Wall clock time and date at job start Fri Apr 10 2020 18:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99471 * 2 1 4 4 H 1.48499 * 109.46840 * 270.00222 * 3 2 1 5 5 H 1.48497 * 109.47073 * 30.00043 * 3 2 1 6 6 H 1.48497 * 109.47061 * 150.00605 * 3 2 1 7 7 C 1.38807 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99753 * 197.35803 * 7 2 1 9 9 N 1.36933 * 120.00225 * 17.36087 * 7 2 1 10 10 C 1.46925 * 120.63070 * 27.68503 * 9 7 2 11 11 C 1.53187 * 108.77683 * 126.37543 * 10 9 7 12 12 C 1.53034 * 109.31565 * 54.63256 * 11 10 9 13 13 N 1.46495 * 109.46458 * 178.61545 * 12 11 10 14 14 C 1.34776 * 120.00327 * 205.00371 * 13 12 11 15 15 O 1.21582 * 120.00348 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99785 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99798 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.47004 * 325.00125 * 17 16 14 19 19 C 1.52998 * 109.47165 * 84.99679 * 17 16 14 20 20 C 1.53004 * 109.46854 * 60.00048 * 19 17 16 21 21 C 1.53000 * 109.47129 * 59.99995 * 20 19 17 22 22 H 1.09006 * 109.47232 * 59.99690 * 21 20 19 23 23 C 1.52997 * 109.47125 * 179.97438 * 21 20 19 24 24 O 1.42899 * 109.47135 * 294.99762 * 23 21 20 25 25 C 1.52995 * 109.47205 * 300.00127 * 21 20 19 26 26 C 1.52997 * 109.47411 * 59.99768 * 25 21 20 27 27 C 1.53040 * 109.53994 * 298.64105 * 12 11 10 28 28 C 1.46926 * 120.63279 * 207.66953 * 9 7 2 29 29 H 0.96996 * 120.00742 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58932 * 6.58383 * 10 9 7 31 31 H 1.09001 * 109.58746 * 246.15922 * 10 9 7 32 32 H 1.09002 * 109.50081 * 174.58911 * 11 10 9 33 33 H 1.09007 * 109.49448 * 294.68455 * 11 10 9 34 34 H 1.08998 * 109.45901 * 58.65760 * 12 11 10 35 35 H 0.97008 * 119.99971 * 24.99921 * 13 12 11 36 36 H 0.96995 * 120.00294 * 0.02562 * 16 14 13 37 37 H 1.08998 * 109.46903 * 179.97438 * 19 17 16 38 38 H 1.08992 * 109.47514 * 300.00232 * 19 17 16 39 39 H 1.08991 * 109.47196 * 300.00213 * 20 19 17 40 40 H 1.09000 * 109.46760 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47046 * 55.00225 * 23 21 20 42 42 H 1.09005 * 109.47053 * 175.00190 * 23 21 20 43 43 H 0.96708 * 113.99774 * 179.97438 * 24 23 21 44 44 H 1.09005 * 109.47191 * 299.99905 * 25 21 20 45 45 H 1.09003 * 109.47313 * 180.02562 * 25 21 20 46 46 H 1.09003 * 109.47330 * 179.97438 * 26 25 21 47 47 H 1.09000 * 109.47475 * 60.00202 * 26 25 21 48 48 H 1.09004 * 109.49747 * 181.31776 * 27 12 11 49 49 H 1.09003 * 109.49329 * 301.40911 * 27 12 11 50 50 H 1.08997 * 109.58883 * 113.83602 * 28 9 7 51 51 H 1.09003 * 109.58368 * 353.41089 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2785 9 7 1.3726 -2.3608 -0.3549 10 6 0.2282 -2.3339 -1.2760 11 6 0.5017 -3.3029 -2.4305 12 6 0.8201 -4.6884 -1.8640 13 7 1.0497 -5.6255 -2.9663 14 6 0.8498 -6.9455 -2.7814 15 8 0.4793 -7.3586 -1.6997 16 7 1.0616 -7.8077 -3.7955 17 6 0.8449 -9.2425 -3.5944 18 1 1.1278 -9.5136 -2.5772 19 6 -0.6326 -9.5713 -3.8176 20 6 -1.0297 -9.1907 -5.2453 21 6 -0.1758 -9.9798 -6.2397 22 1 -0.3370 -11.0475 -6.0901 23 6 -0.5733 -9.5997 -7.6674 24 8 -1.9189 -10.0132 -7.9133 25 6 1.3017 -9.6511 -6.0165 26 6 1.6988 -10.0316 -4.5888 27 6 2.0755 -4.6089 -0.9924 28 6 1.8198 -3.6548 0.1785 29 1 -0.4851 0.8399 0.0004 30 1 0.0985 -1.3253 -1.6683 31 1 -0.6739 -2.6413 -0.7470 32 1 -0.3790 -3.3648 -3.0699 33 1 1.3503 -2.9443 -3.0131 34 1 -0.0190 -5.0358 -1.2612 35 1 1.3456 -5.2960 -3.8294 36 1 1.3583 -7.4782 -4.6582 37 1 -0.7937 -10.6390 -3.6683 38 1 -1.2410 -9.0092 -3.1092 39 1 -0.8684 -8.1233 -5.3949 40 1 -2.0822 -9.4254 -5.4044 41 1 -0.4969 -8.5194 -7.7904 42 1 0.0935 -10.0940 -8.3741 43 1 -2.2387 -9.8035 -8.8015 44 1 1.4630 -8.5835 -6.1662 45 1 1.9101 -10.2129 -6.7253 46 1 2.7516 -9.7979 -4.4300 47 1 1.5376 -11.0992 -4.4391 48 1 2.3151 -5.6004 -0.6082 49 1 2.9093 -4.2380 -1.5886 50 1 1.0475 -4.0697 0.8260 51 1 2.7404 -3.5176 0.7458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610707271.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:02 Heat of formation + Delta-G solvation = -105.975287 kcal Electronic energy + Delta-G solvation = -28688.993887 eV Core-core repulsion = 24814.692476 eV Total energy + Delta-G solvation = -3874.301411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.48363 -39.99044 -38.87919 -37.42558 -35.93369 -34.74378 -33.81899 -31.99764 -31.73402 -31.49426 -30.51942 -26.96848 -26.18790 -24.06710 -23.78236 -23.57262 -22.22775 -21.91814 -21.09451 -20.13943 -19.46496 -18.63041 -18.16531 -17.30662 -16.80449 -16.61356 -16.27192 -16.02367 -15.73193 -15.37381 -15.30560 -15.24053 -15.08490 -14.77841 -14.49578 -14.30220 -14.05139 -13.86418 -13.40860 -13.22548 -13.11573 -13.02908 -12.91321 -12.59465 -12.52862 -12.37459 -12.22594 -12.07271 -12.00314 -11.86523 -11.55650 -11.49633 -11.37618 -11.23921 -11.16102 -11.04046 -10.75874 -10.55499 -10.20635 -9.68074 -8.71853 -7.87461 -5.33031 1.49225 1.49725 1.59400 1.76820 2.24174 2.52342 3.25966 3.33691 3.38683 3.66873 3.74384 3.80309 3.91421 3.98090 4.08275 4.12059 4.34702 4.35544 4.45844 4.47058 4.49303 4.54737 4.57656 4.65734 4.73648 4.77926 4.82213 4.83301 4.86277 5.01401 5.06120 5.07640 5.13417 5.16485 5.17951 5.21145 5.29543 5.31216 5.45572 5.47275 5.50843 5.63005 5.65004 5.69254 5.70458 6.10696 6.38965 6.94551 7.14360 7.19743 7.68850 7.83916 8.37130 9.19771 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.002301 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.738296 B =12165.845467 C =12637.810161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.127 4.127 12 C 0.182 3.818 13 N -0.728 5.728 14 C 0.699 3.301 15 O -0.638 6.638 16 N -0.723 5.723 17 C 0.163 3.837 18 H 0.064 0.936 19 C -0.129 4.129 20 C -0.100 4.100 21 C -0.085 4.085 22 H 0.073 0.927 23 C 0.077 3.923 24 O -0.597 6.597 25 C -0.108 4.108 26 C -0.116 4.116 27 C -0.122 4.122 28 C 0.144 3.856 29 H 0.251 0.749 30 H 0.064 0.936 31 H -0.007 1.007 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.408 0.592 36 H 0.407 0.593 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.394 0.606 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.005 0.995 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.267 -21.520 -20.291 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.166 4.166 12 C 0.076 3.924 13 N -0.383 5.383 14 C 0.399 3.601 15 O -0.519 6.519 16 N -0.380 5.380 17 C 0.058 3.942 18 H 0.082 0.918 19 C -0.168 4.168 20 C -0.137 4.137 21 C -0.103 4.103 22 H 0.092 0.908 23 C 0.000 4.000 24 O -0.405 6.405 25 C -0.146 4.146 26 C -0.154 4.154 27 C -0.162 4.162 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.011 0.989 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.244 0.756 36 H 0.245 0.755 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.244 0.756 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.085 0.915 50 H 0.023 0.977 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.899 -21.984 -18.691 29.000 hybrid contribution -0.014 1.597 -0.627 1.716 sum 2.885 -20.387 -19.317 28.233 Atomic orbital electron populations 1.70193 1.06728 1.25965 1.55382 1.25829 0.96050 1.01591 1.01166 0.85223 0.77972 0.79280 0.77695 1.20812 1.22357 1.19421 1.19535 0.93036 0.85877 1.40805 0.91405 1.44362 1.35910 1.02054 1.50918 1.20571 0.87657 0.97855 0.88696 1.22246 1.01872 0.93630 0.98895 1.20448 0.96806 0.87899 0.87199 1.45129 1.72883 1.04443 1.15817 1.16202 0.78086 0.81592 0.84244 1.90890 1.55590 1.78272 1.27143 1.45095 1.72905 1.06566 1.13472 1.20813 0.94934 0.78633 0.99837 0.91810 1.21898 0.96235 1.01578 0.97049 1.21370 0.99270 0.99618 0.93491 1.21160 0.95347 1.00560 0.93261 0.90847 1.22307 0.82920 0.98537 0.96259 1.86447 1.30308 1.84712 1.39064 1.21499 0.94191 1.02296 0.96601 1.21768 0.99437 1.00562 0.93633 1.22169 0.97914 0.98454 0.97686 1.20968 0.97264 0.85957 0.93990 0.94012 0.91723 0.98933 0.90691 0.91009 0.93004 0.75560 0.75536 0.90307 0.94590 0.92647 0.93067 0.93193 0.92010 0.75610 0.91178 0.89346 0.90089 0.89152 0.92482 0.91482 0.97680 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.72 11.19 21.65 0.24 -55.48 16 2 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 3 Si 0.97 44.69 29.59 68.60 2.03 46.72 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 8 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 9 N -0.61 -31.23 2.99 -699.13 -2.09 -33.32 16 10 C 0.18 8.67 5.31 86.36 0.46 9.13 16 11 C -0.13 -4.58 5.55 30.67 0.17 -4.41 16 12 C 0.18 6.40 2.41 45.02 0.11 6.51 16 13 N -0.73 -19.64 5.08 -457.71 -2.33 -21.96 16 14 C 0.70 20.39 8.49 179.05 1.52 21.92 16 15 O -0.64 -25.11 15.67 -3.97 -0.06 -25.17 16 16 N -0.72 -14.09 4.24 -457.81 -1.94 -16.03 16 17 C 0.16 2.99 2.78 44.99 0.13 3.12 16 18 H 0.06 1.51 7.58 -2.38 -0.02 1.50 16 19 C -0.13 -2.54 5.60 30.60 0.17 -2.37 16 20 C -0.10 -1.70 4.94 30.60 0.15 -1.55 16 21 C -0.08 -0.99 2.43 -10.80 -0.03 -1.01 16 22 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 23 C 0.08 0.77 6.43 71.98 0.46 1.24 16 24 O -0.60 -7.97 13.19 -148.98 -1.97 -9.94 16 25 C -0.11 -0.85 5.03 30.59 0.15 -0.69 16 26 C -0.12 -1.21 5.61 30.59 0.17 -1.04 16 27 C -0.12 -4.49 5.65 30.67 0.17 -4.32 16 28 C 0.14 6.43 6.52 86.36 0.56 6.99 16 29 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.06 3.49 6.03 -2.39 -0.01 3.47 16 31 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 35 H 0.41 8.08 8.62 -92.70 -0.80 7.28 16 36 H 0.41 5.33 6.88 -92.71 -0.64 4.70 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.99 7.60 -2.39 -0.02 0.97 16 40 H 0.05 1.04 7.82 -2.39 -0.02 1.02 16 41 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.39 1.87 9.12 -74.05 -0.68 1.19 16 44 H 0.07 0.47 6.51 -2.38 -0.02 0.45 16 45 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 51 H 0.06 2.50 7.93 -2.39 -0.02 2.49 16 Total: -1.00 -74.72 390.38 -1.87 -76.59 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -1.18 Total: 21.26 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.43 Total: 17.33 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -6.12 Total: -126.79 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -2.03 Total: -35.11 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -74.72 -1.87 -76.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610707271.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.387 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds