Wall clock time and date at job start Fri Apr 10 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00161 * 2 1 4 4 C 1.52994 * 109.47364 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47152 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47290 * 180.02562 * 5 4 3 7 7 C 1.34254 * 125.75736 * 124.99907 * 6 5 4 8 8 C 1.38048 * 107.41666 * 179.97438 * 7 6 5 9 9 C 1.47435 * 126.41425 * 179.97438 * 8 7 6 10 10 O 1.21603 * 120.00059 * 325.31389 * 9 8 7 11 11 N 1.34772 * 120.00000 * 145.31458 * 9 8 7 12 12 C 1.46502 * 119.99984 * 4.09001 * 11 9 8 13 13 C 1.50706 * 109.46896 * 94.74917 * 12 11 9 14 14 H 1.07996 * 120.00235 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99934 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99957 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00052 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46760 * 60.00437 * 17 15 13 19 19 H 1.48497 * 109.46998 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47266 * 300.00579 * 17 15 13 21 21 C 1.46497 * 119.99929 * 184.09626 * 11 9 8 22 22 C 1.52997 * 109.47393 * 90.00023 * 21 11 9 23 23 O 1.42897 * 109.47513 * 64.99754 * 22 21 11 24 24 C 1.42900 * 114.00442 * 180.02562 * 23 22 21 25 25 C 1.41284 * 107.17256 * 0.02562 * 8 7 6 26 26 N 1.30453 * 108.02431 * 359.71412 * 25 8 7 27 27 H 1.08995 * 109.47286 * 60.00486 * 1 2 3 28 28 H 1.09008 * 109.46620 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46867 * 299.99750 * 1 2 3 30 30 H 1.09004 * 109.46924 * 59.99572 * 3 2 1 31 31 H 1.09000 * 109.47199 * 300.00626 * 3 2 1 32 32 H 1.09000 * 109.47249 * 299.99875 * 4 3 2 33 33 H 1.08997 * 109.46935 * 60.00484 * 4 3 2 34 34 H 1.09009 * 109.46914 * 299.99865 * 5 4 3 35 35 H 1.08994 * 109.46978 * 59.99544 * 5 4 3 36 36 H 1.07994 * 126.29526 * 359.97438 * 7 6 5 37 37 H 1.09003 * 109.47539 * 214.74820 * 12 11 9 38 38 H 1.08997 * 109.47454 * 334.75281 * 12 11 9 39 39 H 0.96999 * 119.99829 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46975 * 209.99911 * 21 11 9 41 41 H 1.09001 * 109.47225 * 329.99234 * 21 11 9 42 42 H 1.09003 * 109.47474 * 185.00124 * 22 21 11 43 43 H 1.09004 * 109.46794 * 304.99705 * 22 21 11 44 44 H 1.09011 * 109.46625 * 299.99861 * 24 23 22 45 45 H 1.08996 * 109.47203 * 59.99291 * 24 23 22 46 46 H 1.09001 * 109.47431 * 180.02562 * 24 23 22 47 47 H 1.08004 * 125.99443 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4668 -0.0012 7 6 6.4489 3.0285 -0.8939 8 6 7.7358 2.6769 -0.5390 9 6 8.9740 3.0687 -1.2368 10 8 8.9792 3.1847 -2.4473 11 7 10.1003 3.2982 -0.5331 12 6 10.1186 3.0720 0.9143 13 6 10.6445 1.6888 1.1999 14 1 10.9363 1.0431 0.3849 15 6 10.7541 1.2482 2.5017 16 7 10.3993 2.0347 3.4942 17 14 11.4053 -0.4665 2.8557 18 1 12.7832 -0.5936 2.3167 19 1 11.4252 -0.6953 4.3228 20 1 10.5260 -1.4732 2.2089 21 6 11.3062 3.7741 -1.2154 22 6 11.3114 5.3039 -1.2344 23 8 11.4145 5.7966 0.1030 24 6 11.4273 7.2224 0.1979 25 6 7.6440 1.8704 0.6174 26 7 6.3829 1.7569 0.9313 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8575 0.6436 0.8891 33 1 3.8567 0.6440 -0.8909 34 1 3.8358 3.1239 -0.8896 35 1 3.8364 3.1227 0.8904 36 1 6.1629 3.6426 -1.7350 37 1 10.7635 3.8112 1.3895 38 1 9.1070 3.1648 1.3094 39 1 10.4767 1.7248 4.4101 40 1 12.1888 3.4143 -0.6866 41 1 11.3172 3.3979 -2.2384 42 1 12.1613 5.6572 -1.8183 43 1 10.3864 5.6648 -1.6842 44 1 12.2795 7.6157 -0.3564 45 1 10.5046 7.6228 -0.2221 46 1 11.5081 7.5162 1.2445 47 1 8.4730 1.4296 1.1512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599330965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:10 Heat of formation + Delta-G solvation = -66.786405 kcal Electronic energy + Delta-G solvation = -28036.264729 eV Core-core repulsion = 24027.829581 eV Total energy + Delta-G solvation = -4008.435148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.28406 -40.31297 -38.96830 -38.59766 -36.64322 -35.70899 -34.55614 -32.32464 -31.70526 -30.54226 -28.87365 -27.99821 -27.11130 -26.16263 -24.86117 -24.31864 -23.19116 -22.40332 -21.50639 -20.04900 -18.62254 -18.31425 -17.59819 -17.41926 -17.22104 -17.06798 -16.77532 -16.59498 -16.23071 -16.11391 -15.94907 -15.56178 -15.32589 -15.03849 -14.78935 -14.44987 -14.19707 -13.81807 -13.40616 -13.26812 -13.21902 -13.13191 -12.83286 -12.74659 -12.71687 -12.70107 -12.45080 -12.21569 -12.07727 -12.06146 -11.84883 -11.67622 -11.63475 -10.78354 -10.62954 -10.59573 -10.47530 -10.32258 -9.57485 -9.28401 -8.13708 -6.28328 0.71572 1.36776 1.45231 1.46352 1.53562 1.53645 2.33559 2.39074 2.61044 2.79169 2.99754 3.15162 3.60983 3.88787 3.92459 4.07735 4.08897 4.20306 4.23121 4.33016 4.35185 4.40094 4.45304 4.47749 4.54060 4.55972 4.56259 4.58897 4.65942 4.71575 4.85958 4.86251 4.90851 4.98977 5.01347 5.12311 5.13570 5.42997 5.66013 5.77096 5.94840 6.05208 6.15270 6.24226 6.34293 6.66837 6.71066 6.90930 7.36829 7.48948 8.90184 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010193 B = 0.003455 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.360613 B = 8102.913420 C = 9953.610346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.068 3.932 4 C -0.127 4.127 5 C 0.131 3.869 6 N -0.361 5.361 7 C 0.126 3.874 8 C -0.313 4.313 9 C 0.589 3.411 10 O -0.600 6.600 11 N -0.587 5.587 12 C 0.254 3.746 13 C -0.544 4.544 14 H 0.053 0.947 15 C 0.028 3.972 16 N -0.911 5.911 17 Si 0.949 3.051 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.116 3.884 22 C 0.057 3.943 23 O -0.410 6.410 24 C 0.028 3.972 25 C 0.083 3.917 26 N -0.332 5.332 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.219 0.781 37 H 0.023 0.977 38 H 0.032 0.968 39 H 0.267 0.733 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.058 0.942 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 6.540 -8.071 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.008 4.008 4 C -0.165 4.165 5 C 0.012 3.988 6 N -0.140 5.140 7 C -0.026 4.026 8 C -0.327 4.327 9 C 0.380 3.620 10 O -0.485 6.485 11 N -0.315 5.315 12 C 0.133 3.867 13 C -0.583 4.583 14 H 0.071 0.929 15 C -0.173 4.173 16 N -0.549 5.549 17 Si 0.774 3.226 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.199 1.199 21 C -0.007 4.007 22 C -0.020 4.020 23 O -0.330 6.330 24 C -0.068 4.068 25 C -0.103 4.103 26 N -0.153 5.153 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.235 0.765 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.220 5.843 -7.455 17.926 hybrid contribution 1.101 -0.295 -0.008 1.140 sum -14.119 5.548 -7.464 16.906 Atomic orbital electron populations 1.22928 0.79132 1.03724 1.01183 1.87855 1.21825 1.29104 1.95705 1.22431 0.91420 0.84671 1.02305 1.21648 0.95007 0.96663 1.03182 1.21984 0.71876 0.98077 1.06874 1.48790 1.07815 1.37582 1.19823 1.23207 0.88214 0.96424 0.94772 1.20361 0.94272 1.14365 1.03750 1.17530 0.83226 0.75704 0.85571 1.90609 1.86218 1.57338 1.14300 1.47932 1.10274 1.63024 1.10257 1.19260 0.97505 0.95113 0.74804 1.21624 1.43976 1.00461 0.92213 0.92863 1.25587 0.95190 1.00731 0.95812 1.70032 1.47508 1.37715 0.99673 0.85747 0.79208 0.80519 0.77101 1.19522 1.20716 1.19884 1.21501 0.87942 0.92701 0.98587 1.22940 1.00747 0.94326 0.84028 1.88024 1.95014 1.22373 1.27566 1.22863 1.00605 0.80221 1.03127 1.25059 0.94870 0.95956 0.94374 1.77142 1.03879 1.19560 1.14699 0.92534 0.89083 0.92979 0.91485 0.90428 0.92425 0.91814 0.84097 0.87976 0.76502 0.95937 0.95052 0.92393 0.90222 0.88659 0.89881 0.93964 0.92337 0.93905 0.89531 0.78976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.43 -8.79 10.70 -148.98 -1.59 -10.38 16 3 C 0.07 1.06 5.94 71.98 0.43 1.49 16 4 C -0.13 -2.67 5.76 30.59 0.18 -2.50 16 5 C 0.13 2.46 6.49 86.38 0.56 3.02 16 6 N -0.36 -11.13 3.65 -346.30 -1.26 -12.39 16 7 C 0.13 4.01 11.40 84.28 0.96 4.97 16 8 C -0.31 -13.10 5.46 -20.15 -0.11 -13.21 16 9 C 0.59 26.38 7.60 86.67 0.66 27.03 16 10 O -0.60 -27.48 16.61 -4.04 -0.07 -27.55 16 11 N -0.59 -26.44 2.42 -830.03 -2.01 -28.44 16 12 C 0.25 12.98 4.54 85.63 0.39 13.37 16 13 C -0.54 -29.19 7.28 25.60 0.19 -29.01 16 14 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 15 C 0.03 1.52 5.27 84.65 0.45 1.97 16 16 N -0.91 -51.70 13.29 21.45 0.28 -51.41 16 17 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C 0.12 4.43 5.86 86.38 0.51 4.94 16 22 C 0.06 1.86 6.28 71.98 0.45 2.31 16 23 O -0.41 -14.93 9.46 -148.98 -1.41 -16.34 16 24 C 0.03 0.73 11.01 113.37 1.25 1.98 16 25 C 0.08 3.81 9.55 85.65 0.82 4.63 16 26 N -0.33 -13.69 12.34 -56.27 -0.69 -14.38 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.14 1.40 8.06 -2.38 -0.02 1.38 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.22 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.02 1.25 7.04 -2.39 -0.02 1.24 16 38 H 0.03 1.71 4.93 -2.39 -0.01 1.70 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.08 3.13 8.07 -2.39 -0.02 3.11 16 41 H 0.10 3.45 7.37 -2.39 -0.02 3.44 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.19 10.04 4.60 -2.91 -0.01 10.02 16 Total: -1.00 -73.61 392.86 4.20 -69.42 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.95 Total: 23.68 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 7.97 Total: 22.56 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -3.68 Total: -106.63 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -3.07 Total: -54.27 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -73.61 4.20 -69.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599330965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.632 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds