Wall clock time and date at job start Fri Apr 10 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 114.00046 * 2 1 4 4 C 1.53001 * 109.47233 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47084 * 64.99770 * 4 3 2 6 6 C 1.46502 * 119.99774 * 270.00502 * 5 4 3 7 7 C 1.50704 * 109.46710 * 269.99687 * 6 5 4 8 8 H 1.07999 * 120.00095 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99751 * 180.02562 * 7 6 5 10 10 N 1.31507 * 119.99945 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00017 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47118 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47183 * 119.99903 * 11 9 7 14 14 H 1.48495 * 109.47333 * 240.00158 * 11 9 7 15 15 C 1.34772 * 119.99970 * 90.00378 * 5 4 3 16 16 O 1.21276 * 120.00133 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99790 * 0.02562 * 15 5 4 18 18 C 1.50703 * 109.46840 * 180.02562 * 17 15 5 19 19 N 1.33320 * 126.54744 * 89.97721 * 18 17 15 20 20 N 1.28996 * 107.35081 * 180.02562 * 19 18 17 21 21 N 1.28786 * 108.73147 * 359.97438 * 20 19 18 22 22 C 1.46497 * 125.45150 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47188 * 0.03127 * 22 21 20 24 24 C 1.52992 * 109.47081 * 240.02671 * 22 21 20 25 25 C 1.53006 * 109.46631 * 120.02873 * 22 21 20 26 26 N 1.28881 * 109.09467 * 0.23402 * 21 20 19 27 27 H 1.09005 * 109.46368 * 299.99784 * 1 2 3 28 28 H 1.08998 * 109.47262 * 59.99680 * 1 2 3 29 29 H 1.08998 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47434 * 60.00076 * 3 2 1 31 31 H 1.09002 * 109.47022 * 300.00103 * 3 2 1 32 32 H 1.09006 * 109.46998 * 305.00398 * 4 3 2 33 33 H 1.08994 * 109.47569 * 184.99918 * 4 3 2 34 34 H 1.08993 * 109.47639 * 29.99670 * 6 5 4 35 35 H 1.09001 * 109.47094 * 150.00097 * 6 5 4 36 36 H 0.97001 * 120.00354 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.47569 * 60.00383 * 17 15 5 38 38 H 1.09005 * 109.47214 * 299.99668 * 17 15 5 39 39 H 1.09002 * 109.47153 * 299.99573 * 23 22 21 40 40 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.47261 * 59.99745 * 23 22 21 42 42 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 43 43 H 1.08996 * 109.47747 * 300.00111 * 24 22 21 44 44 H 1.09002 * 109.47103 * 60.00523 * 24 22 21 45 45 H 1.08993 * 109.46955 * 300.00228 * 25 22 21 46 46 H 1.09000 * 109.47050 * 60.00057 * 25 22 21 47 47 H 1.09001 * 109.47002 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.1051 -0.8922 -1.3427 7 6 5.5009 -1.2979 -0.9449 8 1 6.2195 -0.5461 -0.6537 9 6 5.8605 -2.6290 -0.9526 10 7 4.9856 -3.5444 -1.3076 11 14 7.5904 -3.1321 -0.4588 12 1 8.3756 -1.9224 -0.1046 13 1 7.5259 -4.0406 0.7140 14 1 8.2448 -3.8330 -1.5926 15 6 4.2616 1.3336 -2.3218 16 8 4.6264 0.8202 -3.3582 17 6 4.1289 2.8319 -2.2290 18 6 4.5043 3.4521 -3.5502 19 7 3.6832 3.7083 -4.5688 20 7 4.3902 4.2372 -5.5092 21 7 5.6127 4.3179 -5.1120 22 6 6.7258 4.8620 -5.8937 23 6 6.2129 5.3225 -7.2596 24 6 7.7902 3.7801 -6.0868 25 6 7.3370 6.0518 -5.1508 26 7 5.7009 3.8385 -3.9190 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0889 34 1 3.3852 -1.3630 -0.6734 35 1 3.9119 -1.2116 -2.3668 36 1 5.2387 -4.4808 -1.3134 37 1 4.7916 3.2077 -1.4495 38 1 3.0984 3.0911 -1.9861 39 1 5.7775 4.4749 -7.7888 40 1 7.0411 5.7277 -7.8409 41 1 5.4546 6.0933 -7.1219 42 1 8.6186 4.1850 -6.6680 43 1 8.1556 3.4520 -5.1137 44 1 7.3548 2.9324 -6.6160 45 1 6.5787 6.8226 -5.0131 46 1 7.7024 5.7238 -4.1776 47 1 8.1656 6.4564 -5.7321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597135164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:55 Heat of formation + Delta-G solvation = 16.674855 kcal Electronic energy + Delta-G solvation = -28566.356604 eV Core-core repulsion = 24593.833359 eV Total energy + Delta-G solvation = -3972.523245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.190 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.37186 -40.81387 -38.76002 -38.54634 -36.54790 -34.92278 -34.54499 -34.10621 -31.33159 -30.61030 -28.79473 -28.52602 -28.29355 -27.05213 -25.63356 -25.06099 -24.01594 -23.17642 -21.59794 -20.09798 -18.67421 -18.49017 -18.06773 -17.82850 -17.39531 -16.96553 -16.67221 -16.32647 -16.13204 -15.55024 -15.38227 -15.17998 -15.11728 -14.72843 -14.44910 -14.40436 -14.00973 -13.58618 -13.43452 -13.40554 -13.22595 -13.11268 -13.02502 -12.89987 -12.85828 -12.76066 -12.68349 -12.55838 -12.53555 -12.17884 -12.16136 -11.94264 -11.88956 -11.84388 -11.63801 -11.26646 -10.61834 -10.61219 -10.47193 -9.42113 -8.18223 -6.32788 0.22740 0.94432 1.07099 1.35957 1.38443 1.50453 1.77097 2.29676 2.44964 2.83080 3.03034 3.11735 3.16166 3.52028 3.59260 3.64775 3.67835 4.14620 4.21097 4.32022 4.37811 4.44602 4.46346 4.52077 4.52746 4.57957 4.60138 4.61588 4.64863 4.68439 4.71436 4.72812 4.79113 4.90254 5.01358 5.03147 5.11106 5.20621 5.22805 5.31407 5.37240 5.59986 5.88352 6.11521 6.39750 6.74155 6.81112 7.29793 7.34219 7.45695 8.89372 Molecular weight = 325.19amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.003837 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.267544 B = 7295.580093 C = 9313.652981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.418 6.418 3 C 0.040 3.960 4 C 0.100 3.900 5 N -0.589 5.589 6 C 0.274 3.726 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.004 3.996 10 N -0.930 5.930 11 Si 0.968 3.032 12 H -0.264 1.264 13 H -0.269 1.269 14 H -0.284 1.284 15 C 0.504 3.496 16 O -0.598 6.598 17 C -0.034 4.034 18 C 0.178 3.822 19 N -0.309 5.309 20 N -0.077 5.077 21 N -0.120 5.120 22 C 0.161 3.839 23 C -0.147 4.147 24 C -0.158 4.158 25 C -0.150 4.150 26 N -0.306 5.306 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.031 0.969 35 H -0.017 1.017 36 H 0.265 0.735 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.057 0.943 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 23.606 -2.060 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.338 6.338 3 C -0.037 4.037 4 C -0.023 4.023 5 N -0.319 5.319 6 C 0.152 3.848 7 C -0.579 4.579 8 H 0.074 0.926 9 C -0.194 4.194 10 N -0.570 5.570 11 Si 0.792 3.208 12 H -0.188 1.188 13 H -0.194 1.194 14 H -0.211 1.211 15 C 0.291 3.709 16 O -0.479 6.479 17 C -0.076 4.076 18 C -0.105 4.105 19 N -0.179 5.179 20 N -0.069 5.069 21 N -0.036 5.036 22 C 0.082 3.918 23 C -0.205 4.205 24 C -0.216 4.216 25 C -0.208 4.208 26 N -0.157 5.157 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.049 0.951 35 H 0.001 0.999 36 H 0.074 0.926 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.076 0.924 40 H 0.145 0.855 41 H 0.092 0.908 42 H 0.149 0.851 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.948 23.237 -3.232 23.480 hybrid contribution 0.314 -1.304 0.422 1.406 sum 1.262 21.933 -2.811 22.148 Atomic orbital electron populations 1.22838 0.80170 1.02920 1.00820 1.88042 1.21031 1.29198 1.95541 1.23259 0.93439 0.84818 1.02146 1.22032 0.93299 1.00736 0.86193 1.48072 1.64082 1.07840 1.11951 1.18631 0.95635 0.75653 0.94857 1.21807 0.98248 0.92645 1.45189 0.92578 1.25889 1.01869 0.96448 0.95205 1.70094 1.36551 1.01377 1.49003 0.85369 0.79052 0.78433 0.77948 1.18769 1.19367 1.21055 1.20796 0.77241 0.89616 0.83225 1.90666 1.49129 1.76324 1.31816 1.20113 1.07670 0.89389 0.90449 1.25048 0.85616 1.00973 0.98855 1.75710 1.27552 1.15560 0.99060 1.78733 0.90847 1.15875 1.21483 1.50964 1.08733 1.35546 1.08372 1.22027 0.81776 0.95974 0.92056 1.22132 1.04084 1.02524 0.91796 1.22277 0.98476 0.97164 1.03700 1.22236 1.02625 0.94394 1.01528 1.74506 1.24536 1.16715 0.99943 0.91758 0.93921 0.90377 0.88477 0.92718 0.90059 0.84912 0.95122 0.99922 0.92621 0.82794 0.83065 0.92383 0.85469 0.90779 0.85139 0.92256 0.93637 0.91461 0.91639 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.42 -14.33 9.53 -148.98 -1.42 -15.75 16 3 C 0.04 1.03 6.28 71.98 0.45 1.48 16 4 C 0.10 2.96 5.62 86.38 0.49 3.44 16 5 N -0.59 -25.66 2.42 -826.15 -2.00 -27.66 16 6 C 0.27 15.61 4.98 85.63 0.43 16.03 16 7 C -0.54 -32.35 9.39 25.60 0.24 -32.11 16 8 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 9 C 0.00 0.26 5.46 84.66 0.46 0.72 16 10 N -0.93 -58.95 13.29 21.45 0.28 -58.66 16 11 Si 0.97 46.42 29.54 68.60 2.03 48.45 16 12 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 14 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 15 C 0.50 22.01 7.67 87.66 0.67 22.68 16 16 O -0.60 -33.67 15.61 -3.02 -0.05 -33.72 16 17 C -0.03 -1.01 4.88 29.10 0.14 -0.87 16 18 C 0.18 6.26 6.86 138.55 0.95 7.21 16 19 N -0.31 -11.52 12.50 -51.26 -0.64 -12.16 16 20 N -0.08 -2.61 12.24 37.02 0.45 -2.15 16 21 N -0.12 -3.55 3.73 -152.40 -0.57 -4.12 16 22 C 0.16 3.00 1.30 3.60 0.00 3.01 16 23 C -0.15 -2.02 7.91 71.98 0.57 -1.45 16 24 C -0.16 -2.94 8.66 71.98 0.62 -2.31 16 25 C -0.15 -1.87 8.67 71.98 0.62 -1.25 16 26 N -0.31 -10.32 11.83 -51.20 -0.61 -10.92 16 27 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.30 7.30 -2.39 -0.02 1.28 16 32 H 0.08 2.65 8.07 -2.38 -0.02 2.63 16 33 H 0.13 2.55 6.44 -2.39 -0.02 2.53 16 34 H 0.03 1.83 7.11 -2.39 -0.02 1.81 16 35 H -0.02 -1.17 7.42 -2.39 -0.02 -1.19 16 36 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.15 3.34 7.40 -2.39 -0.02 3.33 16 38 H 0.15 3.36 7.26 -2.38 -0.02 3.34 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -92.86 393.65 5.34 -87.52 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.95 Total: 10.62 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.90 Total: 18.56 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -3.07 Total: -115.68 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -1.47 Total: -49.46 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -92.86 5.34 -87.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597135164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.193 kcal (2) G-P(sol) polarization free energy of solvation -92.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds