Wall clock time and date at job start Fri Apr 10 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99716 * 2 1 4 4 H 1.48506 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47357 * 300.00004 * 3 2 1 6 6 H 1.48501 * 109.46828 * 60.00260 * 3 2 1 7 7 C 1.38815 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00358 * 163.07623 * 7 2 1 9 9 N 1.36938 * 119.99737 * 343.07050 * 7 2 1 10 10 C 1.46923 * 120.63160 * 331.83824 * 9 7 2 11 11 C 1.53188 * 108.77571 * 233.58533 * 10 9 7 12 12 C 1.53042 * 109.31357 * 305.36578 * 11 10 9 13 13 N 1.46499 * 109.45994 * 181.38830 * 12 11 10 14 14 C 1.34777 * 119.99870 * 155.00404 * 13 12 11 15 15 O 1.21581 * 120.00081 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47451 * 179.97438 * 17 16 14 19 19 H 1.09002 * 109.47277 * 304.99864 * 18 17 16 20 20 C 1.52998 * 109.47046 * 64.99607 * 18 17 16 21 21 C 1.53002 * 109.47037 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.47046 * 299.99667 * 21 20 18 23 23 C 1.53007 * 109.46858 * 60.00336 * 22 21 20 24 24 H 1.08994 * 109.47237 * 59.99852 * 23 22 21 25 25 O 1.42901 * 109.46936 * 180.02562 * 23 22 21 26 26 C 1.53000 * 109.46670 * 299.99581 * 23 22 21 27 27 C 1.53033 * 109.53848 * 61.36403 * 12 11 10 28 28 C 1.46922 * 120.62639 * 151.81464 * 9 7 2 29 29 H 0.96995 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58918 * 113.79476 * 10 9 7 31 31 H 1.09001 * 109.58654 * 353.37273 * 10 9 7 32 32 H 1.09003 * 109.49803 * 185.41372 * 11 10 9 33 33 H 1.09006 * 109.49934 * 65.31837 * 11 10 9 34 34 H 1.09004 * 109.45783 * 301.35617 * 12 11 10 35 35 H 0.97001 * 119.99750 * 334.99685 * 13 12 11 36 36 H 0.97001 * 119.99824 * 359.97438 * 16 14 13 37 37 H 1.08998 * 109.47070 * 59.98927 * 17 16 14 38 38 H 1.09007 * 109.46562 * 299.99354 * 17 16 14 39 39 H 1.09000 * 109.47582 * 60.00194 * 20 18 17 40 40 H 1.08999 * 109.47456 * 299.99727 * 20 18 17 41 41 H 1.09002 * 109.47544 * 180.02562 * 21 20 18 42 42 H 1.08994 * 109.47256 * 59.99941 * 21 20 18 43 43 H 1.08994 * 109.47317 * 300.00237 * 22 21 20 44 44 H 1.09005 * 109.47204 * 180.02562 * 22 21 20 45 45 H 0.96696 * 114.00027 * 299.99621 * 25 23 22 46 46 H 1.09000 * 109.46834 * 179.97438 * 26 23 22 47 47 H 1.08994 * 109.47512 * 300.00103 * 26 23 22 48 48 H 1.09007 * 109.49595 * 58.58579 * 27 12 11 49 49 H 1.08999 * 109.50221 * 178.68219 * 27 12 11 50 50 H 1.09001 * 109.58648 * 246.19982 * 28 9 7 51 51 H 1.08991 * 109.59276 * 6.48848 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2223 -0.2728 9 7 1.3702 -2.3625 0.3443 10 6 0.2263 -2.3410 1.2662 11 6 0.4978 -3.3211 2.4117 12 6 0.8123 -4.7023 1.8324 13 7 1.0399 -5.6500 2.9261 14 6 0.8366 -6.9677 2.7293 15 8 0.4637 -7.3698 1.6442 16 7 1.0465 -7.8396 3.7353 17 6 0.8260 -9.2720 3.5213 18 6 1.1346 -10.0340 4.8116 19 1 2.1454 -9.7945 5.1421 20 6 0.1341 -9.6279 5.8955 21 6 0.4431 -10.3895 7.1860 22 6 0.3340 -11.8938 6.9290 23 6 1.3347 -12.2999 5.8451 24 1 2.3453 -12.0601 6.1754 25 8 1.2323 -13.7048 5.6047 26 6 1.0255 -11.5383 4.5546 27 6 2.0675 -4.6181 0.9611 28 6 1.8139 -3.6526 -0.2010 29 1 -0.4850 0.8400 0.0004 30 1 -0.6769 -2.6410 0.7349 31 1 0.0996 -1.3356 1.6677 32 1 -0.3827 -3.3865 3.0509 33 1 1.3477 -2.9700 2.9972 34 1 -0.0280 -5.0418 1.2267 35 1 1.3372 -5.3291 3.7919 36 1 1.3443 -7.5187 4.6010 37 1 1.4813 -9.6255 2.7253 38 1 -0.2131 -9.4413 3.2387 39 1 -0.8767 -9.8673 5.5651 40 1 0.2121 -8.5563 6.0789 41 1 -0.2699 -10.1005 7.9581 42 1 1.4538 -10.1496 7.5163 43 1 -0.6766 -12.1336 6.5988 44 1 0.5538 -12.4364 7.8486 45 1 1.4156 -14.2511 6.3812 46 1 1.7386 -11.8273 3.7826 47 1 0.0149 -11.7782 4.2244 48 1 2.9026 -4.2548 1.5602 49 1 2.3043 -5.6067 0.5677 50 1 1.0401 -4.0597 -0.8520 51 1 2.7331 -3.5124 -0.7696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610402735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:43 Heat of formation + Delta-G solvation = -111.243787 kcal Electronic energy + Delta-G solvation = -27977.762351 eV Core-core repulsion = 24103.232481 eV Total energy + Delta-G solvation = -3874.529870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26848 -40.12012 -39.05978 -37.18548 -35.96632 -35.27146 -33.89816 -32.37169 -31.68340 -31.02211 -30.29668 -27.27810 -26.28257 -23.98115 -23.67552 -23.34573 -22.33024 -21.77592 -21.05253 -20.79111 -19.39675 -18.63589 -17.94547 -17.49365 -16.83285 -16.57922 -16.32636 -15.93239 -15.70840 -15.41903 -15.35277 -15.15448 -15.12126 -14.75790 -14.67666 -14.38371 -14.03068 -13.84164 -13.55964 -13.21353 -13.18546 -13.01093 -12.92517 -12.61978 -12.50609 -12.32335 -12.21493 -12.00069 -11.97684 -11.86117 -11.62443 -11.54733 -11.50979 -11.38765 -11.22813 -11.11105 -10.65930 -10.56196 -10.29012 -9.70548 -8.70339 -7.87242 -5.33061 1.48054 1.49938 1.60872 1.72050 2.20462 2.52475 3.15148 3.28591 3.43729 3.63324 3.67760 3.70688 3.91942 4.05296 4.08231 4.11949 4.22762 4.29242 4.36074 4.45133 4.47622 4.49141 4.59278 4.65663 4.66366 4.74160 4.80411 4.83961 4.88679 5.04225 5.07961 5.08317 5.14525 5.17355 5.19112 5.22598 5.27220 5.30568 5.33619 5.47363 5.49312 5.56720 5.62678 5.65666 5.71226 6.07742 6.39770 6.91588 7.15028 7.17243 7.64843 7.84399 8.37693 9.20068 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.037448 B = 0.001901 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.525925 B =14724.332595 C =15011.061175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.640 6.640 16 N -0.729 5.729 17 C 0.146 3.854 18 C -0.079 4.079 19 H 0.095 0.905 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.149 4.149 23 C 0.107 3.893 24 H 0.067 0.933 25 O -0.591 6.591 26 C -0.108 4.108 27 C -0.123 4.123 28 C 0.144 3.856 29 H 0.251 0.749 30 H -0.007 1.007 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.410 0.590 36 H 0.412 0.588 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.394 0.606 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.005 0.995 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -23.491 20.608 31.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.166 4.166 12 C 0.076 3.924 13 N -0.381 5.381 14 C 0.398 3.602 15 O -0.521 6.521 16 N -0.386 5.386 17 C 0.021 3.979 18 C -0.098 4.098 19 H 0.113 0.887 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.187 4.187 23 C 0.048 3.952 24 H 0.085 0.915 25 O -0.399 6.399 26 C -0.146 4.146 27 C -0.163 4.163 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.012 0.988 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.246 0.754 36 H 0.249 0.751 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.244 0.756 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.023 0.977 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.109 -23.535 19.029 30.425 hybrid contribution 0.280 1.041 0.605 1.236 sum 3.389 -22.494 19.634 30.049 Atomic orbital electron populations 1.70192 1.06708 1.25888 1.55428 1.25836 0.96063 1.01572 1.01160 0.85178 0.78606 0.79682 0.76773 1.19054 1.22187 1.21369 1.19558 0.92871 0.85789 1.40973 0.91462 1.44357 1.35952 1.02174 1.50728 1.20581 0.87693 0.97787 0.88790 1.22249 1.01990 0.93515 0.98873 1.20469 0.96833 0.87762 0.87362 1.45106 1.72677 1.04281 1.15998 1.16182 0.78253 0.81647 0.84153 1.90901 1.55607 1.78851 1.26750 1.44911 1.73278 1.06512 1.13902 1.21174 1.00597 0.78288 0.97809 1.21207 1.01418 0.93522 0.93671 0.88657 1.21657 0.98542 1.00675 0.94647 1.21466 1.02903 0.93675 0.97062 1.22255 0.99949 0.97414 0.99056 1.21790 0.98269 0.80493 0.94618 0.91511 1.86483 1.94029 1.17745 1.41653 1.21412 1.02508 0.93274 0.97382 1.22177 0.97984 0.98404 0.97770 1.20966 0.97300 0.86019 0.93917 0.94016 0.98844 0.91746 0.90501 0.90961 0.92879 0.75360 0.75140 0.92877 0.93096 0.92533 0.90732 0.90933 0.90565 0.92302 0.90316 0.75621 0.91614 0.92067 0.91446 0.92534 0.97681 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.42 11.20 21.65 0.24 -55.18 16 2 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 3 Si 0.97 44.57 29.59 68.60 2.03 46.60 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.26 -14.44 9.58 84.03 0.81 -13.64 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.61 -31.02 2.99 -699.11 -2.09 -33.12 16 10 C 0.18 8.55 5.30 86.36 0.46 9.01 16 11 C -0.13 -4.50 5.55 30.67 0.17 -4.33 16 12 C 0.18 6.28 2.41 45.02 0.11 6.39 16 13 N -0.73 -19.11 5.08 -457.70 -2.33 -21.44 16 14 C 0.70 20.13 8.53 179.05 1.53 21.66 16 15 O -0.64 -25.24 16.01 -3.97 -0.06 -25.31 16 16 N -0.73 -13.73 5.29 -478.54 -2.53 -16.26 16 17 C 0.15 2.66 5.07 86.38 0.44 3.09 16 18 C -0.08 -0.89 2.22 -10.80 -0.02 -0.91 16 19 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 20 C -0.12 -1.13 5.08 30.59 0.16 -0.97 16 21 C -0.11 -0.79 5.92 30.60 0.18 -0.61 16 22 C -0.15 -1.21 5.55 30.60 0.17 -1.04 16 23 C 0.11 1.11 3.47 30.60 0.11 1.22 16 24 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 25 O -0.59 -7.59 13.32 -148.98 -1.98 -9.57 16 26 C -0.11 -1.42 4.85 30.60 0.15 -1.27 16 27 C -0.12 -4.51 5.65 30.67 0.17 -4.33 16 28 C 0.14 6.39 6.52 86.37 0.56 6.95 16 29 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 30 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 31 H 0.06 3.44 6.06 -2.39 -0.01 3.43 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.05 2.18 7.58 -2.38 -0.02 2.16 16 35 H 0.41 7.73 8.62 -92.71 -0.80 6.93 16 36 H 0.41 4.78 7.67 -92.71 -0.71 4.07 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.62 7.18 -2.39 -0.02 0.60 16 41 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.39 1.64 9.08 -74.06 -0.67 0.96 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 48 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 49 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 Total: -1.00 -74.40 394.14 -2.58 -76.98 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -1.25 Total: 18.50 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 5.40 Total: 18.80 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -6.71 Total: -126.00 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -2.05 Total: -34.88 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -74.40 -2.58 -76.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610402735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.264 kcal (2) G-P(sol) polarization free energy of solvation -74.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds