Wall clock time and date at job start Fri Apr 10 2020 18:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00295 * 2 1 4 4 H 1.48496 * 109.47389 * 240.00175 * 3 2 1 5 5 H 1.48503 * 109.46894 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46870 * 120.00020 * 3 2 1 7 7 C 1.37877 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00163 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47313 * 175.03636 * 9 7 2 11 11 C 1.46907 * 110.99962 * 295.08280 * 10 9 7 12 12 C 1.53236 * 109.33884 * 187.25572 * 11 10 9 13 13 N 1.47082 * 108.52178 * 306.16742 * 12 11 10 14 14 C 1.34779 * 120.88323 * 231.18883 * 13 12 11 15 15 O 1.21585 * 119.99594 * 5.24212 * 14 13 12 16 16 N 1.34779 * 119.99934 * 185.24408 * 14 13 12 17 17 C 1.46493 * 119.99997 * 175.02364 * 16 14 13 18 18 H 1.09004 * 110.01444 * 326.39004 * 17 16 14 19 19 C 1.54266 * 110.03473 * 87.83024 * 17 16 14 20 20 C 1.54891 * 104.19382 * 142.89304 * 19 17 16 21 21 C 1.54884 * 102.75058 * 322.06101 * 20 19 17 22 22 C 1.53876 * 110.03354 * 205.00036 * 17 16 14 23 23 H 1.09003 * 110.03387 * 121.38075 * 22 17 16 24 24 C 1.52996 * 110.03013 * 0.02562 * 22 17 16 25 25 C 1.52999 * 109.47234 * 175.00074 * 24 22 17 26 26 O 1.42895 * 109.47382 * 179.97438 * 25 24 22 27 27 C 1.47076 * 118.23541 * 51.46452 * 13 12 11 28 28 C 1.46898 * 111.00102 * 59.38630 * 10 9 7 29 29 H 0.97001 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46674 * 55.03530 * 9 7 2 31 31 H 1.09002 * 109.47061 * 295.03635 * 9 7 2 32 32 H 1.09001 * 109.49165 * 67.29257 * 11 10 9 33 33 H 1.08995 * 109.51209 * 307.22939 * 11 10 9 34 34 H 1.09004 * 109.62990 * 186.46278 * 12 11 10 35 35 H 1.08996 * 109.79234 * 65.97988 * 12 11 10 36 36 H 0.96996 * 119.99574 * 355.02467 * 16 14 13 37 37 H 1.08997 * 110.48901 * 261.57197 * 19 17 16 38 38 H 1.09003 * 110.48540 * 24.08702 * 19 17 16 39 39 H 1.09002 * 110.75514 * 80.37620 * 20 19 17 40 40 H 1.09000 * 110.75199 * 203.56077 * 20 19 17 41 41 H 1.09004 * 110.49005 * 279.26230 * 21 20 19 42 42 H 1.09000 * 110.48578 * 156.61869 * 21 20 19 43 43 H 1.09003 * 109.47009 * 295.00131 * 24 22 17 44 44 H 1.08998 * 109.47334 * 54.99984 * 24 22 17 45 45 H 1.09003 * 109.47169 * 299.99958 * 25 24 22 46 46 H 1.08998 * 109.47034 * 59.99726 * 25 24 22 47 47 H 0.96702 * 114.00162 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.63283 * 68.24393 * 27 13 12 49 49 H 1.08999 * 109.63318 * 188.83240 * 27 13 12 50 50 H 1.08997 * 109.49411 * 292.70388 * 28 10 9 51 51 H 1.08991 * 109.49449 * 52.78832 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2010 -3.6131 -0.1210 11 6 2.8892 -3.5801 -1.4185 12 6 3.7312 -4.8503 -1.5787 13 7 4.6144 -4.9760 -0.4093 14 6 5.9391 -5.1731 -0.5608 15 8 6.4333 -5.1542 -1.6715 16 7 6.7158 -5.3913 0.5189 17 6 8.1345 -5.7135 0.3476 18 1 8.2774 -6.2965 -0.5623 19 6 8.9668 -4.4163 0.2814 20 6 10.2746 -4.7654 1.0345 21 6 9.7721 -5.6577 2.1965 22 6 8.6466 -6.5028 1.5652 23 1 9.0381 -7.4688 1.2462 24 6 7.5135 -6.7044 2.5732 25 6 8.0015 -7.5949 3.7177 26 8 6.9434 -7.7828 4.6595 27 6 4.0128 -4.8869 0.9299 28 6 3.1604 -3.6094 0.9914 29 1 -0.4850 0.8400 0.0004 30 1 0.5590 -2.5191 -0.8425 31 1 0.6930 -2.5966 0.9308 32 1 3.5380 -2.7054 -1.4639 33 1 2.1525 -3.5285 -2.2201 34 1 4.3321 -4.7794 -2.4853 35 1 3.0781 -5.7208 -1.6396 36 1 6.3353 -5.3349 1.4093 37 1 9.1816 -4.1532 -0.7543 38 1 8.4429 -3.6010 0.7804 39 1 10.9560 -5.3193 0.3888 40 1 10.7534 -3.8633 1.4155 41 1 9.3793 -5.0435 3.0069 42 1 10.5746 -6.3005 2.5583 43 1 7.2049 -5.7377 2.9712 44 1 6.6671 -7.1804 2.0781 45 1 8.3100 -8.5616 3.3197 46 1 8.8479 -7.1190 4.2128 47 1 7.1824 -8.3385 5.4140 48 1 3.3837 -5.7592 1.1075 49 1 4.7998 -4.8401 1.6825 50 1 3.8055 -2.7343 0.9124 51 1 2.6202 -3.5793 1.9375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602300520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:02 Heat of formation + Delta-G solvation = -72.691430 kcal Electronic energy + Delta-G solvation = -29245.383754 eV Core-core repulsion = 25372.525639 eV Total energy + Delta-G solvation = -3872.858115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54351 -38.99626 -37.44771 -36.89805 -34.40075 -33.64130 -32.37492 -32.24752 -30.54884 -28.46103 -27.31793 -27.02241 -25.19098 -23.26141 -22.98615 -22.44494 -21.05152 -20.76951 -19.47344 -19.18791 -18.02420 -17.53846 -16.33159 -16.27006 -15.96350 -15.39816 -15.35411 -14.99012 -14.73361 -14.43842 -14.34641 -14.01770 -13.77625 -13.63660 -13.54763 -13.31275 -12.81063 -12.43060 -12.22715 -12.07821 -11.94232 -11.74457 -11.29473 -11.14047 -11.12962 -11.07678 -11.02768 -10.97745 -10.94493 -10.78546 -10.67820 -10.55184 -10.28718 -10.21913 -9.95555 -9.80754 -9.61709 -9.01853 -8.45768 -8.23709 -7.23538 -6.05645 -4.15084 2.83925 3.27229 3.32220 3.35156 3.40991 3.76007 4.06416 4.22589 4.30892 4.38622 4.63652 4.75041 4.84500 4.90943 5.05221 5.14383 5.17474 5.24371 5.27715 5.29328 5.35080 5.37445 5.45140 5.51183 5.56568 5.59454 5.69178 5.75836 5.78022 5.82165 5.91955 5.98262 6.04939 6.06291 6.14592 6.17896 6.44358 6.62233 6.63526 6.76299 6.78971 7.17563 7.22224 7.27806 7.48374 7.85956 7.97287 8.14096 8.20153 8.25820 8.80700 8.94685 9.52245 10.99431 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.003060 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.909568 B = 9146.976180 C = 9346.781434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.539 5.539 11 C 0.050 3.950 12 C 0.133 3.867 13 N -0.623 5.623 14 C 0.706 3.294 15 O -0.598 6.598 16 N -0.747 5.747 17 C 0.167 3.833 18 H 0.090 0.910 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.096 4.096 23 H 0.083 0.917 24 C -0.120 4.120 25 C 0.077 3.923 26 O -0.574 6.574 27 C 0.116 3.884 28 C 0.050 3.950 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.397 0.603 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.379 0.621 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.043 0.957 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.643 -15.791 7.186 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.079 4.079 12 C 0.010 3.990 13 N -0.360 5.360 14 C 0.408 3.592 15 O -0.477 6.477 16 N -0.407 5.407 17 C 0.061 3.939 18 H 0.108 0.892 19 C -0.175 4.175 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.116 4.116 23 H 0.102 0.898 24 C -0.158 4.158 25 C 0.000 4.000 26 O -0.379 6.379 27 C -0.008 4.008 28 C -0.079 4.079 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.226 0.774 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.061 0.939 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.215 -15.732 5.959 24.795 hybrid contribution 0.976 1.586 0.869 2.055 sum 19.191 -14.146 6.828 24.800 Atomic orbital electron populations 1.69925 1.05990 1.27002 1.49936 1.24945 0.94756 0.99118 0.94816 0.86716 0.79709 0.83309 0.78654 1.20250 1.21129 1.20300 1.21710 0.93237 0.92142 1.52008 0.92669 1.19760 0.90717 0.85315 0.97955 1.62478 1.16460 1.46925 1.00502 1.22256 0.96756 0.95444 0.93472 1.21701 0.91258 0.98417 0.87604 1.47352 1.05110 1.75498 1.08072 1.15877 0.81103 0.77710 0.84512 1.90867 1.73132 1.59615 1.24103 1.45664 1.09773 1.76815 1.08409 1.21383 0.79182 0.95358 0.97982 0.89155 1.22828 0.95522 0.97831 1.01311 1.22457 0.97205 0.99570 0.96963 1.22491 0.97259 0.97980 0.98099 1.21995 0.95446 0.99485 0.94630 0.89820 1.21612 0.98902 1.00335 0.94903 1.22186 0.89362 0.98353 0.90144 1.86502 1.39869 1.74251 1.37311 1.21928 0.96218 0.99832 0.82827 1.22303 0.94637 0.94775 0.96210 0.92703 0.94625 0.95259 0.93986 0.90400 0.89465 0.91664 0.76274 0.90933 0.91092 0.91318 0.91340 0.91161 0.91456 0.90916 0.90405 0.93741 0.93539 0.77415 0.91034 0.91572 0.93893 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.55 -15.05 7.76 -34.44 -0.27 -15.32 16 8 H 0.06 1.51 5.88 -52.48 -0.31 1.21 16 9 C 0.19 4.74 5.11 -4.98 -0.03 4.72 16 10 N -0.54 -11.25 4.83 -235.47 -1.14 -12.39 16 11 C 0.05 0.99 5.25 -3.70 -0.02 0.97 16 12 C 0.13 2.26 6.61 -3.60 -0.02 2.24 16 13 N -0.62 -10.18 3.00 -177.90 -0.53 -10.72 16 14 C 0.71 11.68 8.30 -86.91 -0.72 10.95 16 15 O -0.60 -11.78 15.50 5.29 0.08 -11.70 16 16 N -0.75 -9.42 4.30 -57.58 -0.25 -9.67 16 17 C 0.17 1.79 3.19 -66.82 -0.21 1.58 16 18 H 0.09 1.10 7.64 -51.93 -0.40 0.71 16 19 C -0.14 -1.44 6.53 -25.07 -0.16 -1.60 16 20 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 21 C -0.12 -0.81 5.53 -25.08 -0.14 -0.95 16 22 C -0.10 -0.74 2.93 -89.50 -0.26 -1.00 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 24 C -0.12 -0.97 3.58 -26.73 -0.10 -1.07 16 25 C 0.08 0.53 6.90 37.16 0.26 0.79 16 26 O -0.57 -4.73 13.66 -35.23 -0.48 -5.21 16 27 C 0.12 1.71 6.57 -3.36 -0.02 1.68 16 28 C 0.05 0.93 5.17 -3.46 -0.02 0.92 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.94 7.11 -51.93 -0.37 0.57 16 33 H 0.08 1.51 8.05 -51.93 -0.42 1.10 16 34 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.40 4.46 3.43 -40.82 -0.14 4.32 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.49 7.76 -51.93 -0.40 0.09 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.63 7.10 -51.93 -0.37 0.27 16 44 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16 45 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.05 0.27 7.51 -51.93 -0.39 -0.12 16 47 H 0.38 1.40 9.12 45.56 0.42 1.82 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.07 0.81 5.74 -51.93 -0.30 0.52 16 50 H 0.04 0.90 6.61 -51.93 -0.34 0.55 16 51 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -32.85 387.48 -10.72 -43.56 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.97 Total: 4.49 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.98 Total: 4.56 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -1.18 Total: -58.04 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.40 Total: -16.91 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.85 -10.72 -43.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602300520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.131 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds