Wall clock time and date at job start Fri Apr 10 2020 18:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21286 * 120.00270 * 2 1 4 4 N 1.34775 * 120.00195 * 179.97438 * 2 1 3 5 5 C 1.46495 * 120.00351 * 179.97438 * 4 2 1 6 6 H 1.08994 * 109.47443 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47183 * 299.99851 * 5 4 2 8 8 C 1.52991 * 109.47379 * 295.00100 * 7 5 4 9 9 C 1.53001 * 109.47717 * 180.02562 * 8 7 5 10 10 C 1.52994 * 109.47465 * 174.99957 * 9 8 7 11 11 C 1.52999 * 109.46718 * 294.99884 * 9 8 7 12 12 C 1.50705 * 109.47047 * 59.99576 * 5 4 2 13 13 O 1.21282 * 120.00162 * 340.00429 * 12 5 4 14 14 N 1.34784 * 119.99727 * 160.00038 * 12 5 4 15 15 C 1.46961 * 120.59594 * 359.71926 * 14 12 5 16 16 C 1.53808 * 108.39474 * 124.75722 * 15 14 12 17 17 N 1.46966 * 108.58139 * 49.64076 * 16 15 14 18 18 C 1.36934 * 120.59770 * 124.62118 * 17 16 15 19 19 H 1.07995 * 120.00803 * 207.36756 * 18 17 16 20 20 C 1.38813 * 119.99816 * 27.36433 * 18 17 16 21 21 N 1.31622 * 120.00077 * 215.24731 * 20 18 17 22 22 Si 1.86804 * 120.00097 * 35.24721 * 20 18 17 23 23 H 1.48494 * 109.47289 * 95.37138 * 22 20 18 24 24 H 1.48502 * 109.47144 * 215.37206 * 22 20 18 25 25 H 1.48499 * 109.46971 * 335.36978 * 22 20 18 26 26 C 1.46964 * 118.81154 * 304.64775 * 17 16 15 27 27 C 1.46964 * 120.58937 * 180.02562 * 14 12 5 28 28 H 1.09001 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46799 * 300.00385 * 1 2 3 30 30 H 1.09007 * 109.46948 * 60.00046 * 1 2 3 31 31 H 0.97002 * 119.99722 * 359.97438 * 4 2 1 32 32 H 1.09003 * 109.47508 * 174.99748 * 7 5 4 33 33 H 1.09004 * 109.47041 * 54.99698 * 7 5 4 34 34 H 1.09008 * 109.47197 * 299.99737 * 8 7 5 35 35 H 1.09005 * 109.47598 * 59.99421 * 8 7 5 36 36 H 1.09004 * 109.47034 * 54.99334 * 9 8 7 37 37 H 1.09004 * 109.47503 * 59.99664 * 10 9 8 38 38 H 1.09001 * 109.47206 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47163 * 299.99604 * 10 9 8 40 40 H 1.09001 * 109.46761 * 179.97438 * 11 9 8 41 41 H 1.08996 * 109.47490 * 299.99730 * 11 9 8 42 42 H 1.09001 * 109.47072 * 59.99892 * 11 9 8 43 43 H 1.08989 * 109.61218 * 244.54176 * 15 14 12 44 44 H 1.09001 * 109.60728 * 5.05759 * 15 14 12 45 45 H 1.08997 * 109.74556 * 289.85107 * 16 15 14 46 46 H 1.09009 * 109.53492 * 169.30670 * 16 15 14 47 47 H 0.97000 * 120.00035 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.60753 * 295.47706 * 26 17 16 49 49 H 1.08997 * 109.61149 * 174.97098 * 26 17 16 50 50 H 1.09000 * 109.61525 * 354.94547 * 27 14 12 51 51 H 1.09003 * 109.60852 * 115.46261 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0092 -2.1948 0.0010 7 6 4.1554 -0.4469 -1.2500 8 6 3.7502 -1.2378 -2.4953 9 6 4.2602 -0.5178 -3.7453 10 6 3.9646 -1.3699 -4.9811 11 6 3.5565 0.8343 -3.8778 12 6 4.1487 -0.4559 1.2297 13 8 3.4205 0.3060 1.8299 14 7 5.4076 -0.6665 1.6626 15 6 6.2991 -1.5916 0.9490 16 6 7.5852 -0.8352 0.5756 17 7 8.0891 -0.1485 1.7733 18 6 9.3678 -0.3631 2.2136 19 1 9.6055 -0.2449 3.2604 20 6 10.3587 -0.7326 1.3144 21 7 11.3065 -1.5671 1.6858 22 14 10.3470 -0.0457 -0.4227 23 1 11.2342 1.1431 -0.4909 24 1 10.8344 -1.0820 -1.3681 25 1 8.9630 0.3478 -0.7900 26 6 7.1958 0.7723 2.4902 27 6 5.9112 0.0199 2.8606 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6959 -2.0072 0.0013 32 1 5.2418 -0.3686 -1.2068 33 1 3.7207 0.5517 -1.2964 34 1 4.1848 -2.2364 -2.4489 35 1 2.6638 -1.3161 -2.5385 36 1 5.3356 -0.3609 -3.6608 37 1 2.8892 -1.5268 -5.0655 38 1 4.3284 -0.8572 -5.8715 39 1 4.4659 -2.3332 -4.8867 40 1 3.9202 1.3474 -4.7680 41 1 2.4812 0.6775 -3.9622 42 1 3.7672 1.4413 -2.9973 43 1 6.5421 -2.4359 1.5938 44 1 5.8071 -1.9487 0.0442 45 1 7.3691 -0.1029 -0.2023 46 1 8.3333 -1.5428 0.2176 47 1 11.9991 -1.8250 1.0575 48 1 6.9520 1.6191 1.8487 49 1 7.6866 1.1264 3.3968 50 1 5.1632 0.7272 3.2187 51 1 6.1274 -0.7128 3.6382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597272650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:59 Heat of formation + Delta-G solvation = -46.953108 kcal Electronic energy + Delta-G solvation = -30224.348846 eV Core-core repulsion = 26352.606829 eV Total energy + Delta-G solvation = -3871.742017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.61039 -38.83896 -37.07740 -36.82827 -34.70089 -33.89927 -32.04564 -31.39638 -30.56081 -29.41171 -27.58768 -27.27460 -26.18302 -23.54612 -23.21078 -22.47369 -21.28856 -20.19727 -19.89731 -18.58226 -17.73170 -16.91619 -16.22445 -16.05778 -15.46355 -15.45234 -14.82730 -14.72275 -14.57651 -14.33697 -14.20534 -13.84845 -13.77323 -13.44336 -13.22468 -13.09454 -12.84798 -12.66413 -12.49730 -12.34998 -12.14813 -12.08434 -11.92604 -11.77144 -11.65502 -11.33707 -11.00275 -10.83114 -10.80894 -10.71432 -10.61436 -10.46387 -10.34639 -10.15705 -9.84342 -9.48793 -9.46636 -8.76544 -8.69477 -8.18378 -7.00141 -6.10082 -3.31683 2.73303 2.93683 3.11845 3.33739 3.46666 3.52510 3.53171 4.49675 4.51987 4.69316 4.72564 4.82526 4.83149 4.87233 4.96611 5.06595 5.18987 5.23601 5.30036 5.32230 5.46313 5.53501 5.55894 5.59077 5.63249 5.67023 5.71790 5.74567 5.82440 5.83614 5.89833 5.95958 6.05725 6.08414 6.11278 6.13065 6.25906 6.28139 6.37087 6.45889 6.51066 6.60251 6.77417 6.97788 7.50959 7.81615 7.87746 8.24072 8.36020 8.58406 8.87430 9.65384 10.05740 11.04518 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.004537 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.357979 B = 6170.426909 C = 7813.448655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.514 3.486 3 O -0.512 6.512 4 N -0.722 5.722 5 C 0.135 3.865 6 H 0.105 0.895 7 C -0.139 4.139 8 C -0.106 4.106 9 C -0.099 4.099 10 C -0.145 4.145 11 C -0.148 4.148 12 C 0.500 3.500 13 O -0.526 6.526 14 N -0.600 5.600 15 C 0.083 3.917 16 C 0.132 3.868 17 N -0.599 5.599 18 C -0.273 4.273 19 H 0.083 0.917 20 C 0.039 3.961 21 N -0.883 5.883 22 Si 0.835 3.165 23 H -0.292 1.292 24 H -0.294 1.294 25 H -0.255 1.255 26 C 0.133 3.867 27 C 0.098 3.902 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.400 0.600 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.034 0.966 46 H 0.076 0.924 47 H 0.263 0.737 48 H 0.026 0.974 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.403 -3.599 -9.174 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.300 3.700 3 O -0.385 6.385 4 N -0.375 5.375 5 C 0.026 3.974 6 H 0.123 0.877 7 C -0.177 4.177 8 C -0.144 4.144 9 C -0.117 4.117 10 C -0.202 4.202 11 C -0.205 4.205 12 C 0.286 3.714 13 O -0.401 6.401 14 N -0.334 5.334 15 C -0.042 4.042 16 C 0.005 3.995 17 N -0.323 5.323 18 C -0.400 4.400 19 H 0.100 0.900 20 C -0.162 4.162 21 N -0.523 5.523 22 Si 0.662 3.338 23 H -0.220 1.220 24 H -0.220 1.220 25 H -0.180 1.180 26 C 0.006 3.994 27 C -0.026 4.026 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.234 0.766 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.044 0.956 49 H 0.092 0.908 50 H 0.101 0.899 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.183 -2.487 -8.851 22.179 hybrid contribution 0.187 -0.181 -0.992 1.026 sum -19.996 -2.667 -9.843 22.447 Atomic orbital electron populations 1.21819 0.92399 1.03628 1.04948 1.20573 0.90076 0.83699 0.75615 1.90729 1.70028 1.31133 1.46644 1.45762 1.05512 1.08946 1.77317 1.20885 0.81469 1.00778 0.94240 0.87714 1.22080 1.01959 1.01863 0.91789 1.21583 1.00904 0.98536 0.93358 1.21119 1.00611 0.95418 0.94584 1.21826 1.01281 0.99687 0.97456 1.21870 1.00063 0.96773 1.01779 1.20741 0.81841 0.82904 0.85942 1.90688 1.55695 1.36187 1.57562 1.48000 1.11851 1.44772 1.28809 1.22643 0.92557 0.92868 0.96106 1.21804 0.92955 0.94981 0.89720 1.44265 1.10917 1.47286 1.29784 1.18794 0.83464 1.44038 0.93734 0.89990 1.25227 0.95908 0.97805 0.97284 1.70084 1.16416 1.29190 1.36582 0.87628 0.79143 0.80092 0.86934 1.21993 1.22044 1.17967 1.21356 0.89728 0.91435 0.96877 1.22158 0.97159 0.96858 0.86376 0.91052 0.88981 0.89213 0.76575 0.90386 0.88560 0.92007 0.91985 0.91015 0.92952 0.92859 0.92716 0.93056 0.93062 0.92144 0.90947 0.90849 0.94828 0.90572 0.92727 0.95564 0.90813 0.89854 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.39 36.01 0.37 -1.00 16 2 C 0.51 6.56 6.70 -10.99 -0.07 6.48 16 3 O -0.51 -9.14 12.96 -17.95 -0.23 -9.37 16 4 N -0.72 -7.59 4.65 -54.94 -0.26 -7.85 16 5 C 0.14 1.69 2.15 -69.08 -0.15 1.54 16 6 H 0.11 1.04 6.75 -51.93 -0.35 0.69 16 7 C -0.14 -1.76 3.98 -26.74 -0.11 -1.87 16 8 C -0.11 -1.04 4.57 -26.73 -0.12 -1.16 16 9 C -0.10 -0.99 2.92 -90.62 -0.26 -1.26 16 10 C -0.15 -1.22 9.19 37.15 0.34 -0.88 16 11 C -0.15 -1.55 8.95 37.16 0.33 -1.22 16 12 C 0.50 8.48 6.69 -10.98 -0.07 8.41 16 13 O -0.53 -10.70 13.08 -17.94 -0.23 -10.93 16 14 N -0.60 -10.36 2.94 -172.19 -0.51 -10.86 16 15 C 0.08 1.35 5.93 -3.37 -0.02 1.33 16 16 C 0.13 2.70 4.53 -3.37 -0.02 2.68 16 17 N -0.60 -13.80 2.70 -171.74 -0.46 -14.27 16 18 C -0.27 -7.35 9.86 -15.06 -0.15 -7.50 16 19 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 20 C 0.04 1.08 4.85 -17.43 -0.08 0.99 16 21 N -0.88 -25.91 13.97 55.49 0.78 -25.14 16 22 Si 0.83 20.58 26.43 -169.99 -4.49 16.09 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.26 -5.95 4.82 56.52 0.27 -5.68 16 26 C 0.13 2.68 6.67 -3.58 -0.02 2.65 16 27 C 0.10 1.78 6.59 -3.58 -0.02 1.76 16 28 H 0.07 0.37 7.91 -51.93 -0.41 -0.05 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 2.69 8.67 -40.82 -0.35 2.33 16 32 H 0.08 1.09 6.89 -51.93 -0.36 0.73 16 33 H 0.10 1.49 4.47 -51.93 -0.23 1.26 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 43 H 0.07 1.19 8.14 -51.94 -0.42 0.77 16 44 H 0.07 0.95 4.87 -51.93 -0.25 0.69 16 45 H 0.03 0.70 6.57 -51.93 -0.34 0.36 16 46 H 0.08 1.65 5.59 -51.92 -0.29 1.36 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.07 1.44 7.93 -51.93 -0.41 1.03 16 50 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 51 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -34.71 384.78 -8.54 -43.25 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.87 Total: 2.32 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -0.06 Total: 10.97 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.45 Total: -58.12 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.47 Total: -20.31 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.49 Total: 16.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.71 -8.54 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597272650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.706 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds