Wall clock time and date at job start Fri Apr 10 2020 18:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48494 * 109.47308 * 240.00288 * 3 2 1 5 5 H 1.48503 * 109.46805 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46801 * 120.00243 * 3 2 1 7 7 C 1.38820 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99811 * 163.42528 * 7 2 1 9 9 N 1.36940 * 119.99822 * 343.41578 * 7 2 1 10 10 C 1.46922 * 120.63206 * 330.26233 * 9 7 2 11 11 C 1.53194 * 108.77152 * 233.58388 * 10 9 7 12 12 C 1.53043 * 109.31305 * 305.36424 * 11 10 9 13 13 N 1.46500 * 109.45745 * 181.38657 * 12 11 10 14 14 C 1.34783 * 119.99898 * 154.97527 * 13 12 11 15 15 O 1.21590 * 119.99816 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00213 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00094 * 180.27588 * 16 14 13 18 18 C 1.52996 * 109.47102 * 179.72409 * 17 16 14 19 19 H 1.09003 * 109.46899 * 304.99405 * 18 17 16 20 20 C 1.52990 * 109.47386 * 64.99750 * 18 17 16 21 21 O 1.42902 * 109.47284 * 183.51770 * 20 18 17 22 22 C 1.53003 * 109.46755 * 185.00064 * 18 17 16 23 23 C 1.53002 * 109.47471 * 66.48905 * 22 18 17 24 24 C 1.52999 * 117.49575 * 242.55872 * 23 22 18 25 25 C 1.53005 * 117.49874 * 173.89665 * 23 22 18 26 26 C 1.53032 * 109.52556 * 61.37385 * 12 11 10 27 27 C 1.46922 * 120.62641 * 150.23580 * 9 7 2 28 28 H 0.97001 * 120.00400 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.59153 * 113.80138 * 10 9 7 30 30 H 1.08992 * 109.70552 * 353.43717 * 10 9 7 31 31 H 1.09007 * 109.49559 * 185.41351 * 11 10 9 32 32 H 1.08998 * 109.52654 * 65.33648 * 11 10 9 33 33 H 1.08998 * 109.45728 * 301.35595 * 12 11 10 34 34 H 0.96996 * 120.00770 * 334.97524 * 13 12 11 35 35 H 0.97001 * 119.99811 * 359.97438 * 16 14 13 36 36 H 1.09004 * 109.47030 * 299.72469 * 17 16 14 37 37 H 1.09003 * 109.47376 * 59.71869 * 17 16 14 38 38 H 1.08996 * 109.47495 * 303.51663 * 20 18 17 39 39 H 1.08998 * 109.47438 * 63.51890 * 20 18 17 40 40 H 0.96699 * 114.00096 * 179.97438 * 21 20 18 41 41 H 1.08999 * 109.46712 * 186.48704 * 22 18 17 42 42 H 1.09004 * 109.47382 * 306.48511 * 22 18 17 43 43 H 1.08998 * 115.54616 * 28.22924 * 23 22 18 44 44 H 1.08996 * 117.50442 * 359.97438 * 24 23 22 45 45 H 1.09000 * 117.49594 * 145.02183 * 24 23 22 46 46 H 1.08989 * 117.49801 * 214.97751 * 25 23 22 47 47 H 1.09004 * 117.49521 * 359.97438 * 25 23 22 48 48 H 1.09000 * 109.50047 * 58.58147 * 26 12 11 49 49 H 1.09008 * 109.49804 * 178.67669 * 26 12 11 50 50 H 1.09007 * 109.58631 * 246.20305 * 27 9 7 51 51 H 1.08999 * 109.58811 * 6.48125 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0566 -1.2215 -0.2674 9 7 1.3682 -2.3636 0.3374 10 6 0.2414 -2.3490 1.2801 11 6 0.5267 -3.3492 2.4049 12 6 0.8208 -4.7230 1.7981 13 7 1.0616 -5.6896 2.8723 14 6 0.8448 -7.0026 2.6585 15 8 0.4490 -7.3847 1.5742 16 7 1.0658 -7.8918 3.6469 17 6 0.8359 -9.3195 3.4127 18 6 1.1662 -10.1045 4.6837 19 1 2.1840 -9.8742 4.9988 20 6 0.1880 -9.7138 5.7932 21 8 0.5467 -10.3851 7.0027 22 6 1.0464 -11.6038 4.4027 23 6 2.1330 -12.0254 3.4114 24 6 1.6792 -12.5777 2.0586 25 6 2.2731 -13.5189 3.1098 26 6 2.0608 -4.6332 0.9057 27 6 1.7928 -3.6478 -0.2363 28 1 -0.4851 0.8400 0.0004 29 1 -0.6734 -2.6345 0.7607 30 1 0.1266 -1.3499 1.7001 31 1 -0.3426 -3.4189 3.0589 32 1 1.3892 -3.0136 2.9808 33 1 -0.0326 -5.0471 1.2025 34 1 1.3770 -5.3848 3.7374 35 1 1.3812 -7.5869 4.5121 36 1 -0.2090 -9.4806 3.1474 37 1 1.4744 -9.6615 2.5981 38 1 0.2284 -8.6360 5.9503 39 1 -0.8229 -10.0012 5.5042 40 1 -0.0319 -10.1835 7.7508 41 1 1.1682 -12.1586 5.3329 42 1 0.0651 -11.8167 3.9784 43 1 3.0446 -11.4282 3.4311 44 1 0.6067 -12.6411 1.8750 45 1 2.2926 -12.3442 1.1884 46 1 3.2768 -13.9041 2.9306 47 1 1.5914 -14.2010 3.6179 48 1 2.9089 -4.2851 1.4953 49 1 2.2836 -5.6169 0.4924 50 1 1.0045 -4.0392 -0.8794 51 1 2.7026 -3.5047 -0.8192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596275875.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:51 Heat of formation + Delta-G solvation = -74.651234 kcal Electronic energy + Delta-G solvation = -27964.090796 eV Core-core repulsion = 24091.147698 eV Total energy + Delta-G solvation = -3872.943098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.24139 -39.60077 -38.90836 -37.65815 -36.25976 -35.80907 -34.06726 -33.19310 -31.72923 -31.02580 -27.87147 -27.12088 -26.21839 -23.96304 -23.61524 -23.17696 -21.89798 -21.78925 -21.19365 -21.01533 -19.40098 -18.68955 -18.15999 -17.45656 -16.84743 -16.63867 -16.54676 -16.04025 -15.88137 -15.57431 -15.35238 -15.17514 -15.11093 -14.77448 -14.64841 -14.30867 -14.10248 -13.91938 -13.60349 -13.20478 -13.00619 -12.86953 -12.57927 -12.53818 -12.53655 -12.39309 -12.23262 -12.14210 -12.02945 -11.87026 -11.74960 -11.56048 -11.38549 -11.20804 -11.05830 -10.87587 -10.65696 -10.54899 -10.28442 -9.71118 -8.68254 -7.87508 -5.34748 1.49261 1.50827 1.58194 1.72396 2.20390 2.52485 2.93069 3.24862 3.26489 3.33954 3.62591 3.67801 3.85843 3.91765 4.03980 4.08151 4.09945 4.17673 4.30415 4.36010 4.47377 4.50570 4.58183 4.61512 4.66255 4.76232 4.80859 4.82174 4.83481 4.86816 4.95359 5.04626 5.07990 5.09252 5.12909 5.17297 5.25441 5.29268 5.30758 5.43085 5.46502 5.52810 5.62436 5.65510 5.69976 6.05748 6.40126 6.91860 7.15090 7.15293 7.64121 7.84074 8.38297 9.19523 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024326 B = 0.002100 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.760764 B =13328.579144 C =14006.631099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.266 4.266 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.127 4.127 12 C 0.182 3.818 13 N -0.727 5.727 14 C 0.699 3.301 15 O -0.636 6.636 16 N -0.733 5.733 17 C 0.150 3.850 18 C -0.085 4.085 19 H 0.087 0.913 20 C 0.080 3.920 21 O -0.587 6.587 22 C -0.070 4.070 23 C -0.158 4.158 24 C -0.190 4.190 25 C -0.177 4.177 26 C -0.123 4.123 27 C 0.145 3.855 28 H 0.251 0.749 29 H -0.006 1.006 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.409 0.591 35 H 0.410 0.590 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.397 0.603 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.006 0.994 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 -23.626 16.312 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.167 4.167 12 C 0.076 3.924 13 N -0.381 5.381 14 C 0.399 3.601 15 O -0.518 6.518 16 N -0.391 5.391 17 C 0.026 3.974 18 C -0.104 4.104 19 H 0.105 0.895 20 C 0.002 3.998 21 O -0.395 6.395 22 C -0.108 4.108 23 C -0.177 4.177 24 C -0.227 4.227 25 C -0.214 4.214 26 C -0.163 4.163 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.013 0.987 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.246 0.754 35 H 0.246 0.754 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.247 0.753 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.024 0.976 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.271 -24.089 14.943 28.439 hybrid contribution -0.070 1.550 0.450 1.616 sum 2.201 -22.539 15.393 27.382 Atomic orbital electron populations 1.70180 1.06715 1.26076 1.55078 1.25878 0.96065 1.01633 1.00874 0.85311 0.77530 0.78989 0.78402 1.20306 1.22053 1.20057 1.19461 0.92685 0.85767 1.41664 0.91624 1.44326 1.37394 1.02541 1.48956 1.20533 0.87988 0.97420 0.88698 1.22253 1.02039 0.93573 0.98802 1.20466 0.96887 0.87388 0.87640 1.45125 1.71859 1.04355 1.16798 1.16163 0.78347 0.81554 0.84074 1.90906 1.54940 1.79568 1.26343 1.45019 1.72686 1.06574 1.14778 1.21170 1.01025 0.77824 0.97394 1.21289 1.00862 0.95577 0.92648 0.89498 1.22183 0.97113 0.95924 0.84578 1.86412 1.59589 1.72123 1.21414 1.21039 0.97402 0.93746 0.98639 1.22407 1.00907 0.96878 0.97468 1.23102 1.01475 1.05059 0.93076 1.23041 1.02700 0.92621 1.03029 1.22177 0.98067 0.98342 0.97759 1.20964 0.97326 0.86059 0.93806 0.93984 0.98745 0.92097 0.90432 0.91062 0.92705 0.75438 0.75359 0.92474 0.91973 0.92576 0.93062 0.75307 0.90229 0.91521 0.88085 0.88730 0.89308 0.88453 0.88202 0.91568 0.92503 0.97634 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 11.30 21.65 0.24 -55.05 16 2 C -0.05 -2.72 4.91 84.86 0.42 -2.31 16 3 Si 0.97 44.51 29.58 68.60 2.03 46.54 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.27 -14.66 9.57 84.03 0.80 -13.85 16 8 H 0.07 3.53 7.88 -2.91 -0.02 3.50 16 9 N -0.61 -31.00 2.98 -699.10 -2.09 -33.09 16 10 C 0.18 8.61 5.28 86.36 0.46 9.06 16 11 C -0.13 -4.48 5.55 30.67 0.17 -4.31 16 12 C 0.18 6.24 2.42 45.02 0.11 6.34 16 13 N -0.73 -18.96 5.08 -457.68 -2.33 -21.28 16 14 C 0.70 19.79 8.53 179.05 1.53 21.32 16 15 O -0.64 -24.48 16.01 -4.00 -0.06 -24.55 16 16 N -0.73 -13.75 5.25 -478.53 -2.51 -16.26 16 17 C 0.15 2.67 4.97 86.38 0.43 3.10 16 18 C -0.08 -1.07 2.08 -10.80 -0.02 -1.10 16 19 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 20 C 0.08 0.84 6.35 71.98 0.46 1.30 16 21 O -0.59 -6.42 13.03 -148.98 -1.94 -8.36 16 22 C -0.07 -0.91 4.91 30.60 0.15 -0.76 16 23 C -0.16 -2.23 4.72 -10.79 -0.05 -2.28 16 24 C -0.19 -2.84 10.18 30.62 0.31 -2.53 16 25 C -0.18 -2.26 10.26 30.62 0.31 -1.95 16 26 C -0.12 -4.49 5.65 30.67 0.17 -4.32 16 27 C 0.14 6.40 6.52 86.36 0.56 6.96 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.06 3.24 6.18 -2.39 -0.01 3.22 16 31 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 34 H 0.41 7.74 8.62 -92.71 -0.80 6.94 16 35 H 0.41 5.03 7.67 -92.71 -0.71 4.32 16 36 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.06 1.32 7.29 -2.39 -0.02 1.30 16 38 H 0.06 0.50 7.10 -2.39 -0.02 0.48 16 39 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.40 1.14 9.12 -74.06 -0.68 0.47 16 41 H 0.08 1.07 7.61 -2.39 -0.02 1.06 16 42 H 0.07 0.85 7.87 -2.38 -0.02 0.83 16 43 H 0.10 1.48 8.05 -2.39 -0.02 1.46 16 44 H 0.09 1.39 8.03 -2.39 -0.02 1.37 16 45 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 50 H 0.01 0.26 8.14 -2.38 -0.02 0.25 16 51 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 Total: -1.00 -72.70 403.37 -2.10 -74.80 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -1.25 Total: 22.56 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 5.81 Total: 14.70 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -6.68 Total: -125.68 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -2.00 Total: -32.91 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -72.70 -2.10 -74.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275875.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.145 kcal (2) G-P(sol) polarization free energy of solvation -72.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds