Wall clock time and date at job start Fri Apr 10 2020 18:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34233 * 116.99772 * 2 1 4 4 O 1.20820 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99790 * 180.27679 * 3 2 1 6 6 C 1.53005 * 115.55225 * 60.64740 * 5 3 2 7 7 N 1.46495 * 109.46835 * 65.20437 * 6 5 3 8 8 C 1.34777 * 119.99863 * 185.05697 * 7 6 5 9 9 O 1.21584 * 120.00083 * 355.11962 * 8 7 6 10 10 N 1.34773 * 120.00005 * 175.11534 * 8 7 6 11 11 C 1.47079 * 120.88232 * 184.76886 * 10 8 7 12 12 C 1.53697 * 108.27692 * 128.75615 * 11 10 8 13 13 N 1.46897 * 109.25731 * 54.08799 * 12 11 10 14 14 C 1.46899 * 111.00499 * 172.60655 * 13 12 11 15 15 C 1.50705 * 109.46843 * 294.30259 * 14 13 12 16 16 H 1.07996 * 120.00048 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99395 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00334 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99430 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47080 * 59.99987 * 19 17 15 21 21 H 1.48499 * 109.46776 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47267 * 299.99548 * 19 17 15 23 23 C 1.46905 * 111.26682 * 296.75770 * 13 12 11 24 24 C 1.47084 * 120.88420 * 5.05449 * 10 8 7 25 25 C 1.53005 * 117.49806 * 274.97819 * 5 3 2 26 26 C 1.52997 * 117.49742 * 206.31944 * 5 3 2 27 27 H 1.08994 * 109.47065 * 60.00373 * 1 2 3 28 28 H 1.09000 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46675 * 300.00135 * 1 2 3 30 30 H 1.08997 * 109.46730 * 185.20446 * 6 5 3 31 31 H 1.08995 * 109.46815 * 305.20433 * 6 5 3 32 32 H 0.96999 * 120.00480 * 5.04629 * 7 6 5 33 33 H 1.09000 * 109.63213 * 248.52403 * 11 10 8 34 34 H 1.08998 * 109.62939 * 9.10676 * 11 10 8 35 35 H 1.08993 * 109.64783 * 294.07900 * 12 11 10 36 36 H 1.09001 * 109.44198 * 173.96178 * 12 11 10 37 37 H 1.09000 * 109.46402 * 54.29628 * 14 13 12 38 38 H 1.08993 * 109.47158 * 174.29659 * 14 13 12 39 39 H 0.97003 * 119.99405 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.49196 * 303.14229 * 23 13 12 41 41 H 1.08998 * 109.49265 * 183.06528 * 23 13 12 42 42 H 1.09001 * 109.62362 * 350.88839 * 24 10 8 43 43 H 1.08989 * 109.63148 * 111.47027 * 24 10 8 44 44 H 1.09000 * 117.49837 * 359.97438 * 25 5 3 45 45 H 1.08998 * 117.49744 * 145.01731 * 25 5 3 46 46 H 1.08996 * 117.50110 * 214.97568 * 26 5 3 47 47 H 1.08997 * 117.49755 * 359.97438 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0063 6 6 4.2556 0.6364 -1.2139 7 7 3.8993 1.3762 -2.4271 8 6 4.3097 0.9326 -3.6318 9 8 5.0488 -0.0300 -3.7057 10 7 3.9008 1.5560 -4.7545 11 6 4.2511 1.0277 -6.0817 12 6 2.9624 0.9171 -6.9119 13 7 2.2797 2.2177 -6.9223 14 6 1.1374 2.2054 -7.8459 15 6 1.6357 2.0424 -9.2589 16 1 2.6949 1.9570 -9.4515 17 6 0.7391 2.0024 -10.3056 18 7 -0.5508 2.1060 -10.0709 19 14 1.3568 1.8011 -12.0570 20 1 2.1032 0.5227 -12.1748 21 1 0.2019 1.7873 -12.9905 22 1 2.2559 2.9325 -12.3980 23 6 1.8594 2.6097 -5.5704 24 6 3.0977 2.7863 -4.6852 25 6 4.2838 1.1913 1.3425 26 6 4.2107 2.5254 0.5954 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 5.3361 0.6671 -1.0736 31 1 3.9312 -0.3996 -1.3115 32 1 3.3679 2.1852 -2.3634 33 1 4.9497 1.7051 -6.5728 34 1 4.7054 0.0426 -5.9754 35 1 2.3067 0.1655 -6.4725 36 1 3.2124 0.6294 -7.9331 37 1 0.4768 1.3753 -7.5956 38 1 0.5903 3.1441 -7.7595 39 1 -1.1814 2.0782 -10.8075 40 1 1.2189 1.8346 -5.1495 41 1 1.3097 3.5497 -5.6186 42 1 2.7890 2.9644 -3.6551 43 1 3.6875 3.6294 -5.0445 44 1 3.6673 1.0797 2.2344 45 1 5.2469 0.6817 1.3695 46 1 5.1258 2.8929 0.1313 47 1 3.5461 3.2911 0.9954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601594501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:25 Heat of formation + Delta-G solvation = -88.922590 kcal Electronic energy + Delta-G solvation = -28385.949970 eV Core-core repulsion = 24376.554925 eV Total energy + Delta-G solvation = -4009.395045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.96814 -41.35439 -39.30884 -38.59840 -37.40243 -36.01391 -35.28119 -34.33602 -32.10245 -30.22031 -29.26770 -28.13428 -26.96787 -24.96298 -24.46831 -23.95421 -23.47709 -22.19923 -21.13322 -20.50455 -19.42549 -18.54340 -18.38996 -17.88892 -17.49274 -17.30554 -16.79879 -16.65106 -16.07101 -15.94348 -15.53843 -15.44963 -15.33488 -15.23843 -14.86647 -14.63588 -14.23286 -14.09856 -13.81158 -13.64702 -13.49468 -13.10290 -13.01328 -12.78082 -12.57296 -12.49887 -12.41893 -12.33194 -12.20318 -11.93788 -11.90038 -11.77330 -11.52284 -11.49048 -11.33846 -11.15535 -10.62012 -10.32790 -9.64663 -9.08060 -8.21421 -6.31601 0.94952 1.42383 1.45205 1.46628 1.53038 1.59980 2.04611 2.40219 2.51040 2.87680 3.10651 3.19414 3.37109 3.57698 3.62855 3.85191 3.90641 4.02227 4.09432 4.19089 4.21765 4.23549 4.39556 4.49288 4.56542 4.59205 4.61783 4.67580 4.69940 4.76523 4.81535 4.92244 4.92982 4.98760 5.14293 5.14991 5.19263 5.26709 5.34252 5.40417 5.62538 5.83717 6.01418 6.23035 6.54499 6.57096 6.82616 6.83966 7.38318 7.43190 8.89689 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.002692 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.225611 B =10399.712911 C =11162.785414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.496 3.504 4 O -0.528 6.528 5 C -0.176 4.176 6 C 0.186 3.814 7 N -0.740 5.740 8 C 0.708 3.292 9 O -0.626 6.626 10 N -0.629 5.629 11 C 0.146 3.854 12 C 0.056 3.944 13 N -0.536 5.536 14 C 0.209 3.791 15 C -0.524 4.524 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.039 3.961 24 C 0.129 3.871 25 C -0.115 4.115 26 C -0.130 4.130 27 H 0.053 0.947 28 H 0.128 0.872 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.403 0.597 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.008 0.992 36 H 0.083 0.917 37 H -0.043 1.043 38 H 0.009 0.991 39 H 0.264 0.736 40 H 0.014 0.986 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.138 0.862 46 H 0.129 0.871 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.077 -0.849 25.523 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.340 3.660 4 O -0.417 6.417 5 C -0.178 4.178 6 C 0.062 3.938 7 N -0.399 5.399 8 C 0.410 3.590 9 O -0.508 6.508 10 N -0.365 5.365 11 C 0.023 3.977 12 C -0.073 4.073 13 N -0.260 5.260 14 C 0.083 3.917 15 C -0.562 4.562 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.576 5.576 19 Si 0.794 3.206 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.091 4.091 24 C 0.006 3.994 25 C -0.152 4.152 26 C -0.167 4.167 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.241 0.759 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.026 0.974 36 H 0.101 0.899 37 H -0.026 1.026 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.156 0.844 46 H 0.147 0.853 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.517 -0.926 25.239 26.990 hybrid contribution -1.805 -0.340 -0.953 2.070 sum 7.712 -1.266 24.286 25.512 Atomic orbital electron populations 1.23544 0.74831 1.05647 1.02498 1.86512 1.24796 1.32975 1.83316 1.22891 0.90851 0.81157 0.71121 1.90671 1.67445 1.37160 1.46390 1.21178 0.86587 1.10348 0.99700 1.20622 0.99630 0.94518 0.79013 1.45237 1.59026 1.31047 1.04549 1.15863 0.80273 0.82008 0.80885 1.90867 1.42190 1.31204 1.86508 1.47421 1.55929 1.28125 1.05055 1.21620 0.95562 1.00376 0.80176 1.22394 0.94845 0.89607 1.00465 1.62011 1.28232 1.28746 1.07047 1.19368 0.87238 0.93749 0.91319 1.21440 0.93780 1.49426 0.91604 0.91451 1.25917 0.94869 0.94850 1.03984 1.70082 1.02473 1.51521 1.33525 0.85433 0.77709 0.79193 0.78284 1.19256 1.21056 1.19099 1.22498 0.96562 1.00545 0.89454 1.21787 0.91249 0.86661 0.99734 1.23348 1.02280 0.99214 0.90348 1.23319 1.02292 0.90573 1.00541 0.92783 0.85424 0.91048 0.88621 0.91464 0.75928 0.89960 0.89318 0.97401 0.89905 1.02556 0.97244 0.92694 0.96819 0.89425 0.88433 0.89012 0.86882 0.84420 0.85283 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -7.35 10.57 -51.45 -0.54 -7.89 16 3 C 0.50 10.23 7.12 71.24 0.51 10.73 16 4 O -0.53 -13.34 16.34 21.98 0.36 -12.98 16 5 C -0.18 -2.58 2.04 -52.93 -0.11 -2.69 16 6 C 0.19 3.39 5.51 86.38 0.48 3.86 16 7 N -0.74 -16.69 5.37 -478.55 -2.57 -19.27 16 8 C 0.71 21.33 8.31 179.06 1.49 22.82 16 9 O -0.63 -22.89 15.83 -3.98 -0.06 -22.95 16 10 N -0.63 -18.93 3.00 -835.06 -2.51 -21.44 16 11 C 0.15 4.79 6.61 86.50 0.57 5.37 16 12 C 0.06 2.22 5.47 86.54 0.47 2.70 16 13 N -0.54 -22.77 4.62 -898.88 -4.15 -26.92 16 14 C 0.21 11.11 4.72 85.56 0.40 11.51 16 15 C -0.52 -29.38 8.41 25.60 0.22 -29.16 16 16 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.94 -56.30 13.29 21.45 0.28 -56.02 16 19 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.04 1.33 5.62 86.38 0.49 1.82 16 24 C 0.13 3.39 6.59 86.35 0.57 3.96 16 25 C -0.11 -0.89 9.93 30.62 0.30 -0.59 16 26 C -0.13 -1.29 9.77 30.62 0.30 -0.99 16 27 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 28 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.40 8.13 5.95 -92.71 -0.55 7.58 16 33 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.09 2.95 7.09 -2.39 -0.02 2.93 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.08 3.50 6.67 -2.39 -0.02 3.48 16 37 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 38 H 0.01 0.54 7.97 -2.39 -0.02 0.52 16 39 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.09 2.90 7.99 -2.39 -0.02 2.88 16 42 H 0.10 2.01 5.63 -2.39 -0.01 2.00 16 43 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.10 1.20 7.92 -2.39 -0.02 1.18 16 Total: -1.00 -74.67 386.40 0.60 -74.07 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.42 Total: 15.81 kcal Atomic # 6 Polarization: 24.20 SS G_CDS: 7.34 Total: 31.54 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -8.95 Total: -123.64 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.25 Total: -43.82 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -74.67 0.60 -74.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601594501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.849 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds