Wall clock time and date at job start Fri Apr 10 2020 18:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99471 * 2 1 4 4 H 1.48499 * 109.46840 * 270.00222 * 3 2 1 5 5 H 1.48497 * 109.47073 * 30.00043 * 3 2 1 6 6 H 1.48497 * 109.47061 * 150.00605 * 3 2 1 7 7 C 1.38807 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99753 * 197.35803 * 7 2 1 9 9 N 1.36933 * 120.00225 * 17.36087 * 7 2 1 10 10 C 1.46925 * 120.63070 * 27.68503 * 9 7 2 11 11 C 1.53187 * 108.77683 * 126.37543 * 10 9 7 12 12 C 1.53034 * 109.31565 * 54.63256 * 11 10 9 13 13 N 1.46495 * 109.46458 * 178.61545 * 12 11 10 14 14 C 1.34776 * 120.00327 * 205.00371 * 13 12 11 15 15 O 1.21582 * 120.00348 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99785 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99798 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.47004 * 325.00125 * 17 16 14 19 19 C 1.52998 * 109.47165 * 84.99679 * 17 16 14 20 20 C 1.53004 * 109.46854 * 60.00048 * 19 17 16 21 21 C 1.53000 * 109.47129 * 59.99995 * 20 19 17 22 22 H 1.09006 * 109.47232 * 59.99690 * 21 20 19 23 23 C 1.52997 * 109.47125 * 179.97438 * 21 20 19 24 24 O 1.42899 * 109.47135 * 294.99762 * 23 21 20 25 25 C 1.52995 * 109.47205 * 300.00127 * 21 20 19 26 26 C 1.52997 * 109.47411 * 59.99768 * 25 21 20 27 27 C 1.53040 * 109.53994 * 298.64105 * 12 11 10 28 28 C 1.46926 * 120.63279 * 207.66953 * 9 7 2 29 29 H 0.96996 * 120.00742 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58932 * 6.58383 * 10 9 7 31 31 H 1.09001 * 109.58746 * 246.15922 * 10 9 7 32 32 H 1.09002 * 109.50081 * 174.58911 * 11 10 9 33 33 H 1.09007 * 109.49448 * 294.68455 * 11 10 9 34 34 H 1.08998 * 109.45901 * 58.65760 * 12 11 10 35 35 H 0.97008 * 119.99971 * 24.99921 * 13 12 11 36 36 H 0.96995 * 120.00294 * 0.02562 * 16 14 13 37 37 H 1.08998 * 109.46903 * 179.97438 * 19 17 16 38 38 H 1.08992 * 109.47514 * 300.00232 * 19 17 16 39 39 H 1.08991 * 109.47196 * 300.00213 * 20 19 17 40 40 H 1.09000 * 109.46760 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47046 * 55.00225 * 23 21 20 42 42 H 1.09005 * 109.47053 * 175.00190 * 23 21 20 43 43 H 0.96708 * 113.99774 * 179.97438 * 24 23 21 44 44 H 1.09005 * 109.47191 * 299.99905 * 25 21 20 45 45 H 1.09003 * 109.47313 * 180.02562 * 25 21 20 46 46 H 1.09003 * 109.47330 * 179.97438 * 26 25 21 47 47 H 1.09000 * 109.47475 * 60.00202 * 26 25 21 48 48 H 1.09004 * 109.49747 * 181.31776 * 27 12 11 49 49 H 1.09003 * 109.49329 * 301.40911 * 27 12 11 50 50 H 1.08997 * 109.58883 * 113.83602 * 28 9 7 51 51 H 1.09003 * 109.58368 * 353.41089 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2785 9 7 1.3726 -2.3608 -0.3549 10 6 0.2282 -2.3339 -1.2760 11 6 0.5017 -3.3029 -2.4305 12 6 0.8201 -4.6884 -1.8640 13 7 1.0497 -5.6255 -2.9663 14 6 0.8498 -6.9455 -2.7814 15 8 0.4793 -7.3586 -1.6997 16 7 1.0616 -7.8077 -3.7955 17 6 0.8449 -9.2425 -3.5944 18 1 1.1278 -9.5136 -2.5772 19 6 -0.6326 -9.5713 -3.8176 20 6 -1.0297 -9.1907 -5.2453 21 6 -0.1758 -9.9798 -6.2397 22 1 -0.3370 -11.0475 -6.0901 23 6 -0.5733 -9.5997 -7.6674 24 8 -1.9189 -10.0132 -7.9133 25 6 1.3017 -9.6511 -6.0165 26 6 1.6988 -10.0316 -4.5888 27 6 2.0755 -4.6089 -0.9924 28 6 1.8198 -3.6548 0.1785 29 1 -0.4851 0.8399 0.0004 30 1 0.0985 -1.3253 -1.6683 31 1 -0.6739 -2.6413 -0.7470 32 1 -0.3790 -3.3648 -3.0699 33 1 1.3503 -2.9443 -3.0131 34 1 -0.0190 -5.0358 -1.2612 35 1 1.3456 -5.2960 -3.8294 36 1 1.3583 -7.4782 -4.6582 37 1 -0.7937 -10.6390 -3.6683 38 1 -1.2410 -9.0092 -3.1092 39 1 -0.8684 -8.1233 -5.3949 40 1 -2.0822 -9.4254 -5.4044 41 1 -0.4969 -8.5194 -7.7904 42 1 0.0935 -10.0940 -8.3741 43 1 -2.2387 -9.8035 -8.8015 44 1 1.4630 -8.5835 -6.1662 45 1 1.9101 -10.2129 -6.7253 46 1 2.7516 -9.7979 -4.4300 47 1 1.5376 -11.0992 -4.4391 48 1 2.3151 -5.6004 -0.6082 49 1 2.9093 -4.2380 -1.5886 50 1 1.0475 -4.0697 0.8260 51 1 2.7404 -3.5176 0.7458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610707271.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:03 Heat of formation + Delta-G solvation = -81.717990 kcal Electronic energy + Delta-G solvation = -28687.942011 eV Core-core repulsion = 24814.692476 eV Total energy + Delta-G solvation = -3873.249536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.44809 -38.98995 -37.45353 -36.69699 -34.31876 -33.77607 -32.11716 -31.09506 -30.69282 -29.93075 -29.03959 -25.77258 -24.85946 -22.97726 -22.43139 -22.09667 -21.39754 -20.79502 -19.59352 -19.18531 -18.18116 -17.66792 -16.77964 -16.14933 -15.79782 -15.36562 -15.14692 -14.83264 -14.47875 -14.45092 -14.20298 -13.87842 -13.58651 -13.49857 -13.22188 -12.96679 -12.83154 -12.53387 -12.45591 -12.38718 -12.17925 -11.78579 -11.47397 -11.41853 -11.09459 -10.87736 -10.80701 -10.72219 -10.60784 -10.47294 -10.43251 -10.22796 -10.20434 -10.00234 -9.93294 -9.70685 -9.50319 -9.04799 -8.55037 -8.39974 -6.66786 -5.77535 -3.19218 2.88285 3.38590 3.45482 3.45760 3.47004 3.77350 4.31711 4.40487 4.42354 4.51078 4.59292 4.70993 4.92962 4.97698 5.11532 5.14419 5.20565 5.29265 5.33252 5.36599 5.44510 5.45654 5.54768 5.62744 5.66047 5.74291 5.78708 5.87716 5.94900 6.06701 6.12029 6.12528 6.16878 6.33463 6.41241 6.54632 6.58777 6.63434 6.66087 6.84371 6.97283 7.03521 7.18759 7.23080 7.35305 7.64691 7.81219 8.23392 8.46495 8.85223 9.22799 9.86266 10.43361 11.31375 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.002301 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.738296 B =12165.845467 C =12637.810161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.741 5.741 14 C 0.701 3.299 15 O -0.591 6.591 16 N -0.745 5.745 17 C 0.165 3.835 18 H 0.088 0.912 19 C -0.132 4.132 20 C -0.107 4.107 21 C -0.088 4.088 22 H 0.077 0.923 23 C 0.079 3.921 24 O -0.573 6.573 25 C -0.113 4.113 26 C -0.125 4.125 27 C -0.139 4.139 28 C 0.147 3.853 29 H 0.254 0.746 30 H 0.092 0.908 31 H 0.021 0.979 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.389 0.611 36 H 0.390 0.610 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.378 0.622 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.021 0.979 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 -20.621 -17.528 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.066 3.934 13 N -0.394 5.394 14 C 0.401 3.599 15 O -0.469 6.469 16 N -0.401 5.401 17 C 0.059 3.941 18 H 0.106 0.894 19 C -0.171 4.171 20 C -0.144 4.144 21 C -0.106 4.106 22 H 0.096 0.904 23 C 0.001 3.999 24 O -0.378 6.378 25 C -0.151 4.151 26 C -0.163 4.163 27 C -0.179 4.179 28 C 0.020 3.980 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.222 0.778 36 H 0.225 0.775 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.038 0.962 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.852 -21.052 -15.842 26.360 hybrid contribution 0.681 1.398 -1.533 2.183 sum 1.533 -19.654 -17.375 26.278 Atomic orbital electron populations 1.70030 1.05229 1.25494 1.54060 1.25044 0.95291 0.98409 1.01030 0.86282 0.79123 0.83699 0.77628 1.21513 1.21789 1.20454 1.19209 0.92742 0.84854 1.41205 0.91618 1.44106 1.35786 1.01521 1.50176 1.20747 0.88886 0.98019 0.87573 1.22536 1.00398 0.94797 1.00853 1.20881 0.98255 0.87701 0.86612 1.45551 1.72906 1.05033 1.15911 1.16045 0.78417 0.81290 0.84106 1.90910 1.53594 1.77515 1.24884 1.45273 1.74351 1.06684 1.13833 1.20720 0.94511 0.79028 0.99809 0.89426 1.21958 0.96548 1.01473 0.97124 1.21456 0.99671 0.99620 0.93663 1.21179 0.94819 1.01298 0.93315 0.90421 1.22250 0.83031 0.98023 0.96559 1.86491 1.29513 1.84400 1.37379 1.21507 0.95098 1.01471 0.97026 1.21804 0.99824 1.00567 0.94089 1.22385 0.97270 0.99453 0.98801 1.20881 0.97818 0.86507 0.92752 0.93620 0.89026 0.96108 0.92841 0.92311 0.90144 0.77816 0.77532 0.91335 0.91045 0.92109 0.91426 0.93684 0.93864 0.77536 0.91906 0.91513 0.91013 0.90304 0.92727 0.92552 0.96150 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.99 2.99 -172.33 -0.52 -15.51 16 10 C 0.17 4.14 5.31 -3.71 -0.02 4.12 16 11 C -0.15 -2.71 5.55 -26.62 -0.15 -2.86 16 12 C 0.17 3.03 2.41 -67.89 -0.16 2.87 16 13 N -0.74 -10.64 5.08 -58.64 -0.30 -10.93 16 14 C 0.70 10.54 8.49 -86.92 -0.74 9.80 16 15 O -0.59 -11.46 15.67 5.29 0.08 -11.38 16 16 N -0.74 -7.88 4.24 -58.67 -0.25 -8.13 16 17 C 0.16 1.60 2.78 -67.93 -0.19 1.41 16 18 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 19 C -0.13 -1.31 5.60 -26.73 -0.15 -1.46 16 20 C -0.11 -0.96 4.94 -26.73 -0.13 -1.09 16 21 C -0.09 -0.62 2.43 -90.62 -0.22 -0.84 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 C 0.08 0.50 6.43 37.16 0.24 0.74 16 24 O -0.57 -4.32 13.19 -35.23 -0.46 -4.79 16 25 C -0.11 -0.65 5.03 -26.74 -0.13 -0.79 16 26 C -0.12 -0.83 5.61 -26.73 -0.15 -0.98 16 27 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 28 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.09 2.41 6.03 -51.93 -0.31 2.10 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 35 H 0.39 4.46 8.62 -40.82 -0.35 4.11 16 36 H 0.39 3.16 6.88 -40.82 -0.28 2.88 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.58 7.60 -51.93 -0.39 0.19 16 40 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 41 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.38 1.23 9.12 45.56 0.42 1.64 16 44 H 0.06 0.34 6.51 -51.93 -0.34 0.00 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -33.39 390.38 -10.52 -43.90 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.34 Total: 5.67 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.21 Total: 4.29 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.44 Total: -60.20 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.38 Total: -16.17 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.39 -10.52 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610707271.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.816 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds