Wall clock time and date at job start Fri Apr 10 2020 18:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00161 * 2 1 4 4 C 1.52994 * 109.47364 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47152 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47290 * 180.02562 * 5 4 3 7 7 C 1.34254 * 125.75736 * 124.99907 * 6 5 4 8 8 C 1.38048 * 107.41666 * 179.97438 * 7 6 5 9 9 C 1.47435 * 126.41425 * 179.97438 * 8 7 6 10 10 O 1.21603 * 120.00059 * 325.31389 * 9 8 7 11 11 N 1.34772 * 120.00000 * 145.31458 * 9 8 7 12 12 C 1.46502 * 119.99984 * 4.09001 * 11 9 8 13 13 C 1.50706 * 109.46896 * 94.74917 * 12 11 9 14 14 H 1.07996 * 120.00235 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99934 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99957 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00052 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46760 * 60.00437 * 17 15 13 19 19 H 1.48497 * 109.46998 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47266 * 300.00579 * 17 15 13 21 21 C 1.46497 * 119.99929 * 184.09626 * 11 9 8 22 22 C 1.52997 * 109.47393 * 90.00023 * 21 11 9 23 23 O 1.42897 * 109.47513 * 64.99754 * 22 21 11 24 24 C 1.42900 * 114.00442 * 180.02562 * 23 22 21 25 25 C 1.41284 * 107.17256 * 0.02562 * 8 7 6 26 26 N 1.30453 * 108.02431 * 359.71412 * 25 8 7 27 27 H 1.08995 * 109.47286 * 60.00486 * 1 2 3 28 28 H 1.09008 * 109.46620 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46867 * 299.99750 * 1 2 3 30 30 H 1.09004 * 109.46924 * 59.99572 * 3 2 1 31 31 H 1.09000 * 109.47199 * 300.00626 * 3 2 1 32 32 H 1.09000 * 109.47249 * 299.99875 * 4 3 2 33 33 H 1.08997 * 109.46935 * 60.00484 * 4 3 2 34 34 H 1.09009 * 109.46914 * 299.99865 * 5 4 3 35 35 H 1.08994 * 109.46978 * 59.99544 * 5 4 3 36 36 H 1.07994 * 126.29526 * 359.97438 * 7 6 5 37 37 H 1.09003 * 109.47539 * 214.74820 * 12 11 9 38 38 H 1.08997 * 109.47454 * 334.75281 * 12 11 9 39 39 H 0.96999 * 119.99829 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46975 * 209.99911 * 21 11 9 41 41 H 1.09001 * 109.47225 * 329.99234 * 21 11 9 42 42 H 1.09003 * 109.47474 * 185.00124 * 22 21 11 43 43 H 1.09004 * 109.46794 * 304.99705 * 22 21 11 44 44 H 1.09011 * 109.46625 * 299.99861 * 24 23 22 45 45 H 1.08996 * 109.47203 * 59.99291 * 24 23 22 46 46 H 1.09001 * 109.47431 * 180.02562 * 24 23 22 47 47 H 1.08004 * 125.99443 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4668 -0.0012 7 6 6.4489 3.0285 -0.8939 8 6 7.7358 2.6769 -0.5390 9 6 8.9740 3.0687 -1.2368 10 8 8.9792 3.1847 -2.4473 11 7 10.1003 3.2982 -0.5331 12 6 10.1186 3.0720 0.9143 13 6 10.6445 1.6888 1.1999 14 1 10.9363 1.0431 0.3849 15 6 10.7541 1.2482 2.5017 16 7 10.3993 2.0347 3.4942 17 14 11.4053 -0.4665 2.8557 18 1 12.7832 -0.5936 2.3167 19 1 11.4252 -0.6953 4.3228 20 1 10.5260 -1.4732 2.2089 21 6 11.3062 3.7741 -1.2154 22 6 11.3114 5.3039 -1.2344 23 8 11.4145 5.7966 0.1030 24 6 11.4273 7.2224 0.1979 25 6 7.6440 1.8704 0.6174 26 7 6.3829 1.7569 0.9313 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8575 0.6436 0.8891 33 1 3.8567 0.6440 -0.8909 34 1 3.8358 3.1239 -0.8896 35 1 3.8364 3.1227 0.8904 36 1 6.1629 3.6426 -1.7350 37 1 10.7635 3.8112 1.3895 38 1 9.1070 3.1648 1.3094 39 1 10.4767 1.7248 4.4101 40 1 12.1888 3.4143 -0.6866 41 1 11.3172 3.3979 -2.2384 42 1 12.1613 5.6572 -1.8183 43 1 10.3864 5.6648 -1.6842 44 1 12.2795 7.6157 -0.3564 45 1 10.5046 7.6228 -0.2221 46 1 11.5081 7.5162 1.2445 47 1 8.4730 1.4296 1.1512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599330965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:11 Heat of formation + Delta-G solvation = -44.536004 kcal Electronic energy + Delta-G solvation = -28035.299879 eV Core-core repulsion = 24027.829581 eV Total energy + Delta-G solvation = -4007.470298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.80768 -38.71227 -38.22090 -37.23220 -34.93105 -34.60091 -32.61624 -31.07679 -30.19864 -29.10321 -27.20939 -27.03115 -25.92217 -25.22791 -23.05288 -22.78972 -22.17577 -20.92702 -20.17083 -18.47142 -17.12302 -16.57249 -16.47964 -16.36625 -16.04516 -15.85717 -15.39043 -15.34203 -14.92762 -14.68152 -14.49255 -14.28185 -14.11623 -13.62036 -13.47820 -12.93397 -12.53058 -12.39198 -12.20138 -12.18775 -12.01416 -11.85815 -11.62125 -11.41858 -11.36360 -11.22346 -11.03863 -10.90496 -10.77300 -10.43389 -10.25299 -10.05853 -9.96724 -9.66405 -9.32844 -8.98631 -8.92200 -8.47215 -8.02211 -7.55485 -6.10202 -4.18638 2.12444 2.72079 3.04606 3.31777 3.36645 3.39727 3.51186 3.96544 4.11973 4.27049 4.44579 4.55038 4.76331 4.85525 4.93598 5.03616 5.06849 5.11168 5.19572 5.20458 5.25175 5.36312 5.44017 5.48201 5.58010 5.70582 5.72528 5.77769 5.84663 5.89714 5.92243 6.01420 6.15846 6.21660 6.45844 6.54601 6.85560 6.96922 7.31466 7.37035 7.47808 7.55271 7.71385 7.87849 8.17350 8.23878 8.50534 8.89914 9.16482 9.47894 10.94466 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010193 B = 0.003455 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.360613 B = 8102.913420 C = 9953.610346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.133 4.133 5 C 0.142 3.858 6 N -0.377 5.377 7 C 0.098 3.902 8 C -0.273 4.273 9 C 0.592 3.408 10 O -0.587 6.587 11 N -0.582 5.582 12 C 0.231 3.769 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.881 5.881 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.123 3.877 22 C 0.049 3.951 23 O -0.373 6.373 24 C 0.033 3.967 25 C 0.102 3.898 26 N -0.311 5.311 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.175 0.825 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.266 0.734 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.082 0.918 47 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 5.449 -6.674 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.012 4.012 4 C -0.171 4.171 5 C 0.020 3.980 6 N -0.156 5.156 7 C -0.051 4.051 8 C -0.288 4.288 9 C 0.381 3.619 10 O -0.470 6.470 11 N -0.310 5.310 12 C 0.111 3.889 13 C -0.582 4.582 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.518 5.518 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.001 4.001 22 C -0.029 4.029 23 O -0.292 6.292 24 C -0.064 4.064 25 C -0.084 4.084 26 N -0.130 5.130 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.192 0.808 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.498 4.750 -6.060 15.540 hybrid contribution 0.712 0.012 -0.413 0.823 sum -12.786 4.762 -6.473 15.102 Atomic orbital electron populations 1.22749 0.80936 1.02857 0.99937 1.87907 1.19738 1.27796 1.95408 1.22407 0.93495 0.84939 1.00323 1.21760 0.92882 0.96985 1.05486 1.21425 0.75314 0.97641 1.03658 1.48408 1.06003 1.39706 1.21498 1.22667 0.89709 0.97990 0.94766 1.20282 0.93061 1.12363 1.03088 1.17333 0.82856 0.76085 0.85656 1.90640 1.85925 1.56365 1.14045 1.47937 1.09110 1.62782 1.11191 1.19748 0.99210 0.96603 0.73373 1.21528 1.44356 0.99955 0.92335 0.91982 1.24958 0.95026 0.97651 0.96004 1.69936 1.46338 1.36135 0.99432 0.86637 0.79721 0.84458 0.77222 1.20140 1.21164 1.19905 1.21309 0.89385 0.90631 0.98778 1.23038 0.99520 0.96315 0.84060 1.88076 1.94733 1.19695 1.26673 1.22671 0.99084 0.82423 1.02219 1.25587 0.94779 0.94586 0.93483 1.77251 1.04195 1.18402 1.13172 0.94084 0.89573 0.94006 0.92899 0.93147 0.89156 0.90408 0.88860 0.89686 0.80786 0.93430 0.93605 0.92400 0.89373 0.89403 0.93299 0.93553 0.94790 0.94757 0.89939 0.75857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.33 10.70 -35.23 -0.38 -4.70 16 3 C 0.07 0.60 5.94 37.15 0.22 0.82 16 4 C -0.13 -1.51 5.76 -26.73 -0.15 -1.66 16 5 C 0.14 1.55 6.49 -4.04 -0.03 1.53 16 6 N -0.38 -6.13 3.65 -60.81 -0.22 -6.35 16 7 C 0.10 1.67 11.40 -16.56 -0.19 1.48 16 8 C -0.27 -5.70 5.46 -105.06 -0.57 -6.27 16 9 C 0.59 13.12 7.60 -12.52 -0.10 13.02 16 10 O -0.59 -13.58 16.61 5.28 0.09 -13.49 16 11 N -0.58 -12.78 2.42 -176.33 -0.43 -13.20 16 12 C 0.23 5.63 4.54 -5.19 -0.02 5.61 16 13 C -0.54 -14.02 7.28 -34.44 -0.25 -14.27 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.07 1.78 5.27 -17.82 -0.09 1.69 16 16 N -0.88 -24.23 13.29 55.43 0.74 -23.50 16 17 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.12 2.33 5.86 -4.05 -0.02 2.31 16 22 C 0.05 0.81 6.28 37.16 0.23 1.04 16 23 O -0.37 -6.82 9.46 -35.23 -0.33 -7.15 16 24 C 0.03 0.45 11.01 101.05 1.11 1.56 16 25 C 0.10 2.25 9.55 -16.98 -0.16 2.09 16 26 N -0.31 -6.31 12.34 30.86 0.38 -5.93 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.72 8.06 -51.92 -0.42 0.30 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 37 H 0.05 1.26 7.04 -51.93 -0.37 0.90 16 38 H 0.05 1.18 4.93 -51.93 -0.26 0.93 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 41 H 0.09 1.59 7.37 -51.93 -0.38 1.21 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 45 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.23 5.49 4.60 -52.48 -0.24 5.25 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -32.42 392.86 -5.71 -38.13 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.55 Total: 4.38 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 1.09 Total: 10.30 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.47 Total: -48.98 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.62 Total: -25.35 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.42 -5.71 -38.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599330965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.402 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds