11.99999 -11.84622 -11.82239 -11.76630 -11.70185 -11.50100 -11.40157 -11.31334 -11.15728 -10.57283 -10.24721 -9.71820 -8.69594 -7.85503 -5.31138 1.09912 1.47986 1.49866 1.60560 1.67536 1.76753 2.19624 2.53192 3.24182 3.29483 3.33702 3.40308 3.70073 3.77350 3.83548 3.93069 4.11139 4.14696 4.29762 4.32112 4.39220 4.51971 4.55881 4.67982 4.71053 4.71597 4.74519 4.84222 4.85719 4.92830 4.95584 5.04956 5.11388 5.13220 5.17464 5.36140 5.36723 5.49754 5.62331 5.65530 5.66973 5.72927 6.09671 6.40603 6.69025 7.15303 7.19922 7.67420 7.86941 8.39344 9.21654 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038778 B = 0.001942 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.888766 B =14417.442356 C =14653.344950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.101 4.101 6 H 0.152 0.848 7 C -0.115 4.115 8 C 0.137 3.863 9 H 0.087 0.913 10 N -0.712 5.712 11 C 0.701 3.299 12 O -0.636 6.636 13 N -0.723 5.723 14 C 0.181 3.819 15 C -0.130 4.130 16 C 0.181 3.819 17 N -0.609 5.609 18 C -0.258 4.258 19 H 0.075 0.925 20 C -0.056 4.056 21 N -0.939 5.939 22 Si 0.968 3.032 23 H -0.261 1.261 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.140 3.860 27 C -0.120 4.120 28 C -0.128 4.128 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.415 0.585 35 H 0.412 0.588 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.043 0.957 39 H -0.012 1.012 40 H 0.054 0.946 41 H 0.248 0.752 42 H 0.011 0.989 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.557 -9.382 -10.273 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.120 4.120 6 H 0.170 0.830 7 C -0.153 4.153 8 C 0.030 3.970 9 H 0.105 0.895 10 N -0.368 5.368 11 C 0.401 3.599 12 O -0.517 6.517 13 N -0.378 5.378 14 C 0.076 3.924 15 C -0.171 4.171 16 C 0.055 3.945 17 N -0.333 5.333 18 C -0.388 4.388 19 H 0.092 0.908 20 C -0.251 4.251 21 N -0.586 5.586 22 Si 0.796 3.204 23 H -0.185 1.185 24 H -0.220 1.220 25 H -0.222 1.222 26 C 0.014 3.986 27 C -0.159 4.159 28 C -0.168 4.168 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.252 0.748 35 H 0.249 0.751 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.006 0.994 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.029 0.971 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.108 0.892 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.650 -8.617 -9.195 29.479 hybrid contribution 0.611 0.578 -0.488 0.972 sum -26.039 -8.039 -9.682 28.921 Atomic orbital electron populations 1.23535 0.75089 1.05613 1.02444 1.86531 1.24787 1.33129 1.83499 1.24044 0.92493 0.81006 0.70885 1.90662 1.67851 1.37420 1.46763 1.22732 0.85885 1.01289 1.02094 0.83008 1.23290 0.95998 0.94717 1.01325 1.21543 0.82952 0.96145 0.96335 0.89484 1.44531 1.05454 1.68029 1.18765 1.16150 0.81176 0.78439 0.84132 1.90924 1.86024 1.54652 1.20134 1.45072 1.06476 1.67023 1.19244 1.20486 0.81309 0.94978 0.95648 1.22316 0.96828 0.97299 1.00607 1.20481 0.88988 0.92071 0.92996 1.44359 1.11034 1.01824 1.76052 1.19613 0.90167 1.11047 1.18020 0.90752 1.25865 1.01082 1.01398 0.96765 1.70217 1.42162 1.24139 1.22039 0.85195 0.79038 0.77733 0.78405 1.18525 1.22011 1.22175 1.21063 0.93918 0.86809 0.96790 1.22127 0.95195 0.97967 1.00641 1.23377 0.97463 1.01147 0.94772 0.91871 0.85287 0.92194 0.88069 0.88057 0.74778 0.75130 0.92699 0.92044 0.93843 0.99400 0.92762 0.94244 0.97080 0.91350 0.88938 0.90539 0.89236 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.21 10.57 -51.49 -0.54 -5.76 16 3 C 0.47 7.53 7.49 71.24 0.53 8.07 16 4 O -0.54 -11.77 15.65 21.95 0.34 -11.43 16 5 C -0.10 -1.10 4.13 -11.01 -0.05 -1.15 16 6 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 7 C -0.12 -1.41 7.15 31.12 0.22 -1.19 16 8 C 0.14 2.27 4.32 45.52 0.20 2.46 16 9 H 0.09 1.97 7.47 -2.38 -0.02 1.95 16 10 N -0.71 -11.79 5.27 -455.30 -2.40 -14.18 16 11 C 0.70 18.90 8.53 179.05 1.53 20.43 16 12 O -0.64 -24.33 15.61 -3.99 -0.06 -24.39 16 13 N -0.72 -17.45 5.08 -457.67 -2.33 -19.78 16 14 C 0.18 5.97 2.42 45.02 0.11 6.07 16 15 C -0.13 -5.19 5.65 30.67 0.17 -5.02 16 16 C 0.18 9.18 5.31 86.36 0.46 9.64 16 17 N -0.61 -30.44 2.99 -699.10 -2.09 -32.53 16 18 C -0.26 -14.04 9.59 84.04 0.81 -13.23 16 19 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 20 C -0.06 -3.16 4.91 84.86 0.42 -2.74 16 21 N -0.94 -56.99 11.19 21.65 0.24 -56.75 16 22 Si 0.97 44.90 29.59 68.60 2.03 46.93 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 C 0.14 5.52 6.52 86.36 0.56 6.08 16 27 C -0.12 -3.51 5.55 30.67 0.17 -3.34 16 28 C -0.13 -1.74 7.43 31.12 0.23 -1.51 16 29 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 30 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.62 8.13 -2.38 -0.02 0.60 16 32 H 0.10 1.50 7.44 -2.38 -0.02 1.48 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.41 3.63 8.71 -92.71 -0.81 2.82 16 35 H 0.41 6.55 8.62 -92.70 -0.80 5.75 16 36 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 40 H 0.05 3.11 6.03 -2.39 -0.01 3.09 16 41 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 Total: -1.00 -78.26 382.57 1.13 -77.13 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.62 Total: 14.74 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 6.56 Total: 26.01 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.57 Total: -123.24 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.26 Total: -41.57 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -78.26 1.13 -77.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596274672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.948 kcal (2) G-P(sol) polarization free energy of solvation -78.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds