Wall clock time and date at job start Fri Apr 10 2020 18:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48494 * 109.47378 * 239.99665 * 3 2 1 5 5 H 1.48497 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 119.99685 * 3 2 1 7 7 C 1.37880 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99730 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.46893 * 110.99826 * 169.99994 * 10 9 7 12 12 C 1.53245 * 109.33724 * 187.25479 * 11 10 9 13 13 N 1.47073 * 108.52241 * 306.17138 * 12 11 10 14 14 C 1.34777 * 120.88291 * 231.18954 * 13 12 11 15 15 O 1.21584 * 120.00346 * 184.99494 * 14 13 12 16 16 N 1.34774 * 119.99513 * 4.99131 * 14 13 12 17 17 C 1.46509 * 119.99807 * 175.19442 * 16 14 13 18 18 H 1.08999 * 110.43156 * 34.01890 * 17 16 14 19 19 C 1.54269 * 110.48277 * 271.48167 * 17 16 14 20 20 C 1.53878 * 106.59795 * 217.71022 * 19 17 16 21 21 C 1.54268 * 106.59645 * 359.97438 * 20 19 17 22 22 C 1.54884 * 110.48871 * 156.56417 * 17 16 14 23 23 H 1.08999 * 110.75513 * 38.30444 * 22 17 16 24 24 C 1.52997 * 110.75654 * 274.93208 * 22 17 16 25 25 C 1.53003 * 109.47464 * 174.99944 * 24 22 17 26 26 O 1.42893 * 109.47182 * 180.02562 * 25 24 22 27 27 C 1.47082 * 118.23720 * 51.45592 * 13 12 11 28 28 C 1.46902 * 110.99965 * 294.30394 * 10 9 7 29 29 H 0.97000 * 120.00380 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47335 * 59.99675 * 9 7 2 31 31 H 1.08995 * 109.47016 * 299.99706 * 9 7 2 32 32 H 1.08995 * 109.49798 * 67.29419 * 11 10 9 33 33 H 1.08998 * 109.49542 * 307.20969 * 11 10 9 34 34 H 1.08998 * 109.62759 * 186.45442 * 12 11 10 35 35 H 1.08997 * 109.62618 * 65.88248 * 12 11 10 36 36 H 0.96996 * 120.00640 * 354.91196 * 16 14 13 37 37 H 1.08999 * 110.03294 * 336.99345 * 19 17 16 38 38 H 1.08999 * 110.03394 * 98.42714 * 19 17 16 39 39 H 1.08995 * 110.03037 * 119.28340 * 20 19 17 40 40 H 1.09001 * 110.03054 * 240.66515 * 20 19 17 41 41 H 1.08997 * 110.48285 * 142.28444 * 21 20 19 42 42 H 1.08996 * 110.48753 * 264.80108 * 21 20 19 43 43 H 1.09001 * 109.47461 * 295.00466 * 24 22 17 44 44 H 1.09000 * 109.47118 * 55.00052 * 24 22 17 45 45 H 1.08999 * 109.46750 * 300.00449 * 25 24 22 46 46 H 1.09000 * 109.46865 * 59.99953 * 25 24 22 47 47 H 0.96699 * 114.00037 * 179.97438 * 26 25 24 48 48 H 1.08998 * 109.62540 * 68.25369 * 27 13 12 49 49 H 1.09000 * 109.62874 * 188.83724 * 27 13 12 50 50 H 1.09000 * 109.49089 * 292.70477 * 28 10 9 51 51 H 1.09003 * 109.49199 * 52.75688 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5211 -4.8935 0.2387 12 6 2.5637 -6.0032 0.4115 13 7 3.4615 -5.9863 -0.7533 14 6 3.7118 -7.1124 -1.4502 15 8 4.5257 -7.1002 -2.3534 16 7 3.0600 -8.2521 -1.1458 17 6 3.2530 -9.4485 -1.9690 18 1 4.2755 -9.4915 -2.3441 19 6 2.2476 -9.4669 -3.1389 20 6 1.8193 -10.9327 -3.3275 21 6 2.5799 -11.7541 -2.2660 22 6 2.9193 -10.7247 -1.1573 23 1 2.0582 -10.5568 -0.5103 24 6 4.1309 -11.1813 -0.3423 25 6 3.7344 -12.3659 0.5411 26 8 4.8660 -12.7919 1.3027 27 6 4.0837 -4.7090 -1.1338 28 6 2.9767 -3.6491 -1.2494 29 1 -0.4851 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 0.8795 -5.1264 -0.6111 33 1 0.9160 -4.8191 1.1422 34 1 2.0631 -6.9694 0.4740 35 1 3.1393 -5.8265 1.3201 36 1 2.4663 -8.2814 -0.3794 37 1 1.3804 -8.8529 -2.8956 38 1 2.7243 -9.0974 -4.0468 39 1 0.7443 -11.0301 -3.1758 40 1 2.0874 -11.2744 -4.3273 41 1 1.9449 -12.5465 -1.8698 42 1 3.4922 -12.1736 -2.6900 43 1 4.9306 -11.4838 -1.0184 44 1 4.4771 -10.3600 0.2852 45 1 2.9348 -12.0633 1.2172 46 1 3.3883 -13.1872 -0.0864 47 1 4.6872 -13.5413 1.8871 48 1 4.8026 -4.4104 -0.3709 49 1 4.5885 -4.8192 -2.0935 50 1 2.3148 -3.8993 -2.0785 51 1 3.4268 -2.6721 -1.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602300523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:07 Heat of formation + Delta-G solvation = -106.361741 kcal Electronic energy + Delta-G solvation = -28545.458071 eV Core-core repulsion = 24671.139902 eV Total energy + Delta-G solvation = -3874.318169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.60517 -39.89866 -38.81189 -37.59624 -35.99172 -34.90481 -34.24714 -33.04744 -32.03806 -30.13248 -28.48366 -27.78739 -27.00528 -24.65554 -23.98130 -23.36193 -22.39733 -21.48990 -21.09121 -20.24285 -19.12339 -18.50436 -18.17770 -17.73743 -16.83113 -16.54748 -16.42171 -16.11692 -15.97247 -15.79143 -15.44692 -15.36685 -15.13426 -14.95183 -14.60617 -14.30941 -14.15679 -13.97139 -13.58698 -13.42666 -13.09213 -12.96610 -12.76350 -12.57405 -12.41379 -12.39021 -12.31643 -12.18280 -12.12148 -12.06695 -11.75797 -11.67168 -11.50629 -11.38414 -11.31592 -11.15941 -10.79162 -10.61363 -10.20534 -9.59710 -9.04968 -8.20977 -6.30718 1.42335 1.44860 1.52587 1.59240 2.09273 2.40468 2.85452 3.11258 3.20800 3.23314 3.55463 3.76030 3.92390 3.93917 4.04322 4.13181 4.16764 4.24170 4.33857 4.42360 4.44801 4.47962 4.52834 4.56780 4.58926 4.61811 4.70330 4.70954 4.79058 4.83840 4.93554 5.00928 5.01497 5.08131 5.16131 5.17739 5.21202 5.22422 5.24964 5.29646 5.43805 5.49570 5.63025 5.64760 5.92885 6.03153 6.25118 6.57864 6.84483 6.93312 6.95151 7.38961 7.51867 8.89880 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.002325 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.793015 B =12041.803416 C =12342.316337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.065 0.935 9 C 0.210 3.790 10 N -0.538 5.538 11 C 0.038 3.962 12 C 0.127 3.873 13 N -0.629 5.629 14 C 0.705 3.295 15 O -0.635 6.635 16 N -0.726 5.726 17 C 0.160 3.840 18 H 0.069 0.931 19 C -0.138 4.138 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.082 4.082 23 H 0.102 0.898 24 C -0.111 4.111 25 C 0.077 3.923 26 O -0.602 6.602 27 C 0.145 3.855 28 C 0.058 3.942 29 H 0.264 0.736 30 H -0.042 1.042 31 H 0.012 0.988 32 H 0.019 0.981 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.407 0.593 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.397 0.603 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.009 0.991 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.877 -28.560 0.472 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.083 0.917 9 C 0.084 3.916 10 N -0.263 5.263 11 C -0.091 4.091 12 C 0.004 3.996 13 N -0.366 5.366 14 C 0.406 3.594 15 O -0.517 6.517 16 N -0.384 5.384 17 C 0.055 3.945 18 H 0.088 0.912 19 C -0.177 4.177 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.101 4.101 23 H 0.120 0.880 24 C -0.148 4.148 25 C -0.001 4.001 26 O -0.411 6.411 27 C 0.022 3.978 28 C -0.071 4.071 29 H 0.073 0.927 30 H -0.025 1.025 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.247 0.753 48 H 0.096 0.904 49 H 0.102 0.898 50 H 0.027 0.973 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.899 -27.885 -0.117 28.157 hybrid contribution -1.014 0.976 -0.270 1.433 sum 2.885 -26.910 -0.387 27.067 Atomic orbital electron populations 1.70068 1.07689 1.27965 1.51713 1.25890 0.95725 1.03141 0.94814 0.85457 0.78160 0.78016 0.79126 1.19424 1.20985 1.19177 1.21439 0.93708 0.91014 1.50113 0.91707 1.19362 0.89979 0.88741 0.93546 1.61996 1.27090 1.03150 1.34091 1.22520 0.95733 0.89959 1.00864 1.21842 0.90888 0.98694 0.88134 1.47418 1.49772 1.07445 1.31944 1.16007 0.80905 0.81055 0.81404 1.90854 1.39745 1.85259 1.35803 1.45210 1.49545 1.09547 1.34071 1.21779 0.99197 0.82812 0.90699 0.91234 1.22546 0.98717 0.98550 0.97870 1.22059 1.00934 0.92678 0.99787 1.22432 1.00875 0.97210 0.94504 1.22270 0.98090 0.93144 0.96607 0.87970 1.21467 0.97738 0.97607 0.98029 1.22246 0.87708 0.96439 0.93663 1.86443 1.38236 1.55551 1.60890 1.21569 0.94239 0.80573 1.01451 1.22353 0.95396 0.99397 0.89940 0.92692 1.02456 0.97026 0.96316 0.89158 0.87263 0.89586 0.75372 0.91873 0.93424 0.90386 0.91296 0.88878 0.91177 0.92250 0.92827 0.92321 0.91829 0.75309 0.90395 0.89830 0.97296 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.52 -29.32 8.41 25.60 0.22 -29.10 16 8 H 0.06 3.54 7.13 -2.91 -0.02 3.51 16 9 C 0.21 10.98 4.72 85.56 0.40 11.39 16 10 N -0.54 -22.56 4.62 -898.88 -4.15 -26.71 16 11 C 0.04 1.25 5.62 86.39 0.49 1.73 16 12 C 0.13 3.12 6.59 86.35 0.57 3.69 16 13 N -0.63 -18.87 3.00 -835.06 -2.51 -21.37 16 14 C 0.70 21.61 8.31 179.05 1.49 23.10 16 15 O -0.63 -24.60 15.46 -3.98 -0.06 -24.66 16 16 N -0.73 -15.69 5.02 -452.67 -2.27 -17.96 16 17 C 0.16 3.11 2.67 46.06 0.12 3.23 16 18 H 0.07 1.75 7.44 -2.39 -0.02 1.73 16 19 C -0.14 -2.57 6.54 31.32 0.20 -2.36 16 20 C -0.12 -1.39 6.80 31.32 0.21 -1.18 16 21 C -0.11 -1.05 5.71 31.73 0.18 -0.87 16 22 C -0.08 -0.97 2.48 -9.45 -0.02 -0.99 16 23 H 0.10 0.88 8.02 -2.39 -0.02 0.86 16 24 C -0.11 -1.58 5.08 30.59 0.16 -1.42 16 25 C 0.08 0.80 6.94 71.98 0.50 1.30 16 26 O -0.60 -8.46 13.66 -148.98 -2.03 -10.49 16 27 C 0.15 4.90 6.61 86.50 0.57 5.47 16 28 C 0.06 2.32 5.47 86.54 0.47 2.80 16 29 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 30 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 31 H 0.01 0.65 7.97 -2.39 -0.02 0.63 16 32 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 2.76 7.99 -2.39 -0.02 2.74 16 34 H 0.11 1.79 5.63 -2.39 -0.01 1.78 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.41 6.46 6.04 -92.71 -0.56 5.90 16 37 H 0.06 1.24 8.04 -2.39 -0.02 1.22 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.50 8.10 -2.39 -0.02 0.48 16 42 H 0.07 0.71 7.94 -2.39 -0.02 0.69 16 43 H 0.06 1.00 7.99 -2.39 -0.02 0.98 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.06 0.44 7.67 -2.39 -0.02 0.42 16 47 H 0.40 1.79 9.12 -74.06 -0.68 1.11 16 48 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 49 H 0.08 2.91 7.09 -2.39 -0.02 2.89 16 50 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 51 H 0.08 3.40 6.67 -2.39 -0.02 3.39 16 Total: -1.00 -74.93 395.89 -3.01 -77.94 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -0.32 Total: 15.31 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.02 Total: 17.37 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -8.65 Total: -121.55 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -2.10 Total: -35.15 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -74.93 -3.01 -77.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602300523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.422 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds