Wall clock time and date at job start Fri Apr 10 2020 18:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21286 * 120.00270 * 2 1 4 4 N 1.34775 * 120.00195 * 179.97438 * 2 1 3 5 5 C 1.46495 * 120.00351 * 179.97438 * 4 2 1 6 6 H 1.08994 * 109.47443 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47183 * 299.99851 * 5 4 2 8 8 C 1.52991 * 109.47379 * 295.00100 * 7 5 4 9 9 C 1.53001 * 109.47717 * 180.02562 * 8 7 5 10 10 C 1.52994 * 109.47465 * 174.99957 * 9 8 7 11 11 C 1.52999 * 109.46718 * 294.99884 * 9 8 7 12 12 C 1.50705 * 109.47047 * 59.99576 * 5 4 2 13 13 O 1.21282 * 120.00162 * 340.00429 * 12 5 4 14 14 N 1.34784 * 119.99727 * 160.00038 * 12 5 4 15 15 C 1.46961 * 120.59594 * 359.71926 * 14 12 5 16 16 C 1.53808 * 108.39474 * 124.75722 * 15 14 12 17 17 N 1.46966 * 108.58139 * 49.64076 * 16 15 14 18 18 C 1.36934 * 120.59770 * 124.62118 * 17 16 15 19 19 H 1.07995 * 120.00803 * 207.36756 * 18 17 16 20 20 C 1.38813 * 119.99816 * 27.36433 * 18 17 16 21 21 N 1.31622 * 120.00077 * 215.24731 * 20 18 17 22 22 Si 1.86804 * 120.00097 * 35.24721 * 20 18 17 23 23 H 1.48494 * 109.47289 * 95.37138 * 22 20 18 24 24 H 1.48502 * 109.47144 * 215.37206 * 22 20 18 25 25 H 1.48499 * 109.46971 * 335.36978 * 22 20 18 26 26 C 1.46964 * 118.81154 * 304.64775 * 17 16 15 27 27 C 1.46964 * 120.58937 * 180.02562 * 14 12 5 28 28 H 1.09001 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46799 * 300.00385 * 1 2 3 30 30 H 1.09007 * 109.46948 * 60.00046 * 1 2 3 31 31 H 0.97002 * 119.99722 * 359.97438 * 4 2 1 32 32 H 1.09003 * 109.47508 * 174.99748 * 7 5 4 33 33 H 1.09004 * 109.47041 * 54.99698 * 7 5 4 34 34 H 1.09008 * 109.47197 * 299.99737 * 8 7 5 35 35 H 1.09005 * 109.47598 * 59.99421 * 8 7 5 36 36 H 1.09004 * 109.47034 * 54.99334 * 9 8 7 37 37 H 1.09004 * 109.47503 * 59.99664 * 10 9 8 38 38 H 1.09001 * 109.47206 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47163 * 299.99604 * 10 9 8 40 40 H 1.09001 * 109.46761 * 179.97438 * 11 9 8 41 41 H 1.08996 * 109.47490 * 299.99730 * 11 9 8 42 42 H 1.09001 * 109.47072 * 59.99892 * 11 9 8 43 43 H 1.08989 * 109.61218 * 244.54176 * 15 14 12 44 44 H 1.09001 * 109.60728 * 5.05759 * 15 14 12 45 45 H 1.08997 * 109.74556 * 289.85107 * 16 15 14 46 46 H 1.09009 * 109.53492 * 169.30670 * 16 15 14 47 47 H 0.97000 * 120.00035 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.60753 * 295.47706 * 26 17 16 49 49 H 1.08997 * 109.61149 * 174.97098 * 26 17 16 50 50 H 1.09000 * 109.61525 * 354.94547 * 27 14 12 51 51 H 1.09003 * 109.60852 * 115.46261 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0092 -2.1948 0.0010 7 6 4.1554 -0.4469 -1.2500 8 6 3.7502 -1.2378 -2.4953 9 6 4.2602 -0.5178 -3.7453 10 6 3.9646 -1.3699 -4.9811 11 6 3.5565 0.8343 -3.8778 12 6 4.1487 -0.4559 1.2297 13 8 3.4205 0.3060 1.8299 14 7 5.4076 -0.6665 1.6626 15 6 6.2991 -1.5916 0.9490 16 6 7.5852 -0.8352 0.5756 17 7 8.0891 -0.1485 1.7733 18 6 9.3678 -0.3631 2.2136 19 1 9.6055 -0.2449 3.2604 20 6 10.3587 -0.7326 1.3144 21 7 11.3065 -1.5671 1.6858 22 14 10.3470 -0.0457 -0.4227 23 1 11.2342 1.1431 -0.4909 24 1 10.8344 -1.0820 -1.3681 25 1 8.9630 0.3478 -0.7900 26 6 7.1958 0.7723 2.4902 27 6 5.9112 0.0199 2.8606 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6959 -2.0072 0.0013 32 1 5.2418 -0.3686 -1.2068 33 1 3.7207 0.5517 -1.2964 34 1 4.1848 -2.2364 -2.4489 35 1 2.6638 -1.3161 -2.5385 36 1 5.3356 -0.3609 -3.6608 37 1 2.8892 -1.5268 -5.0655 38 1 4.3284 -0.8572 -5.8715 39 1 4.4659 -2.3332 -4.8867 40 1 3.9202 1.3474 -4.7680 41 1 2.4812 0.6775 -3.9622 42 1 3.7672 1.4413 -2.9973 43 1 6.5421 -2.4359 1.5938 44 1 5.8071 -1.9487 0.0442 45 1 7.3691 -0.1029 -0.2023 46 1 8.3333 -1.5428 0.2176 47 1 11.9991 -1.8250 1.0575 48 1 6.9520 1.6191 1.8487 49 1 7.6866 1.1264 3.3968 50 1 5.1632 0.7272 3.2187 51 1 6.1274 -0.7128 3.6382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597272650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:58 Heat of formation + Delta-G solvation = -69.921124 kcal Electronic energy + Delta-G solvation = -30225.344814 eV Core-core repulsion = 26352.606829 eV Total energy + Delta-G solvation = -3872.737985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.77575 -40.07716 -38.40899 -37.91704 -35.73894 -35.56373 -33.63281 -32.80227 -31.99757 -30.15579 -29.11466 -28.02951 -27.37514 -25.21562 -24.76921 -23.46887 -22.63961 -21.43573 -20.72848 -20.05549 -18.81798 -18.48972 -17.54983 -17.37350 -16.88575 -16.37554 -16.28765 -16.05962 -15.91395 -15.73883 -15.41634 -15.08742 -14.83930 -14.66281 -14.42192 -14.38405 -14.15336 -14.13904 -13.71629 -13.47480 -13.23278 -13.08883 -12.86879 -12.81762 -12.70253 -12.61730 -12.51616 -12.27369 -12.16889 -12.09616 -11.90095 -11.62869 -11.51798 -11.41737 -11.40167 -11.03114 -10.68543 -10.49748 -9.89452 -9.80620 -8.87204 -8.23581 -5.42452 1.33987 1.46770 1.53180 1.61444 1.74926 2.08675 2.43112 2.45664 2.94401 3.34876 3.43419 3.78073 3.85483 4.00547 4.07355 4.09983 4.13721 4.18161 4.29804 4.32831 4.40798 4.45316 4.54996 4.56352 4.60141 4.66620 4.71115 4.74222 4.79936 4.83679 4.85131 4.89844 4.98095 5.01665 5.04766 5.10686 5.14502 5.17408 5.26397 5.38978 5.44755 5.51108 5.54092 5.58954 5.84440 6.09906 6.48702 6.72269 6.88516 7.21069 7.54048 7.60201 8.03327 8.94621 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.004537 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.357979 B = 6170.426909 C = 7813.448655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.504 3.496 3 O -0.570 6.570 4 N -0.706 5.706 5 C 0.139 3.861 6 H 0.143 0.857 7 C -0.133 4.133 8 C -0.097 4.097 9 C -0.101 4.101 10 C -0.140 4.140 11 C -0.145 4.145 12 C 0.494 3.506 13 O -0.562 6.562 14 N -0.605 5.605 15 C 0.095 3.905 16 C 0.126 3.874 17 N -0.611 5.611 18 C -0.265 4.265 19 H 0.051 0.949 20 C -0.006 4.006 21 N -0.927 5.927 22 Si 0.896 3.104 23 H -0.307 1.307 24 H -0.288 1.288 25 H -0.236 1.236 26 C 0.134 3.866 27 C 0.108 3.892 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.422 0.578 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.033 0.967 46 H 0.065 0.935 47 H 0.264 0.736 48 H 0.020 0.980 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.996 -5.614 -11.258 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.292 3.708 3 O -0.448 6.448 4 N -0.362 5.362 5 C 0.030 3.970 6 H 0.160 0.840 7 C -0.171 4.171 8 C -0.135 4.135 9 C -0.120 4.120 10 C -0.198 4.198 11 C -0.202 4.202 12 C 0.282 3.718 13 O -0.440 6.440 14 N -0.338 5.338 15 C -0.029 4.029 16 C 0.001 3.999 17 N -0.335 5.335 18 C -0.394 4.394 19 H 0.069 0.931 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.723 3.277 23 H -0.236 1.236 24 H -0.215 1.215 25 H -0.160 1.160 26 C 0.008 3.992 27 C -0.017 4.017 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.261 0.739 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.133 0.867 45 H 0.050 0.950 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.038 0.962 49 H 0.091 0.909 50 H 0.098 0.902 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.841 -4.549 -10.962 25.740 hybrid contribution 0.965 0.518 -0.257 1.124 sum -21.876 -4.031 -11.218 24.913 Atomic orbital electron populations 1.21826 0.88835 1.06199 1.05150 1.21437 0.91901 0.83248 0.74190 1.90716 1.71532 1.33293 1.49266 1.45669 1.04736 1.09646 1.76101 1.20927 0.82714 1.01838 0.91552 0.84006 1.21985 1.00770 1.01019 0.93350 1.21547 1.01694 0.98852 0.91383 1.21135 0.99696 0.95353 0.95781 1.21779 1.02040 0.99594 0.96361 1.21837 1.00641 0.97061 1.00674 1.21612 0.81149 0.82371 0.86658 1.90677 1.56605 1.37760 1.58936 1.48099 1.12397 1.44843 1.28488 1.22540 0.90677 0.91829 0.97822 1.21860 0.94650 0.94862 0.88574 1.44368 1.09989 1.48431 1.30699 1.18711 0.85384 1.42783 0.92544 0.93143 1.25671 0.95879 0.98139 1.00743 1.70153 1.17742 1.31021 1.38133 0.86669 0.79665 0.78582 0.82797 1.23580 1.21489 1.15997 1.21387 0.90268 0.91150 0.96429 1.21910 0.95747 0.96809 0.87187 0.87307 0.89533 0.88170 0.73928 0.91798 0.91628 0.89735 0.90883 0.92340 0.91980 0.92880 0.91870 0.92686 0.92381 0.94762 0.90561 0.86657 0.94969 0.91665 0.92698 0.96208 0.90943 0.90164 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 10.39 71.24 0.74 -1.43 16 2 C 0.50 11.94 6.70 87.66 0.59 12.53 16 3 O -0.57 -20.40 12.96 19.42 0.25 -20.15 16 4 N -0.71 -12.57 4.65 -446.11 -2.07 -14.65 16 5 C 0.14 3.04 2.15 44.25 0.10 3.13 16 6 H 0.14 2.06 6.75 -2.39 -0.02 2.04 16 7 C -0.13 -3.10 3.98 30.59 0.12 -2.97 16 8 C -0.10 -1.56 4.57 30.59 0.14 -1.42 16 9 C -0.10 -1.80 2.92 -10.80 -0.03 -1.83 16 10 C -0.14 -1.91 9.19 71.98 0.66 -1.25 16 11 C -0.14 -2.91 8.95 71.98 0.64 -2.26 16 12 C 0.49 15.98 6.69 87.66 0.59 16.57 16 13 O -0.56 -22.65 13.08 19.43 0.25 -22.40 16 14 N -0.60 -19.92 2.94 -817.09 -2.40 -22.32 16 15 C 0.10 2.85 5.93 86.56 0.51 3.36 16 16 C 0.13 4.97 4.53 86.56 0.39 5.36 16 17 N -0.61 -28.08 2.70 -697.28 -1.88 -29.96 16 18 C -0.27 -14.54 9.86 84.03 0.83 -13.72 16 19 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 20 C -0.01 -0.35 4.85 84.86 0.41 0.06 16 21 N -0.93 -55.46 13.97 21.65 0.30 -55.16 16 22 Si 0.90 42.95 26.43 68.60 1.81 44.76 16 23 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.24 -10.48 4.82 99.48 0.48 -10.00 16 26 C 0.13 5.44 6.67 86.43 0.58 6.02 16 27 C 0.11 3.87 6.59 86.43 0.57 4.44 16 28 H 0.11 0.62 7.91 -2.39 -0.02 0.60 16 29 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.42 3.70 8.67 -92.71 -0.80 2.90 16 32 H 0.06 1.65 6.89 -2.39 -0.02 1.64 16 33 H 0.07 2.01 4.47 -2.38 -0.01 2.00 16 34 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.04 7.75 -2.38 -0.02 1.02 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.03 0.86 6.57 -2.39 -0.02 0.84 16 43 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.12 2.48 4.87 -2.39 -0.01 2.47 16 45 H 0.03 1.29 6.57 -2.39 -0.02 1.28 16 46 H 0.07 2.72 5.59 -2.38 -0.01 2.71 16 47 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 48 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 2.91 7.93 -2.39 -0.02 2.89 16 50 H 0.08 2.95 6.99 -2.39 -0.02 2.93 16 51 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -78.98 384.78 2.99 -75.99 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.11 Total: 17.29 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 6.84 Total: 26.59 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -6.05 Total: -122.08 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: 0.51 Total: -42.55 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.81 Total: 44.76 kcal Total: -78.98 2.99 -75.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597272650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.068 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds