Wall clock time and date at job start Fri Apr 10 2020 18:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47571 * 2 1 4 4 C 1.52993 * 109.47212 * 239.99245 * 2 1 3 5 5 C 1.50701 * 109.46783 * 119.99511 * 2 1 3 6 6 O 1.21288 * 120.00292 * 359.97438 * 5 2 1 7 7 N 1.34777 * 120.00115 * 179.97438 * 5 2 1 8 8 C 1.46500 * 120.00376 * 180.02562 * 7 5 2 9 9 C 1.52997 * 109.47473 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47074 * 120.88261 * 359.72571 * 12 10 9 14 14 C 1.53695 * 108.27576 * 128.74910 * 13 12 10 15 15 N 1.46904 * 109.25420 * 54.08473 * 14 13 12 16 16 C 1.46897 * 110.99901 * 172.60509 * 15 14 13 17 17 C 1.50703 * 109.47428 * 294.29982 * 16 15 14 18 18 H 1.08006 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47103 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.47379 * 210.00314 * 21 19 17 24 24 H 1.48497 * 109.46980 * 330.00281 * 21 19 17 25 25 C 1.46897 * 111.26792 * 296.75440 * 15 14 13 26 26 C 1.47075 * 120.87669 * 180.02562 * 12 10 9 27 27 H 1.09001 * 109.46962 * 300.00479 * 1 2 3 28 28 H 1.08996 * 109.46524 * 60.00315 * 1 2 3 29 29 H 1.08992 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47346 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46785 * 299.99714 * 3 2 1 32 32 H 1.09001 * 109.47364 * 59.99212 * 3 2 1 33 33 H 1.09002 * 109.47722 * 300.00509 * 4 2 1 34 34 H 1.09004 * 109.46862 * 60.00459 * 4 2 1 35 35 H 1.09000 * 109.47250 * 180.02562 * 4 2 1 36 36 H 0.97004 * 120.00228 * 0.02562 * 7 5 2 37 37 H 1.09002 * 109.47129 * 59.99747 * 8 7 5 38 38 H 1.08998 * 109.46845 * 300.00553 * 8 7 5 39 39 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 40 40 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 41 41 H 1.08994 * 109.63016 * 248.52290 * 13 12 10 42 42 H 1.09001 * 109.62513 * 9.10199 * 13 12 10 43 43 H 1.08997 * 109.65385 * 294.08176 * 14 13 12 44 44 H 1.08999 * 109.42153 * 173.94686 * 14 13 12 45 45 H 1.08994 * 109.47420 * 54.30050 * 16 15 14 46 46 H 1.08997 * 109.47407 * 174.29955 * 16 15 14 47 47 H 0.96998 * 120.00461 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.49120 * 303.14081 * 25 15 14 49 49 H 1.09003 * 109.48945 * 183.06528 * 25 15 14 50 50 H 1.09003 * 109.63301 * 350.89825 * 26 12 10 51 51 H 1.09003 * 109.62726 * 111.48107 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2306 6 8 1.2441 -1.1708 2.0292 7 7 3.3574 -0.8339 1.4437 8 6 3.8457 -1.5249 2.6396 9 6 5.3756 -1.5249 2.6398 10 6 5.8779 -2.2352 3.8704 11 8 5.0897 -2.6964 4.6684 12 7 7.2030 -2.3587 4.0835 13 6 8.1759 -1.8129 3.1250 14 6 9.1811 -0.9458 3.8994 15 7 9.7631 -1.7374 4.9916 16 6 10.8549 -1.0059 5.6480 17 6 11.9944 -0.8274 4.6781 18 1 11.9153 -1.2180 3.6743 19 6 13.1375 -0.1647 5.0719 20 7 13.2337 0.3113 6.2941 21 14 14.5497 0.0571 3.8694 22 1 14.3689 1.3279 3.1225 23 1 15.8330 0.0998 4.6153 24 1 14.5698 -1.0798 2.9144 25 6 8.7379 -2.1375 5.9646 26 6 7.7144 -3.0485 5.2775 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6769 1.9562 -0.8901 32 1 1.6768 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6768 -0.2076 -2.1391 35 1 3.1301 -0.7218 -1.2489 36 1 3.9878 -0.4654 0.8052 37 1 3.4820 -2.5525 2.6395 38 1 3.4825 -1.0112 3.5297 39 1 5.7390 -0.4972 2.6401 40 1 5.7390 -2.0384 1.7496 41 1 8.6988 -2.6303 2.6285 42 1 7.6579 -1.2028 2.3849 43 1 8.6722 -0.0750 4.3125 44 1 9.9728 -0.6191 3.2252 45 1 10.4954 -0.0286 5.9700 46 1 11.2003 -1.5695 6.5147 47 1 14.0380 0.7772 6.5712 48 1 8.2351 -1.2500 6.3489 49 1 9.2081 -2.6750 6.7881 50 1 6.8913 -3.2557 5.9614 51 1 8.1940 -3.9822 4.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602206963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:38 Heat of formation + Delta-G solvation = -81.322823 kcal Electronic energy + Delta-G solvation = -27899.403942 eV Core-core repulsion = 24026.171543 eV Total energy + Delta-G solvation = -3873.232400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53421 -39.99051 -37.67752 -36.05240 -35.41580 -34.48238 -32.53882 -31.57016 -30.40911 -28.30399 -27.81244 -27.52074 -25.84972 -24.62332 -23.31973 -22.52975 -21.88993 -20.64818 -19.77099 -18.54451 -17.35093 -17.07519 -16.44527 -16.24266 -16.01493 -15.57408 -15.36798 -14.84122 -14.52101 -14.47505 -14.39536 -14.20484 -13.93978 -13.68945 -13.49865 -13.39368 -12.79745 -12.79312 -12.61471 -12.48634 -12.29574 -12.14226 -12.07337 -11.88946 -11.71651 -11.37810 -11.35560 -11.35323 -11.12392 -11.02064 -10.82005 -10.68458 -10.59679 -10.00873 -9.94760 -9.71663 -9.34497 -9.32707 -8.58039 -8.49706 -7.39951 -6.11456 -4.13973 2.40090 2.60248 2.68614 3.19500 3.24699 3.31992 3.35160 4.18170 4.30643 4.33517 4.43761 4.47258 4.55066 4.71384 4.79484 4.81617 5.08780 5.09404 5.17133 5.22374 5.26043 5.26198 5.32480 5.38207 5.45083 5.45992 5.48723 5.57396 5.62069 5.62902 5.70077 5.77002 5.79524 5.81358 5.90670 5.97314 6.13507 6.22500 6.37178 6.38318 6.59704 7.15671 7.18672 7.21544 7.45712 7.68051 7.95222 7.96429 8.05612 8.15991 8.40853 8.93021 9.50768 10.99257 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.002156 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.355331 B =12983.999299 C =14041.716867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.521 3.479 6 O -0.535 6.535 7 N -0.731 5.731 8 C 0.135 3.865 9 C -0.153 4.153 10 C 0.518 3.482 11 O -0.547 6.547 12 N -0.607 5.607 13 C 0.108 3.892 14 C 0.049 3.951 15 N -0.536 5.536 16 C 0.193 3.807 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.041 3.959 26 C 0.118 3.882 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.025 0.975 44 H 0.098 0.902 45 H -0.009 1.009 46 H 0.032 0.968 47 H 0.262 0.738 48 H 0.027 0.973 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.444 0.018 -15.274 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.198 4.198 5 C 0.307 3.693 6 O -0.411 6.411 7 N -0.383 5.383 8 C 0.011 3.989 9 C -0.193 4.193 10 C 0.305 3.695 11 O -0.425 6.425 12 N -0.340 5.340 13 C -0.015 4.015 14 C -0.080 4.080 15 N -0.261 5.261 16 C 0.068 3.932 17 C -0.549 4.549 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.089 4.089 26 C -0.005 4.005 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.116 0.884 45 H 0.009 0.991 46 H 0.050 0.950 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.095 -0.902 -14.318 24.691 hybrid contribution 1.131 1.184 -0.456 1.700 sum -18.964 0.282 -14.774 24.041 Atomic orbital electron populations 1.21664 0.91874 1.02921 1.02103 1.20835 0.98187 0.96466 0.93560 1.21878 1.01248 0.93694 1.03061 1.21874 1.01214 1.00704 0.96037 1.20586 0.81983 0.79421 0.87310 1.90725 1.55276 1.48175 1.46926 1.46017 1.07334 1.59283 1.25694 1.21038 0.91590 0.98553 0.87710 1.21829 0.96433 1.02853 0.98206 1.20241 0.82076 0.79975 0.87219 1.90713 1.54785 1.49608 1.47397 1.48234 1.05145 1.56431 1.24203 1.22137 0.90106 0.98125 0.91124 1.22417 0.96605 0.93416 0.95544 1.62079 1.09245 1.43993 1.10765 1.19733 0.87405 0.91270 0.94754 1.21118 0.99669 1.35399 0.98717 0.91810 1.25004 0.98626 0.95633 0.95357 1.69952 1.28406 1.37919 1.17309 0.86491 0.81551 0.78434 0.80889 1.20734 1.21237 1.19746 1.22418 0.93053 0.97944 0.95451 1.21779 0.96806 0.95329 0.86546 0.91881 0.91980 0.91899 0.92051 0.91235 0.91929 0.91972 0.91237 0.92076 0.76659 0.90536 0.90543 0.88141 0.88197 0.90415 0.90224 0.95660 0.88427 0.99098 0.94975 0.92821 0.95519 0.89998 0.89337 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 7.76 37.16 0.29 -0.65 16 2 C -0.09 -0.61 0.87 -155.66 -0.14 -0.74 16 3 C -0.14 -0.75 8.37 37.16 0.31 -0.44 16 4 C -0.14 -0.71 8.37 37.15 0.31 -0.40 16 5 C 0.52 5.38 6.48 -10.98 -0.07 5.31 16 6 O -0.54 -7.97 15.98 5.55 0.09 -7.88 16 7 N -0.73 -6.09 5.34 -60.29 -0.32 -6.41 16 8 C 0.13 1.43 4.96 -4.04 -0.02 1.41 16 9 C -0.15 -1.38 4.18 -27.88 -0.12 -1.50 16 10 C 0.52 7.04 7.71 -10.98 -0.08 6.95 16 11 O -0.55 -9.39 15.43 5.56 0.09 -9.31 16 12 N -0.61 -8.43 3.00 -172.16 -0.52 -8.95 16 13 C 0.11 1.36 6.53 -3.37 -0.02 1.34 16 14 C 0.05 0.83 5.47 -3.46 -0.02 0.82 16 15 N -0.54 -10.66 4.62 -235.44 -1.09 -11.75 16 16 C 0.19 4.78 4.72 -4.98 -0.02 4.75 16 17 C -0.51 -13.51 8.41 -34.44 -0.29 -13.80 16 18 H 0.06 1.64 7.13 -52.48 -0.37 1.27 16 19 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 20 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 21 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 C 0.04 0.70 5.62 -3.68 -0.02 0.68 16 26 C 0.12 1.77 6.60 -3.58 -0.02 1.74 16 27 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.10 16 30 H 0.06 0.26 7.57 -51.93 -0.39 -0.13 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.24 7.56 -51.93 -0.39 -0.15 16 36 H 0.40 2.09 7.31 -40.82 -0.30 1.79 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.10 0.75 7.67 -51.93 -0.40 0.36 16 40 H 0.10 0.67 7.99 -51.93 -0.41 0.26 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.72 6.02 -51.93 -0.31 0.41 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 1.75 6.67 -51.93 -0.35 1.40 16 45 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 46 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 1.39 7.99 -51.93 -0.41 0.97 16 50 H 0.09 1.34 7.06 -51.93 -0.37 0.97 16 51 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 403.08 15.07 6.07 6.07 Total: -1.00 -33.71 403.08 -9.14 -42.85 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -9.17 Total: -2.07 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.01 Total: 6.88 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -1.19 Total: -52.20 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.17 Total: -17.19 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.71 -9.14 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.470 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds