Wall clock time and date at job start Fri Apr 10 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99847 * 2 1 4 4 O 1.20826 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99832 * 179.97438 * 3 2 1 6 6 H 1.09006 * 112.84733 * 50.33400 * 5 3 2 7 7 C 1.53786 * 113.61282 * 181.52497 * 5 3 2 8 8 C 1.53780 * 87.07831 * 140.06637 * 7 5 3 9 9 H 1.08997 * 113.61733 * 219.93491 * 8 7 5 10 10 N 1.46504 * 113.61149 * 89.11844 * 8 7 5 11 11 C 1.34776 * 119.99677 * 155.00092 * 10 8 7 12 12 O 1.21585 * 120.00502 * 354.92039 * 11 10 8 13 13 N 1.34785 * 119.99822 * 174.92156 * 11 10 8 14 14 C 1.47076 * 120.87906 * 184.71475 * 13 11 10 15 15 C 1.53698 * 108.27768 * 128.75464 * 14 13 11 16 16 N 1.46904 * 109.25329 * 54.08135 * 15 14 13 17 17 C 1.46903 * 110.99774 * 172.61290 * 16 15 14 18 18 C 1.50701 * 109.46818 * 294.29864 * 17 16 15 19 19 H 1.08004 * 119.99916 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99976 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00268 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99885 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47360 * 90.00078 * 22 20 18 24 24 H 1.48501 * 109.47055 * 210.00313 * 22 20 18 25 25 H 1.48495 * 109.47140 * 329.99718 * 22 20 18 26 26 C 1.46897 * 111.26718 * 296.75767 * 16 15 14 27 27 C 1.47080 * 120.87809 * 4.99299 * 13 11 10 28 28 C 1.53773 * 113.61615 * 279.13538 * 5 3 2 29 29 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47450 * 299.99887 * 1 2 3 31 31 H 1.08998 * 109.47130 * 60.00227 * 1 2 3 32 32 H 1.08993 * 113.61507 * 254.61384 * 7 5 3 33 33 H 1.08995 * 113.60941 * 25.43566 * 7 5 3 34 34 H 0.96997 * 120.00115 * 334.99579 * 10 8 7 35 35 H 1.09005 * 109.62923 * 248.51990 * 14 13 11 36 36 H 1.09001 * 109.62989 * 9.10733 * 14 13 11 37 37 H 1.08999 * 109.64933 * 294.08155 * 15 14 13 38 38 H 1.08996 * 109.44641 * 173.95757 * 15 14 13 39 39 H 1.08996 * 109.47073 * 54.29808 * 17 16 15 40 40 H 1.08998 * 109.46850 * 174.30552 * 17 16 15 41 41 H 0.97001 * 120.00657 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.49362 * 303.14476 * 26 16 15 43 43 H 1.09000 * 109.51546 * 183.08017 * 26 16 15 44 44 H 1.08991 * 109.62924 * 350.89646 * 27 13 11 45 45 H 1.08997 * 109.62431 * 111.48089 * 27 13 11 46 46 H 1.08999 * 113.61824 * 334.48475 * 28 5 3 47 47 H 1.09002 * 113.61425 * 105.38918 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0228 0.6565 -0.7724 7 6 4.1077 2.7138 0.0380 8 6 5.1833 2.2000 1.0096 9 1 5.4014 2.8904 1.8244 10 7 6.3911 1.7089 0.3415 11 6 7.5690 1.7045 0.9965 12 8 7.6488 2.1924 2.1073 13 7 8.6585 1.1591 0.4202 14 6 9.9274 1.0509 1.1561 15 6 10.4222 -0.4006 1.0528 16 7 10.4902 -0.7897 -0.3621 17 6 11.1230 -2.1065 -0.5161 18 6 12.5660 -2.0233 -0.0898 19 1 12.9723 -1.0860 0.2609 20 6 13.3676 -3.1436 -0.1474 21 7 12.8729 -4.2849 -0.5739 22 14 15.1562 -3.0405 0.3817 23 1 15.2618 -3.3441 1.8314 24 1 15.9580 -4.0239 -0.3897 25 1 15.6705 -1.6716 0.1239 26 6 9.1600 -0.7688 -0.9850 27 6 8.6117 0.6619 -0.9632 28 6 4.1926 1.0840 1.3919 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.5085 3.0545 -0.9166 33 1 3.4176 3.4283 0.4866 34 1 6.3431 1.3869 -0.5722 35 1 10.6638 1.7240 0.7171 36 1 9.7672 1.3108 2.2024 37 1 9.7330 -1.0611 1.5790 38 1 11.4133 -0.4787 1.4995 39 1 10.6020 -2.8349 0.1053 40 1 11.0698 -2.4152 -1.5601 41 1 13.4369 -5.0731 -0.6149 42 1 8.4883 -1.4242 -0.4304 43 1 9.2353 -1.1138 -2.0162 44 1 7.5814 0.6647 -1.3186 45 1 9.2241 1.2984 -1.6019 46 1 3.5264 1.3536 2.2115 47 1 4.6619 0.1099 1.5296 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602342090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:16 Heat of formation + Delta-G solvation = -94.986405 kcal Electronic energy + Delta-G solvation = -27813.288777 eV Core-core repulsion = 23803.630786 eV Total energy + Delta-G solvation = -4009.657992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.06830 -41.33269 -39.74186 -38.70197 -37.41068 -35.96806 -34.61410 -34.01667 -31.93404 -30.02583 -29.26282 -27.36742 -26.79792 -26.66427 -24.63672 -23.96384 -22.74618 -22.17995 -20.69212 -20.42522 -19.15718 -18.66405 -18.45937 -17.86156 -17.41268 -17.23971 -16.75369 -16.53315 -16.19320 -15.94329 -15.51169 -15.43271 -15.24464 -14.93194 -14.82665 -14.50317 -14.18249 -13.98282 -13.72438 -13.49888 -13.36210 -13.12914 -13.02886 -12.81835 -12.70557 -12.56711 -12.35357 -12.29535 -12.14259 -11.83604 -11.79312 -11.73165 -11.68363 -11.36209 -11.32177 -11.14899 -10.60609 -10.22433 -9.59389 -9.01185 -8.19406 -6.28807 1.09307 1.43794 1.44089 1.54990 1.56226 1.76228 2.08682 2.41849 2.82867 3.13258 3.25199 3.27864 3.38391 3.73721 3.80795 3.97860 4.07776 4.10211 4.17857 4.28549 4.29015 4.31506 4.47493 4.52604 4.60070 4.67056 4.70683 4.73981 4.76709 4.85077 4.89550 4.94237 4.98203 5.04086 5.05735 5.20244 5.25590 5.36234 5.46292 5.59520 5.65751 5.93955 6.05749 6.28407 6.61365 6.68189 6.87037 6.93737 7.40966 7.52122 8.91553 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022010 B = 0.002248 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.820845 B =12451.775955 C =13258.363358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.365 6.365 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.106 4.106 6 H 0.147 0.853 7 C -0.111 4.111 8 C 0.138 3.862 9 H 0.096 0.904 10 N -0.715 5.715 11 C 0.709 3.291 12 O -0.631 6.631 13 N -0.628 5.628 14 C 0.146 3.854 15 C 0.057 3.943 16 N -0.539 5.539 17 C 0.209 3.791 18 C -0.522 4.522 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.263 1.263 26 C 0.037 3.963 27 C 0.126 3.874 28 C -0.132 4.132 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.410 0.590 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.010 0.990 38 H 0.078 0.922 39 H -0.042 1.042 40 H 0.011 0.989 41 H 0.264 0.736 42 H 0.020 0.980 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.377 11.382 -1.856 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.317 3.683 4 O -0.424 6.424 5 C -0.125 4.125 6 H 0.164 0.836 7 C -0.149 4.149 8 C 0.032 3.968 9 H 0.114 0.886 10 N -0.373 5.373 11 C 0.410 3.590 12 O -0.512 6.512 13 N -0.364 5.364 14 C 0.022 3.978 15 C -0.072 4.072 16 N -0.264 5.264 17 C 0.083 3.917 18 C -0.561 4.561 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.201 1.201 24 H -0.209 1.209 25 H -0.188 1.188 26 C -0.092 4.092 27 C 0.004 3.996 28 C -0.171 4.171 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.250 0.750 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.028 0.972 38 H 0.097 0.903 39 H -0.024 1.024 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.107 0.893 44 H 0.131 0.869 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.227 12.170 -1.348 25.376 hybrid contribution 0.164 -1.406 0.281 1.443 sum -22.063 10.763 -1.067 24.571 Atomic orbital electron populations 1.23533 0.75043 1.05554 1.02534 1.86539 1.24855 1.33276 1.83489 1.23998 0.92421 0.80994 0.70917 1.90653 1.67789 1.37271 1.46737 1.22754 0.86033 1.01591 1.02095 0.83557 1.23277 0.95890 0.94351 1.01429 1.21641 0.82697 0.96019 0.96477 0.88566 1.44768 1.05597 1.69116 1.17795 1.15913 0.80816 0.78627 0.83612 1.90872 1.85156 1.53573 1.21630 1.47414 1.10234 1.63260 1.15494 1.21581 0.83640 0.95277 0.97296 1.22370 1.00467 0.95010 0.89395 1.61995 1.19478 1.30322 1.14563 1.19364 0.93505 0.84080 0.94755 1.21478 0.95843 0.95857 1.42873 0.91647 1.25883 1.03413 0.94917 0.95428 1.70071 1.38052 1.01077 1.48279 0.85413 0.79022 0.78248 0.78131 1.20115 1.20926 1.18753 1.22536 0.89474 0.96890 1.00339 1.21869 1.02555 0.93556 0.81657 1.23452 0.97677 1.00947 0.94995 0.85505 0.92018 0.91775 0.87961 0.87590 0.75014 0.90330 0.89630 0.97159 0.90327 1.02414 0.97065 0.92745 0.96150 0.89266 0.86949 0.89461 0.88364 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.37 -5.85 10.57 -51.42 -0.54 -6.39 16 3 C 0.47 7.99 7.48 71.24 0.53 8.52 16 4 O -0.53 -11.78 15.66 21.96 0.34 -11.43 16 5 C -0.11 -1.28 4.13 -11.01 -0.05 -1.33 16 6 H 0.15 1.16 8.14 -2.38 -0.02 1.14 16 7 C -0.11 -1.32 7.14 31.12 0.22 -1.10 16 8 C 0.14 2.23 4.36 45.61 0.20 2.43 16 9 H 0.10 1.96 7.42 -2.39 -0.02 1.94 16 10 N -0.72 -12.76 5.18 -454.84 -2.36 -15.12 16 11 C 0.71 19.27 8.31 179.05 1.49 20.76 16 12 O -0.63 -22.24 15.40 -3.98 -0.06 -22.30 16 13 N -0.63 -16.97 3.00 -835.05 -2.51 -19.48 16 14 C 0.15 4.55 6.61 86.50 0.57 5.12 16 15 C 0.06 2.15 5.47 86.54 0.47 2.62 16 16 N -0.54 -21.66 4.62 -898.88 -4.15 -25.81 16 17 C 0.21 10.69 4.72 85.56 0.40 11.09 16 18 C -0.52 -28.66 8.41 25.60 0.22 -28.44 16 19 H 0.07 3.50 7.13 -2.91 -0.02 3.48 16 20 C 0.00 0.09 5.46 84.66 0.46 0.55 16 21 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 22 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 26 C 0.04 1.12 5.62 86.38 0.49 1.60 16 27 C 0.13 2.76 6.59 86.35 0.57 3.32 16 28 C -0.13 -1.90 7.45 31.21 0.23 -1.67 16 29 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 1.43 7.45 -2.39 -0.02 1.41 16 34 H 0.41 4.86 6.20 -92.71 -0.57 4.29 16 35 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.09 2.75 7.09 -2.39 -0.02 2.74 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.08 3.23 6.67 -2.39 -0.02 3.22 16 39 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 40 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 41 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 2.58 7.99 -2.39 -0.02 2.56 16 44 H 0.11 1.47 5.63 -2.39 -0.01 1.46 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.10 1.39 8.09 -2.39 -0.02 1.37 16 47 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -74.18 380.36 0.44 -73.74 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.40 Total: 11.19 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 7.01 Total: 24.98 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -8.73 Total: -115.31 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.26 Total: -40.12 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.18 0.44 -73.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602342090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.247 kcal (2) G-P(sol) polarization free energy of solvation -74.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds