Wall clock time and date at job start Fri Apr 10 2020 18:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34233 * 116.99772 * 2 1 4 4 O 1.20820 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99790 * 180.27679 * 3 2 1 6 6 C 1.53005 * 115.55225 * 60.64740 * 5 3 2 7 7 N 1.46495 * 109.46835 * 65.20437 * 6 5 3 8 8 C 1.34777 * 119.99863 * 185.05697 * 7 6 5 9 9 O 1.21584 * 120.00083 * 355.11962 * 8 7 6 10 10 N 1.34773 * 120.00005 * 175.11534 * 8 7 6 11 11 C 1.47079 * 120.88232 * 184.76886 * 10 8 7 12 12 C 1.53697 * 108.27692 * 128.75615 * 11 10 8 13 13 N 1.46897 * 109.25731 * 54.08799 * 12 11 10 14 14 C 1.46899 * 111.00499 * 172.60655 * 13 12 11 15 15 C 1.50705 * 109.46843 * 294.30259 * 14 13 12 16 16 H 1.07996 * 120.00048 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99395 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00334 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99430 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47080 * 59.99987 * 19 17 15 21 21 H 1.48499 * 109.46776 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47267 * 299.99548 * 19 17 15 23 23 C 1.46905 * 111.26682 * 296.75770 * 13 12 11 24 24 C 1.47084 * 120.88420 * 5.05449 * 10 8 7 25 25 C 1.53005 * 117.49806 * 274.97819 * 5 3 2 26 26 C 1.52997 * 117.49742 * 206.31944 * 5 3 2 27 27 H 1.08994 * 109.47065 * 60.00373 * 1 2 3 28 28 H 1.09000 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46675 * 300.00135 * 1 2 3 30 30 H 1.08997 * 109.46730 * 185.20446 * 6 5 3 31 31 H 1.08995 * 109.46815 * 305.20433 * 6 5 3 32 32 H 0.96999 * 120.00480 * 5.04629 * 7 6 5 33 33 H 1.09000 * 109.63213 * 248.52403 * 11 10 8 34 34 H 1.08998 * 109.62939 * 9.10676 * 11 10 8 35 35 H 1.08993 * 109.64783 * 294.07900 * 12 11 10 36 36 H 1.09001 * 109.44198 * 173.96178 * 12 11 10 37 37 H 1.09000 * 109.46402 * 54.29628 * 14 13 12 38 38 H 1.08993 * 109.47158 * 174.29659 * 14 13 12 39 39 H 0.97003 * 119.99405 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.49196 * 303.14229 * 23 13 12 41 41 H 1.08998 * 109.49265 * 183.06528 * 23 13 12 42 42 H 1.09001 * 109.62362 * 350.88839 * 24 10 8 43 43 H 1.08989 * 109.63148 * 111.47027 * 24 10 8 44 44 H 1.09000 * 117.49837 * 359.97438 * 25 5 3 45 45 H 1.08998 * 117.49744 * 145.01731 * 25 5 3 46 46 H 1.08996 * 117.50110 * 214.97568 * 26 5 3 47 47 H 1.08997 * 117.49755 * 359.97438 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0063 6 6 4.2556 0.6364 -1.2139 7 7 3.8993 1.3762 -2.4271 8 6 4.3097 0.9326 -3.6318 9 8 5.0488 -0.0300 -3.7057 10 7 3.9008 1.5560 -4.7545 11 6 4.2511 1.0277 -6.0817 12 6 2.9624 0.9171 -6.9119 13 7 2.2797 2.2177 -6.9223 14 6 1.1374 2.2054 -7.8459 15 6 1.6357 2.0424 -9.2589 16 1 2.6949 1.9570 -9.4515 17 6 0.7391 2.0024 -10.3056 18 7 -0.5508 2.1060 -10.0709 19 14 1.3568 1.8011 -12.0570 20 1 2.1032 0.5227 -12.1748 21 1 0.2019 1.7873 -12.9905 22 1 2.2559 2.9325 -12.3980 23 6 1.8594 2.6097 -5.5704 24 6 3.0977 2.7863 -4.6852 25 6 4.2838 1.1913 1.3425 26 6 4.2107 2.5254 0.5954 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 5.3361 0.6671 -1.0736 31 1 3.9312 -0.3996 -1.3115 32 1 3.3679 2.1852 -2.3634 33 1 4.9497 1.7051 -6.5728 34 1 4.7054 0.0426 -5.9754 35 1 2.3067 0.1655 -6.4725 36 1 3.2124 0.6294 -7.9331 37 1 0.4768 1.3753 -7.5956 38 1 0.5903 3.1441 -7.7595 39 1 -1.1814 2.0782 -10.8075 40 1 1.2189 1.8346 -5.1495 41 1 1.3097 3.5497 -5.6186 42 1 2.7890 2.9644 -3.6551 43 1 3.6875 3.6294 -5.0445 44 1 3.6673 1.0797 2.2344 45 1 5.2469 0.6817 1.3695 46 1 5.1258 2.8929 0.1313 47 1 3.5461 3.2911 0.9954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601594501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:26 Heat of formation + Delta-G solvation = -65.621803 kcal Electronic energy + Delta-G solvation = -28384.939572 eV Core-core repulsion = 24376.554925 eV Total energy + Delta-G solvation = -4008.384647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14540 -40.15439 -38.25473 -37.47981 -36.56038 -34.47852 -34.13987 -32.37009 -30.71367 -28.82460 -28.30975 -26.99159 -25.35959 -24.10115 -23.15739 -23.02571 -22.12242 -20.71967 -20.33738 -19.30413 -18.28149 -17.54342 -17.11559 -16.69065 -16.41436 -16.09286 -15.55669 -15.27078 -14.79291 -14.53847 -14.52077 -14.27637 -13.98527 -13.77004 -13.56634 -13.48289 -13.42666 -12.90913 -12.65169 -12.30217 -12.20694 -12.08694 -11.98637 -11.30971 -11.27857 -11.15378 -11.12451 -10.92541 -10.82860 -10.75230 -10.70677 -10.59726 -10.51227 -10.00341 -9.84860 -9.29429 -9.21541 -8.47923 -8.33186 -7.32405 -6.05832 -4.07741 1.73716 2.23008 2.58070 3.16680 3.28778 3.32549 3.36571 3.39472 3.85807 4.01316 4.21053 4.23640 4.39491 4.42413 4.78898 4.80272 4.90092 5.05647 5.09168 5.21703 5.22965 5.29037 5.34541 5.36180 5.38456 5.41667 5.50106 5.56449 5.66048 5.83573 5.92937 6.01696 6.04636 6.20535 6.33423 6.42346 6.56229 6.67572 7.02834 7.22308 7.28480 7.36411 7.74278 7.97002 8.01664 8.12716 8.47851 8.64514 8.99330 9.56829 11.05001 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.002692 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.225611 B =10399.712911 C =11162.785414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.499 3.501 4 O -0.499 6.499 5 C -0.159 4.159 6 C 0.184 3.816 7 N -0.753 5.753 8 C 0.710 3.290 9 O -0.595 6.595 10 N -0.624 5.624 11 C 0.133 3.867 12 C 0.050 3.950 13 N -0.534 5.534 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.041 3.959 24 C 0.118 3.882 25 C -0.136 4.136 26 C -0.138 4.138 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.397 0.603 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.024 0.976 36 H 0.097 0.903 37 H -0.009 1.009 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.025 0.975 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -1.260 24.365 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.341 3.659 4 O -0.386 6.386 5 C -0.161 4.161 6 C 0.060 3.940 7 N -0.412 5.412 8 C 0.411 3.589 9 O -0.474 6.474 10 N -0.361 5.361 11 C 0.011 3.989 12 C -0.079 4.079 13 N -0.260 5.260 14 C 0.070 3.930 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.089 4.089 24 C -0.005 4.005 25 C -0.174 4.174 26 C -0.175 4.175 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.042 0.958 36 H 0.116 0.884 37 H 0.008 0.992 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.621 -1.347 24.029 25.245 hybrid contribution -1.152 -0.188 -0.692 1.357 sum 6.469 -1.535 23.337 24.265 Atomic orbital electron populations 1.23348 0.75727 1.04094 1.02746 1.86508 1.23713 1.32814 1.83554 1.22368 0.89845 0.81572 0.72077 1.90691 1.66587 1.36420 1.44949 1.21224 0.88173 1.07965 0.98722 1.20537 0.98649 0.95416 0.79423 1.45258 1.59930 1.31023 1.04967 1.15751 0.80460 0.82451 0.80210 1.90890 1.40671 1.29856 1.85978 1.47410 1.55690 1.27653 1.05326 1.21845 0.97383 0.99851 0.79852 1.22457 0.93920 0.90778 1.00714 1.62081 1.30198 1.28039 1.05636 1.19717 0.86485 0.96371 0.90475 1.21107 0.93534 1.49639 0.90561 0.91789 1.24991 0.94794 0.95371 0.99398 1.69950 1.01158 1.50571 1.32128 0.86545 0.78136 0.78763 0.83885 1.20213 1.21381 1.20118 1.22373 0.94739 1.00795 0.90948 1.21772 0.92968 0.86966 0.98838 1.23149 1.01950 1.00301 0.91994 1.23227 1.02371 0.90835 1.01062 0.91508 0.87776 0.91819 0.90146 0.89954 0.76621 0.91076 0.89324 0.95772 0.88443 0.99165 0.95085 0.92827 0.95654 0.90097 0.91397 0.90482 0.87614 0.86594 0.86715 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.68 10.57 -39.27 -0.41 -4.09 16 3 C 0.50 5.38 7.12 36.00 0.26 5.63 16 4 O -0.50 -6.45 16.34 -18.74 -0.31 -6.76 16 5 C -0.16 -1.32 2.04 -155.66 -0.32 -1.64 16 6 C 0.18 1.85 5.51 -4.04 -0.02 1.82 16 7 N -0.75 -9.15 5.37 -65.23 -0.35 -9.50 16 8 C 0.71 11.18 8.31 -86.92 -0.72 10.46 16 9 O -0.60 -11.17 15.83 5.29 0.08 -11.09 16 10 N -0.62 -9.81 3.00 -177.91 -0.53 -10.34 16 11 C 0.13 2.24 6.61 -3.36 -0.02 2.22 16 12 C 0.05 0.98 5.47 -3.46 -0.02 0.97 16 13 N -0.53 -11.21 4.62 -235.47 -1.09 -12.30 16 14 C 0.19 4.97 4.72 -4.97 -0.02 4.95 16 15 C -0.51 -14.05 8.41 -34.44 -0.29 -14.34 16 16 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 19 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 24 C 0.12 1.67 6.59 -3.60 -0.02 1.64 16 25 C -0.14 -0.74 9.93 -26.69 -0.26 -1.00 16 26 C -0.14 -0.87 9.77 -26.69 -0.26 -1.13 16 27 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.40 4.43 5.95 -40.82 -0.24 4.19 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.49 7.09 -51.93 -0.37 1.13 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 37 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 38 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 1.35 7.99 -51.93 -0.41 0.93 16 42 H 0.07 0.79 5.63 -51.93 -0.29 0.50 16 43 H 0.08 1.05 8.14 -51.94 -0.42 0.63 16 44 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.11 0.74 7.92 -51.93 -0.41 0.33 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -33.96 386.40 -9.32 -43.29 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.49 Total: 1.21 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -0.76 Total: 13.10 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -1.24 Total: -57.90 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.64 Total: -21.94 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.96 -9.32 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601594501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.336 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds