Wall clock time and date at job start Fri Apr 10 2020 18:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00295 * 2 1 4 4 H 1.48496 * 109.47389 * 240.00175 * 3 2 1 5 5 H 1.48503 * 109.46894 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46870 * 120.00020 * 3 2 1 7 7 C 1.37877 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00163 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47313 * 175.03636 * 9 7 2 11 11 C 1.46907 * 110.99962 * 295.08280 * 10 9 7 12 12 C 1.53236 * 109.33884 * 187.25572 * 11 10 9 13 13 N 1.47082 * 108.52178 * 306.16742 * 12 11 10 14 14 C 1.34779 * 120.88323 * 231.18883 * 13 12 11 15 15 O 1.21585 * 119.99594 * 5.24212 * 14 13 12 16 16 N 1.34779 * 119.99934 * 185.24408 * 14 13 12 17 17 C 1.46493 * 119.99997 * 175.02364 * 16 14 13 18 18 H 1.09004 * 110.01444 * 326.39004 * 17 16 14 19 19 C 1.54266 * 110.03473 * 87.83024 * 17 16 14 20 20 C 1.54891 * 104.19382 * 142.89304 * 19 17 16 21 21 C 1.54884 * 102.75058 * 322.06101 * 20 19 17 22 22 C 1.53876 * 110.03354 * 205.00036 * 17 16 14 23 23 H 1.09003 * 110.03387 * 121.38075 * 22 17 16 24 24 C 1.52996 * 110.03013 * 0.02562 * 22 17 16 25 25 C 1.52999 * 109.47234 * 175.00074 * 24 22 17 26 26 O 1.42895 * 109.47382 * 179.97438 * 25 24 22 27 27 C 1.47076 * 118.23541 * 51.46452 * 13 12 11 28 28 C 1.46898 * 111.00102 * 59.38630 * 10 9 7 29 29 H 0.97001 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46674 * 55.03530 * 9 7 2 31 31 H 1.09002 * 109.47061 * 295.03635 * 9 7 2 32 32 H 1.09001 * 109.49165 * 67.29257 * 11 10 9 33 33 H 1.08995 * 109.51209 * 307.22939 * 11 10 9 34 34 H 1.09004 * 109.62990 * 186.46278 * 12 11 10 35 35 H 1.08996 * 109.79234 * 65.97988 * 12 11 10 36 36 H 0.96996 * 119.99574 * 355.02467 * 16 14 13 37 37 H 1.08997 * 110.48901 * 261.57197 * 19 17 16 38 38 H 1.09003 * 110.48540 * 24.08702 * 19 17 16 39 39 H 1.09002 * 110.75514 * 80.37620 * 20 19 17 40 40 H 1.09000 * 110.75199 * 203.56077 * 20 19 17 41 41 H 1.09004 * 110.49005 * 279.26230 * 21 20 19 42 42 H 1.09000 * 110.48578 * 156.61869 * 21 20 19 43 43 H 1.09003 * 109.47009 * 295.00131 * 24 22 17 44 44 H 1.08998 * 109.47334 * 54.99984 * 24 22 17 45 45 H 1.09003 * 109.47169 * 299.99958 * 25 24 22 46 46 H 1.08998 * 109.47034 * 59.99726 * 25 24 22 47 47 H 0.96702 * 114.00162 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.63283 * 68.24393 * 27 13 12 49 49 H 1.08999 * 109.63318 * 188.83240 * 27 13 12 50 50 H 1.08997 * 109.49411 * 292.70388 * 28 10 9 51 51 H 1.08991 * 109.49449 * 52.78832 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2010 -3.6131 -0.1210 11 6 2.8892 -3.5801 -1.4185 12 6 3.7312 -4.8503 -1.5787 13 7 4.6144 -4.9760 -0.4093 14 6 5.9391 -5.1731 -0.5608 15 8 6.4333 -5.1542 -1.6715 16 7 6.7158 -5.3913 0.5189 17 6 8.1345 -5.7135 0.3476 18 1 8.2774 -6.2965 -0.5623 19 6 8.9668 -4.4163 0.2814 20 6 10.2746 -4.7654 1.0345 21 6 9.7721 -5.6577 2.1965 22 6 8.6466 -6.5028 1.5652 23 1 9.0381 -7.4688 1.2462 24 6 7.5135 -6.7044 2.5732 25 6 8.0015 -7.5949 3.7177 26 8 6.9434 -7.7828 4.6595 27 6 4.0128 -4.8869 0.9299 28 6 3.1604 -3.6094 0.9914 29 1 -0.4850 0.8400 0.0004 30 1 0.5590 -2.5191 -0.8425 31 1 0.6930 -2.5966 0.9308 32 1 3.5380 -2.7054 -1.4639 33 1 2.1525 -3.5285 -2.2201 34 1 4.3321 -4.7794 -2.4853 35 1 3.0781 -5.7208 -1.6396 36 1 6.3353 -5.3349 1.4093 37 1 9.1816 -4.1532 -0.7543 38 1 8.4429 -3.6010 0.7804 39 1 10.9560 -5.3193 0.3888 40 1 10.7534 -3.8633 1.4155 41 1 9.3793 -5.0435 3.0069 42 1 10.5746 -6.3005 2.5583 43 1 7.2049 -5.7377 2.9712 44 1 6.6671 -7.1804 2.0781 45 1 8.3100 -8.5616 3.3197 46 1 8.8479 -7.1190 4.2128 47 1 7.1824 -8.3385 5.4140 48 1 3.3837 -5.7592 1.1075 49 1 4.7998 -4.8401 1.6825 50 1 3.8055 -2.7343 0.9124 51 1 2.6202 -3.5793 1.9375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602300520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:01 Heat of formation + Delta-G solvation = -96.855249 kcal Electronic energy + Delta-G solvation = -29246.431576 eV Core-core repulsion = 25372.525639 eV Total energy + Delta-G solvation = -3873.905936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69965 -40.03143 -38.83711 -37.53516 -36.02481 -34.84969 -34.15792 -33.03091 -31.98177 -30.01130 -28.42130 -27.74926 -26.94140 -24.61892 -24.20572 -23.70816 -22.36522 -21.62421 -20.71228 -20.16635 -19.30131 -18.38873 -18.17310 -17.36786 -16.83748 -16.67152 -16.50745 -16.13197 -15.98803 -15.93607 -15.53498 -15.37635 -15.11153 -14.94395 -14.48035 -14.38794 -14.15241 -13.68850 -13.64233 -13.14469 -13.01724 -12.97216 -12.86588 -12.65989 -12.52872 -12.51222 -12.21319 -11.99890 -11.94069 -11.85350 -11.74268 -11.73706 -11.66034 -11.53126 -11.49335 -11.17603 -10.78036 -10.63458 -10.19313 -9.57946 -9.05329 -8.19131 -6.38269 1.33234 1.34325 1.42499 1.63367 2.10127 2.33695 2.86454 3.06002 3.28160 3.29449 3.55049 3.64916 3.96380 4.04940 4.10306 4.14541 4.16228 4.27950 4.34208 4.45434 4.45972 4.51191 4.51514 4.59582 4.61892 4.64870 4.74880 4.75383 4.80412 4.86349 4.99108 5.03095 5.06021 5.14211 5.15861 5.17886 5.21329 5.23665 5.30163 5.31714 5.45284 5.48046 5.65171 5.70504 5.90437 6.01681 6.19606 6.43458 6.81307 6.92376 6.97044 7.33139 7.52830 8.83128 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.003060 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.909568 B = 9146.976180 C = 9346.781434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.559 4.559 8 H 0.049 0.951 9 C 0.201 3.799 10 N -0.533 5.533 11 C 0.056 3.944 12 C 0.144 3.856 13 N -0.629 5.629 14 C 0.701 3.299 15 O -0.633 6.633 16 N -0.732 5.732 17 C 0.160 3.840 18 H 0.074 0.926 19 C -0.138 4.138 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.085 4.085 23 H 0.099 0.901 24 C -0.120 4.120 25 C 0.078 3.922 26 O -0.599 6.599 27 C 0.127 3.873 28 C 0.051 3.949 29 H 0.266 0.734 30 H 0.010 0.990 31 H 0.012 0.988 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.406 0.594 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.397 0.603 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.017 0.983 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.812 -16.984 8.869 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.598 4.598 8 H 0.067 0.933 9 C 0.075 3.925 10 N -0.257 5.257 11 C -0.073 4.073 12 C 0.021 3.979 13 N -0.365 5.365 14 C 0.403 3.597 15 O -0.515 6.515 16 N -0.391 5.391 17 C 0.055 3.945 18 H 0.092 0.908 19 C -0.177 4.177 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.104 4.104 23 H 0.118 0.882 24 C -0.158 4.158 25 C 0.001 3.999 26 O -0.408 6.408 27 C 0.004 3.996 28 C -0.079 4.079 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.247 0.753 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.247 0.753 48 H 0.109 0.891 49 H 0.113 0.887 50 H 0.035 0.965 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.412 -16.952 7.694 27.626 hybrid contribution 0.299 1.935 0.341 1.987 sum 20.711 -15.017 8.035 26.815 Atomic orbital electron populations 1.70030 1.07346 1.27984 1.50785 1.25730 0.95579 1.02540 0.94498 0.85713 0.78541 0.79329 0.78735 1.20177 1.20295 1.19471 1.21922 0.93046 0.93237 1.51613 0.93273 1.19430 0.91040 0.86268 0.95811 1.62420 1.16927 1.44536 1.01831 1.22216 0.96355 0.95891 0.92863 1.21526 0.91086 0.97364 0.87954 1.47397 1.05225 1.75520 1.08368 1.16069 0.81176 0.77598 0.84842 1.90841 1.73726 1.61220 1.25752 1.45630 1.10281 1.75491 1.07720 1.21578 0.78041 0.95733 0.99122 0.90798 1.22792 0.97265 0.97283 1.00375 1.22441 0.95632 1.00300 0.97144 1.22482 0.97370 0.97854 0.97420 1.21933 0.95584 0.99821 0.93041 0.88231 1.21580 0.98530 1.00213 0.95454 1.22203 0.89326 0.98766 0.89641 1.86444 1.40934 1.74991 1.38402 1.21929 0.96662 0.98213 0.82783 1.22367 0.94131 0.95949 0.95441 0.92476 0.97168 0.97033 0.97076 0.90620 0.89903 0.89669 0.75298 0.93071 0.92525 0.90320 0.90691 0.91138 0.88997 0.91639 0.91856 0.92537 0.91958 0.75330 0.89102 0.88726 0.96492 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.72 13.29 21.45 0.28 -54.43 16 2 C 0.02 0.93 5.46 84.66 0.46 1.40 16 3 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.56 -31.20 7.76 25.60 0.20 -31.00 16 8 H 0.05 2.76 5.88 -2.91 -0.02 2.75 16 9 C 0.20 10.47 5.11 85.56 0.44 10.90 16 10 N -0.53 -22.55 4.83 -898.88 -4.34 -26.89 16 11 C 0.06 2.26 5.25 86.38 0.45 2.72 16 12 C 0.14 4.86 6.61 86.35 0.57 5.43 16 13 N -0.63 -20.07 3.00 -835.02 -2.51 -22.58 16 14 C 0.70 22.94 8.30 179.05 1.49 24.43 16 15 O -0.63 -25.26 15.50 -3.99 -0.06 -25.32 16 16 N -0.73 -17.80 4.30 -454.35 -1.95 -19.75 16 17 C 0.16 3.30 3.19 45.72 0.15 3.45 16 18 H 0.07 1.79 7.64 -2.39 -0.02 1.77 16 19 C -0.14 -2.87 6.53 31.67 0.21 -2.66 16 20 C -0.12 -1.55 6.91 31.88 0.22 -1.33 16 21 C -0.11 -1.15 5.53 31.67 0.18 -0.98 16 22 C -0.08 -1.09 2.93 -10.07 -0.03 -1.12 16 23 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 24 C -0.12 -1.66 3.58 30.59 0.11 -1.55 16 25 C 0.08 0.83 6.90 71.98 0.50 1.33 16 26 O -0.60 -8.36 13.66 -148.98 -2.03 -10.39 16 27 C 0.13 3.54 6.57 86.51 0.57 4.11 16 28 C 0.05 1.86 5.17 86.54 0.45 2.31 16 29 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.01 0.57 8.07 -2.39 -0.02 0.56 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.01 0.51 7.11 -2.39 -0.02 0.49 16 33 H 0.08 3.03 8.05 -2.39 -0.02 3.01 16 34 H 0.08 2.90 7.04 -2.39 -0.02 2.88 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.41 8.45 3.43 -92.71 -0.32 8.13 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.32 8.05 -2.39 -0.02 1.30 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.75 7.76 -2.38 -0.02 0.73 16 42 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 0.99 7.10 -2.39 -0.02 0.98 16 44 H 0.06 1.07 7.42 -2.39 -0.02 1.05 16 45 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.06 0.47 7.51 -2.39 -0.02 0.45 16 47 H 0.40 1.95 9.12 -74.06 -0.68 1.27 16 48 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.09 2.11 5.74 -2.39 -0.01 2.10 16 50 H 0.02 0.71 6.61 -2.39 -0.02 0.70 16 51 H 0.08 2.94 8.11 -2.39 -0.02 2.93 16 Total: -1.00 -72.48 387.48 -2.70 -75.18 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.07 Total: 20.19 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 5.95 Total: 17.44 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -8.51 Total: -123.66 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -2.10 Total: -35.71 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -72.48 -2.70 -75.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602300520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.672 kcal (2) G-P(sol) polarization free energy of solvation -72.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds