Wall clock time and date at job start Fri Apr 10 2020 18:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48494 * 109.47378 * 239.99665 * 3 2 1 5 5 H 1.48497 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 119.99685 * 3 2 1 7 7 C 1.37880 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99730 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99826 * 169.99994 * 10 9 7 12 12 C 1.53245 * 109.33724 * 187.25479 * 11 10 9 13 13 N 1.47073 * 108.52241 * 306.17138 * 12 11 10 14 14 C 1.34777 * 120.88291 * 231.18954 * 13 12 11 15 15 O 1.21584 * 120.00346 * 184.99494 * 14 13 12 16 16 N 1.34774 * 119.99513 * 4.99131 * 14 13 12 17 17 C 1.46509 * 119.99807 * 175.19442 * 16 14 13 18 18 H 1.08999 * 110.43156 * 34.01890 * 17 16 14 19 19 C 1.54269 * 110.48277 * 271.48167 * 17 16 14 20 20 C 1.53878 * 106.59795 * 217.71022 * 19 17 16 21 21 C 1.54268 * 106.59645 * 359.97438 * 20 19 17 22 22 C 1.54884 * 110.48871 * 156.56417 * 17 16 14 23 23 H 1.08999 * 110.75513 * 38.30444 * 22 17 16 24 24 C 1.52997 * 110.75654 * 274.93208 * 22 17 16 25 25 C 1.53003 * 109.47464 * 174.99944 * 24 22 17 26 26 O 1.42893 * 109.47182 * 180.02562 * 25 24 22 27 27 C 1.47082 * 118.23720 * 51.45592 * 13 12 11 28 28 C 1.46902 * 110.99965 * 294.30394 * 10 9 7 29 29 H 0.97000 * 120.00380 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47335 * 59.99675 * 9 7 2 31 31 H 1.08995 * 109.47016 * 299.99706 * 9 7 2 32 32 H 1.08995 * 109.49798 * 67.29419 * 11 10 9 33 33 H 1.08998 * 109.49542 * 307.20969 * 11 10 9 34 34 H 1.08998 * 109.62759 * 186.45442 * 12 11 10 35 35 H 1.08997 * 109.62618 * 65.88248 * 12 11 10 36 36 H 0.96996 * 120.00640 * 354.91196 * 16 14 13 37 37 H 1.08999 * 110.03294 * 336.99345 * 19 17 16 38 38 H 1.08999 * 110.03394 * 98.42714 * 19 17 16 39 39 H 1.08995 * 110.03037 * 119.28340 * 20 19 17 40 40 H 1.09001 * 110.03054 * 240.66515 * 20 19 17 41 41 H 1.08997 * 110.48285 * 142.28444 * 21 20 19 42 42 H 1.08996 * 110.48753 * 264.80108 * 21 20 19 43 43 H 1.09001 * 109.47461 * 295.00466 * 24 22 17 44 44 H 1.09000 * 109.47118 * 55.00052 * 24 22 17 45 45 H 1.08999 * 109.46750 * 300.00449 * 25 24 22 46 46 H 1.09000 * 109.46865 * 59.99953 * 25 24 22 47 47 H 0.96699 * 114.00037 * 179.97438 * 26 25 24 48 48 H 1.08998 * 109.62540 * 68.25369 * 27 13 12 49 49 H 1.09000 * 109.62874 * 188.83724 * 27 13 12 50 50 H 1.09000 * 109.49089 * 292.70477 * 28 10 9 51 51 H 1.09003 * 109.49199 * 52.75688 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5211 -4.8935 0.2387 12 6 2.5637 -6.0032 0.4115 13 7 3.4615 -5.9863 -0.7533 14 6 3.7118 -7.1124 -1.4502 15 8 4.5257 -7.1002 -2.3534 16 7 3.0600 -8.2521 -1.1458 17 6 3.2530 -9.4485 -1.9690 18 1 4.2755 -9.4915 -2.3441 19 6 2.2476 -9.4669 -3.1389 20 6 1.8193 -10.9327 -3.3275 21 6 2.5799 -11.7541 -2.2660 22 6 2.9193 -10.7247 -1.1573 23 1 2.0582 -10.5568 -0.5103 24 6 4.1309 -11.1813 -0.3423 25 6 3.7344 -12.3659 0.5411 26 8 4.8660 -12.7919 1.3027 27 6 4.0837 -4.7090 -1.1338 28 6 2.9767 -3.6491 -1.2494 29 1 -0.4851 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 0.8795 -5.1264 -0.6111 33 1 0.9160 -4.8191 1.1422 34 1 2.0631 -6.9694 0.4740 35 1 3.1393 -5.8265 1.3201 36 1 2.4663 -8.2814 -0.3794 37 1 1.3804 -8.8529 -2.8956 38 1 2.7243 -9.0974 -4.0468 39 1 0.7443 -11.0301 -3.1758 40 1 2.0874 -11.2744 -4.3273 41 1 1.9449 -12.5465 -1.8698 42 1 3.4922 -12.1736 -2.6900 43 1 4.9306 -11.4838 -1.0184 44 1 4.4771 -10.3600 0.2852 45 1 2.9348 -12.0633 1.2172 46 1 3.3883 -13.1872 -0.0864 47 1 4.6872 -13.5413 1.8871 48 1 4.8026 -4.4104 -0.3709 49 1 4.5885 -4.8192 -2.0935 50 1 2.3148 -3.8993 -2.0785 51 1 3.4268 -2.6721 -1.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602300523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:08 Heat of formation + Delta-G solvation = -81.213279 kcal Electronic energy + Delta-G solvation = -28544.367551 eV Core-core repulsion = 24671.139902 eV Total energy + Delta-G solvation = -3873.227650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.45561 -38.97360 -37.50739 -36.96676 -34.42099 -33.73979 -32.44399 -32.33926 -30.67499 -28.58159 -27.48883 -27.03332 -25.37875 -23.29017 -22.77561 -22.19537 -21.05957 -20.72973 -20.13552 -19.11833 -18.03728 -17.53975 -16.82263 -16.32811 -15.70012 -15.40337 -15.32868 -14.99755 -14.69251 -14.46469 -14.38825 -14.03295 -13.91786 -13.66357 -13.58990 -13.40488 -12.97351 -12.76871 -12.27438 -12.13556 -11.95425 -11.78071 -11.54717 -11.43214 -11.27722 -11.14987 -11.07081 -10.91221 -10.83191 -10.75236 -10.67825 -10.58080 -10.50300 -10.31011 -9.96017 -9.83962 -9.29022 -9.09333 -8.47962 -8.30795 -7.32481 -6.06201 -4.08012 2.74119 3.32444 3.32940 3.36485 3.39505 3.72710 3.89821 4.21243 4.36265 4.39585 4.50030 4.73653 4.77863 4.86856 5.02980 5.08070 5.11579 5.17446 5.21900 5.25324 5.28698 5.32457 5.36821 5.39877 5.44299 5.59220 5.65410 5.68605 5.75388 5.82730 5.84321 5.90487 5.94466 6.04386 6.06632 6.07770 6.19546 6.42847 6.54889 6.57102 6.71795 7.08910 7.21906 7.23574 7.28097 7.74168 8.00494 8.04261 8.12823 8.47700 8.71979 8.99057 9.56549 11.04597 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.002325 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.793015 B =12041.803416 C =12342.316337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.119 3.881 13 N -0.625 5.625 14 C 0.708 3.292 15 O -0.596 6.596 16 N -0.744 5.744 17 C 0.166 3.834 18 H 0.096 0.904 19 C -0.138 4.138 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.096 4.096 23 H 0.083 0.917 24 C -0.112 4.112 25 C 0.076 3.924 26 O -0.576 6.576 27 C 0.133 3.867 28 C 0.051 3.949 29 H 0.262 0.738 30 H -0.009 1.009 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.394 0.606 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.379 0.621 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.024 0.976 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.958 -26.559 -0.635 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.362 5.362 14 C 0.410 3.590 15 O -0.475 6.475 16 N -0.401 5.401 17 C 0.060 3.940 18 H 0.114 0.886 19 C -0.177 4.177 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.115 4.115 23 H 0.101 0.899 24 C -0.150 4.150 25 C -0.001 4.001 26 O -0.381 6.381 27 C 0.010 3.990 28 C -0.078 4.078 29 H 0.072 0.928 30 H 0.008 0.992 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.042 0.958 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.997 -25.822 -1.257 26.159 hybrid contribution -1.027 0.414 0.093 1.111 sum 2.970 -25.407 -1.164 25.607 Atomic orbital electron populations 1.69944 1.06093 1.26966 1.50805 1.24991 0.94873 0.99368 0.95339 0.86544 0.79426 0.82642 0.78711 1.20215 1.21388 1.20123 1.21107 0.93484 0.89866 1.50369 0.91810 1.19715 0.89987 0.87222 0.96111 1.62075 1.27865 1.02436 1.33635 1.22375 0.94740 0.90990 1.00766 1.21753 0.91884 0.98110 0.88735 1.47410 1.49517 1.07960 1.31337 1.15838 0.80963 0.80289 0.81932 1.90879 1.37915 1.84564 1.34132 1.45312 1.50494 1.10421 1.33834 1.21649 1.00340 0.82089 0.89893 0.88630 1.22584 0.99428 0.96566 0.99156 1.22083 1.00068 0.94742 0.99132 1.22428 1.00584 0.97203 0.95376 1.22345 0.97881 0.94823 0.96495 0.89907 1.21508 0.97822 0.97429 0.98205 1.22214 0.87876 0.96614 0.93436 1.86497 1.37133 1.54324 1.60145 1.21824 0.95324 0.80553 1.01252 1.22452 0.95192 0.99215 0.90955 0.92831 0.99168 0.95099 0.95592 0.90182 0.91348 0.90664 0.76939 0.91296 0.91139 0.91701 0.91601 0.91324 0.91039 0.90873 0.90875 0.93748 0.93602 0.77473 0.91189 0.89395 0.95777 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.99 8.41 -34.44 -0.29 -14.28 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 9 C 0.19 4.93 4.72 -4.97 -0.02 4.91 16 10 N -0.53 -11.08 4.62 -235.47 -1.09 -12.17 16 11 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 12 C 0.12 1.59 6.59 -3.60 -0.02 1.57 16 13 N -0.63 -9.67 3.00 -177.91 -0.53 -10.20 16 14 C 0.71 11.05 8.31 -86.92 -0.72 10.32 16 15 O -0.60 -11.36 15.46 5.29 0.08 -11.28 16 16 N -0.74 -8.55 5.02 -57.05 -0.29 -8.83 16 17 C 0.17 1.68 2.67 -66.27 -0.18 1.50 16 18 H 0.10 1.17 7.44 -51.93 -0.39 0.78 16 19 C -0.14 -1.34 6.54 -25.61 -0.17 -1.50 16 20 C -0.12 -0.86 6.80 -25.61 -0.17 -1.04 16 21 C -0.12 -0.73 5.71 -24.98 -0.14 -0.87 16 22 C -0.10 -0.69 2.48 -88.54 -0.22 -0.91 16 23 H 0.08 0.52 8.02 -51.93 -0.42 0.11 16 24 C -0.11 -0.89 5.08 -26.73 -0.14 -1.03 16 25 C 0.08 0.50 6.94 37.16 0.26 0.76 16 26 O -0.58 -4.61 13.66 -35.23 -0.48 -5.09 16 27 C 0.13 2.25 6.61 -3.36 -0.02 2.23 16 28 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 1.27 7.99 -51.93 -0.41 0.85 16 34 H 0.07 0.69 5.63 -51.93 -0.29 0.39 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.39 3.69 6.04 -40.82 -0.25 3.44 16 37 H 0.07 0.71 8.04 -51.93 -0.42 0.30 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 42 H 0.07 0.44 7.94 -51.93 -0.41 0.03 16 43 H 0.07 0.64 7.99 -51.93 -0.42 0.22 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.05 0.24 7.67 -51.93 -0.40 -0.15 16 47 H 0.38 1.26 9.12 45.56 0.42 1.68 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.09 1.50 7.09 -51.93 -0.37 1.14 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -33.51 395.89 -10.87 -44.39 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.27 Total: 1.70 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.98 Total: 4.75 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -1.17 Total: -56.84 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.40 Total: -16.37 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.51 -10.87 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602300523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.827 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds