Wall clock time and date at job start Fri Apr 10 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99716 * 2 1 4 4 H 1.48506 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47357 * 300.00004 * 3 2 1 6 6 H 1.48501 * 109.46828 * 60.00260 * 3 2 1 7 7 C 1.38815 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00358 * 163.07623 * 7 2 1 9 9 N 1.36938 * 119.99737 * 343.07050 * 7 2 1 10 10 C 1.46923 * 120.63160 * 331.83824 * 9 7 2 11 11 C 1.53188 * 108.77571 * 233.58533 * 10 9 7 12 12 C 1.53042 * 109.31357 * 305.36578 * 11 10 9 13 13 N 1.46499 * 109.45994 * 181.38830 * 12 11 10 14 14 C 1.34777 * 119.99870 * 155.00404 * 13 12 11 15 15 O 1.21581 * 120.00081 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47451 * 179.97438 * 17 16 14 19 19 H 1.09002 * 109.47277 * 304.99864 * 18 17 16 20 20 C 1.52998 * 109.47046 * 64.99607 * 18 17 16 21 21 C 1.53002 * 109.47037 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.47046 * 299.99667 * 21 20 18 23 23 C 1.53007 * 109.46858 * 60.00336 * 22 21 20 24 24 H 1.08994 * 109.47237 * 59.99852 * 23 22 21 25 25 O 1.42901 * 109.46936 * 180.02562 * 23 22 21 26 26 C 1.53000 * 109.46670 * 299.99581 * 23 22 21 27 27 C 1.53033 * 109.53848 * 61.36403 * 12 11 10 28 28 C 1.46922 * 120.62639 * 151.81464 * 9 7 2 29 29 H 0.96995 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58918 * 113.79476 * 10 9 7 31 31 H 1.09001 * 109.58654 * 353.37273 * 10 9 7 32 32 H 1.09003 * 109.49803 * 185.41372 * 11 10 9 33 33 H 1.09006 * 109.49934 * 65.31837 * 11 10 9 34 34 H 1.09004 * 109.45783 * 301.35617 * 12 11 10 35 35 H 0.97001 * 119.99750 * 334.99685 * 13 12 11 36 36 H 0.97001 * 119.99824 * 359.97438 * 16 14 13 37 37 H 1.08998 * 109.47070 * 59.98927 * 17 16 14 38 38 H 1.09007 * 109.46562 * 299.99354 * 17 16 14 39 39 H 1.09000 * 109.47582 * 60.00194 * 20 18 17 40 40 H 1.08999 * 109.47456 * 299.99727 * 20 18 17 41 41 H 1.09002 * 109.47544 * 180.02562 * 21 20 18 42 42 H 1.08994 * 109.47256 * 59.99941 * 21 20 18 43 43 H 1.08994 * 109.47317 * 300.00237 * 22 21 20 44 44 H 1.09005 * 109.47204 * 180.02562 * 22 21 20 45 45 H 0.96696 * 114.00027 * 299.99621 * 25 23 22 46 46 H 1.09000 * 109.46834 * 179.97438 * 26 23 22 47 47 H 1.08994 * 109.47512 * 300.00103 * 26 23 22 48 48 H 1.09007 * 109.49595 * 58.58579 * 27 12 11 49 49 H 1.08999 * 109.50221 * 178.68219 * 27 12 11 50 50 H 1.09001 * 109.58648 * 246.19982 * 28 9 7 51 51 H 1.08991 * 109.59276 * 6.48848 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2223 -0.2728 9 7 1.3702 -2.3625 0.3443 10 6 0.2263 -2.3410 1.2662 11 6 0.4978 -3.3211 2.4117 12 6 0.8123 -4.7023 1.8324 13 7 1.0399 -5.6500 2.9261 14 6 0.8366 -6.9677 2.7293 15 8 0.4637 -7.3698 1.6442 16 7 1.0465 -7.8396 3.7353 17 6 0.8260 -9.2720 3.5213 18 6 1.1346 -10.0340 4.8116 19 1 2.1454 -9.7945 5.1421 20 6 0.1341 -9.6279 5.8955 21 6 0.4431 -10.3895 7.1860 22 6 0.3340 -11.8938 6.9290 23 6 1.3347 -12.2999 5.8451 24 1 2.3453 -12.0601 6.1754 25 8 1.2323 -13.7048 5.6047 26 6 1.0255 -11.5383 4.5546 27 6 2.0675 -4.6181 0.9611 28 6 1.8139 -3.6526 -0.2010 29 1 -0.4850 0.8400 0.0004 30 1 -0.6769 -2.6410 0.7349 31 1 0.0996 -1.3356 1.6677 32 1 -0.3827 -3.3865 3.0509 33 1 1.3477 -2.9700 2.9972 34 1 -0.0280 -5.0418 1.2267 35 1 1.3372 -5.3291 3.7919 36 1 1.3443 -7.5187 4.6010 37 1 1.4813 -9.6255 2.7253 38 1 -0.2131 -9.4413 3.2387 39 1 -0.8767 -9.8673 5.5651 40 1 0.2121 -8.5563 6.0789 41 1 -0.2699 -10.1005 7.9581 42 1 1.4538 -10.1496 7.5163 43 1 -0.6766 -12.1336 6.5988 44 1 0.5538 -12.4364 7.8486 45 1 1.4156 -14.2511 6.3812 46 1 1.7386 -11.8273 3.7826 47 1 0.0149 -11.7782 4.2244 48 1 2.9026 -4.2548 1.5602 49 1 2.3043 -5.6067 0.5677 50 1 1.0401 -4.0597 -0.8520 51 1 2.7331 -3.5124 -0.7696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610402735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:43 Heat of formation + Delta-G solvation = -86.543415 kcal Electronic energy + Delta-G solvation = -27976.691263 eV Core-core repulsion = 24103.232481 eV Total energy + Delta-G solvation = -3873.458782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.18723 -39.40340 -37.51823 -36.47914 -34.51744 -34.23669 -32.24714 -31.45039 -30.12604 -29.85683 -29.18338 -26.13287 -24.73121 -22.91800 -22.33600 -22.08414 -21.54089 -20.63664 -20.23511 -19.38271 -18.18174 -17.42963 -16.79931 -16.26699 -15.87691 -15.48284 -14.98742 -14.95641 -14.75682 -14.39155 -14.22373 -13.98069 -13.67795 -13.51775 -13.35636 -13.04762 -12.95441 -12.65604 -12.53486 -12.29154 -12.26902 -11.80606 -11.52416 -11.42228 -11.14468 -11.10108 -11.03156 -10.81654 -10.71985 -10.65944 -10.45021 -10.23447 -10.20598 -10.01672 -9.97541 -9.72170 -9.50706 -9.12437 -8.56371 -8.41248 -6.66155 -5.78007 -3.20028 2.81035 3.37440 3.42418 3.45479 3.47825 3.68405 4.14399 4.19282 4.39424 4.50688 4.50746 4.59859 4.71589 4.80763 4.91845 4.98585 5.05652 5.15900 5.36347 5.39837 5.43672 5.49803 5.52906 5.54710 5.62960 5.65456 5.68197 5.69907 5.73783 5.84700 5.93853 5.99838 6.11921 6.32817 6.39837 6.46606 6.53431 6.61659 6.64987 6.84098 6.94691 7.02701 7.15273 7.19259 7.34682 7.64105 7.81252 8.19271 8.46424 8.80791 9.22556 9.85886 10.43178 11.30929 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.037448 B = 0.001901 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.525925 B =14724.332595 C =15011.061175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.740 5.740 14 C 0.701 3.299 15 O -0.591 6.591 16 N -0.752 5.752 17 C 0.146 3.854 18 C -0.095 4.095 19 H 0.079 0.921 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.153 4.153 23 C 0.106 3.894 24 H 0.055 0.945 25 O -0.569 6.569 26 C -0.105 4.105 27 C -0.139 4.139 28 C 0.147 3.853 29 H 0.253 0.747 30 H 0.021 0.979 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.390 0.610 36 H 0.393 0.607 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.377 0.623 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.020 0.980 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 -22.918 17.848 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.401 3.599 15 O -0.469 6.469 16 N -0.409 5.409 17 C 0.021 3.979 18 C -0.114 4.114 19 H 0.097 0.903 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.190 4.190 23 C 0.047 3.953 24 H 0.073 0.927 25 O -0.374 6.374 26 C -0.143 4.143 27 C -0.179 4.179 28 C 0.020 3.980 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.223 0.777 36 H 0.226 0.774 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.224 0.776 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.038 0.962 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.426 -22.922 16.181 28.094 hybrid contribution 0.823 0.962 1.518 1.977 sum 2.249 -21.960 17.699 28.294 Atomic orbital electron populations 1.70035 1.05237 1.25378 1.54139 1.25060 0.95298 0.98419 1.01001 0.86230 0.79359 0.83984 0.77245 1.20281 1.21737 1.21616 1.19238 0.92592 0.84743 1.41397 0.91614 1.44105 1.35820 1.01688 1.49961 1.20747 0.88934 0.97857 0.87695 1.22541 1.00434 0.94803 1.00806 1.20898 0.98314 0.87482 0.86797 1.45544 1.72775 1.04958 1.16040 1.16019 0.78578 0.81276 0.84068 1.90922 1.53481 1.78055 1.24403 1.45133 1.74782 1.06787 1.14159 1.21123 1.01762 0.78715 0.96299 1.21336 1.00359 0.94476 0.95220 0.90296 1.21657 0.99476 1.00057 0.94380 1.21482 1.02037 0.94247 0.97721 1.22292 1.01004 0.96927 0.98825 1.21781 0.97378 0.80910 0.95185 0.92726 1.86527 1.93851 1.17029 1.40002 1.21410 1.03546 0.92670 0.96707 1.22387 0.97265 0.99468 0.98829 1.20880 0.97875 0.86511 0.92708 0.93676 0.96074 0.89052 0.92808 0.92274 0.90114 0.77716 0.77387 0.91566 0.91564 0.91334 0.91455 0.91492 0.91784 0.91006 0.91856 0.77591 0.90748 0.90689 0.92509 0.92719 0.96164 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 11.20 55.49 0.62 -25.56 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.95 2.99 -172.32 -0.52 -15.46 16 10 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 11 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 12 C 0.17 3.01 2.41 -67.89 -0.16 2.85 16 13 N -0.74 -10.56 5.08 -58.64 -0.30 -10.86 16 14 C 0.70 10.59 8.53 -86.92 -0.74 9.85 16 15 O -0.59 -11.65 16.01 5.29 0.08 -11.56 16 16 N -0.75 -7.84 5.29 -65.23 -0.34 -8.19 16 17 C 0.15 1.39 5.07 -4.04 -0.02 1.37 16 18 C -0.09 -0.62 2.22 -90.62 -0.20 -0.82 16 19 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 20 C -0.12 -0.70 5.08 -26.73 -0.14 -0.83 16 21 C -0.12 -0.58 5.92 -26.73 -0.16 -0.73 16 22 C -0.15 -0.78 5.55 -26.73 -0.15 -0.93 16 23 C 0.11 0.65 3.47 -26.73 -0.09 0.56 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 O -0.57 -4.02 13.32 -35.23 -0.47 -4.49 16 26 C -0.11 -0.74 4.85 -26.73 -0.13 -0.87 16 27 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 28 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 35 H 0.39 4.38 8.62 -40.82 -0.35 4.03 16 36 H 0.39 2.95 7.67 -40.82 -0.31 2.63 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.38 7.18 -51.93 -0.37 0.01 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.38 1.09 9.08 45.56 0.41 1.51 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -33.63 394.14 -10.86 -44.48 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.48 Total: 4.05 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.36 Total: 5.07 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.54 Total: -60.07 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.38 Total: -16.05 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.63 -10.86 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610402735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.061 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds