Wall clock time and date at job start Fri Apr 10 2020 18:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47214 * 2 1 4 4 O 1.42903 * 109.47186 * 240.00125 * 2 1 3 5 5 C 1.52999 * 109.47204 * 120.00413 * 2 1 3 6 6 H 1.09004 * 109.99691 * 66.05442 * 5 2 1 7 7 C 1.54324 * 109.88377 * 304.95849 * 5 2 1 8 8 C 1.55159 * 102.94207 * 218.39238 * 7 5 2 9 9 C 1.54692 * 101.67710 * 35.33090 * 8 7 5 10 10 N 1.47023 * 109.88288 * 187.14932 * 5 2 1 11 11 C 1.34783 * 125.64630 * 298.32259 * 10 5 2 12 12 O 1.21582 * 120.00099 * 354.53116 * 11 10 5 13 13 N 1.34771 * 119.99852 * 174.53781 * 11 10 5 14 14 C 1.46500 * 120.00175 * 179.97438 * 13 11 10 15 15 C 1.53040 * 109.46016 * 154.99822 * 14 13 11 16 16 C 1.53191 * 109.33689 * 181.36981 * 15 14 13 17 17 N 1.46935 * 108.77515 * 305.41311 * 16 15 14 18 18 C 1.36937 * 120.60453 * 233.53738 * 17 16 15 19 19 H 1.07996 * 120.00354 * 28.08807 * 18 17 16 20 20 C 1.38807 * 119.99622 * 208.08881 * 18 17 16 21 21 N 1.31625 * 120.00125 * 14.20773 * 20 18 17 22 22 Si 1.86802 * 120.00046 * 194.20206 * 20 18 17 23 23 H 1.48510 * 109.46730 * 90.00367 * 22 20 18 24 24 H 1.48495 * 109.47116 * 210.00032 * 22 20 18 25 25 H 1.48498 * 109.47225 * 330.00332 * 22 20 18 26 26 C 1.46926 * 118.76119 * 53.55497 * 17 16 15 27 27 C 1.53037 * 109.45951 * 275.06568 * 14 13 11 28 28 H 1.08999 * 109.47102 * 306.58725 * 1 2 3 29 29 H 1.08998 * 109.47422 * 66.59088 * 1 2 3 30 30 H 1.08997 * 109.46972 * 186.58689 * 1 2 3 31 31 H 1.09001 * 109.46993 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47111 * 300.00408 * 3 2 1 33 33 H 1.09006 * 109.46479 * 60.00488 * 3 2 1 34 34 H 0.96702 * 114.00267 * 300.00808 * 4 2 1 35 35 H 1.09003 * 110.71642 * 336.75147 * 7 5 2 36 36 H 1.08990 * 110.71857 * 100.02189 * 7 5 2 37 37 H 1.08994 * 111.00254 * 153.57435 * 8 7 5 38 38 H 1.08998 * 111.00129 * 277.42655 * 8 7 5 39 39 H 1.09004 * 110.38962 * 204.36455 * 9 8 7 40 40 H 1.09004 * 110.23243 * 82.11741 * 9 8 7 41 41 H 0.97007 * 120.00307 * 359.97438 * 13 11 10 42 42 H 1.09002 * 109.45813 * 35.02300 * 14 13 11 43 43 H 1.08999 * 109.49668 * 301.33643 * 15 14 13 44 44 H 1.08998 * 109.49834 * 61.40677 * 15 14 13 45 45 H 1.09002 * 109.58891 * 65.17231 * 16 15 14 46 46 H 1.09003 * 109.58545 * 185.59083 * 16 15 14 47 47 H 0.97006 * 119.99771 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.58502 * 186.62472 * 26 17 16 49 49 H 1.09000 * 109.58572 * 66.19937 * 26 17 16 50 50 H 1.08996 * 109.49913 * 298.56232 * 27 14 13 51 51 H 1.09001 * 109.49917 * 58.63264 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7723 -1.7771 1.2054 7 6 1.4310 -0.0774 2.5125 8 6 2.6088 -0.1112 3.5220 9 6 3.8226 0.1361 2.5954 10 7 3.5001 -0.5794 1.3475 11 6 4.3957 -1.0333 0.4483 12 8 4.0234 -1.7031 -0.4956 13 7 5.7039 -0.7450 0.5957 14 6 6.6775 -1.2388 -0.3812 15 6 7.9059 -0.3260 -0.3831 16 6 8.9071 -0.8251 -1.4296 17 7 9.2055 -2.2387 -1.1622 18 6 10.4996 -2.6635 -1.0207 19 1 11.2546 -1.9828 -0.6559 20 6 10.8411 -3.9689 -1.3461 21 7 10.0089 -4.7123 -2.0443 22 14 12.4816 -4.6708 -0.7933 23 1 12.3239 -5.3073 0.5391 24 1 12.9421 -5.6852 -1.7752 25 1 13.4829 -3.5777 -0.7044 26 6 8.0896 -3.1878 -1.0499 27 6 7.0980 -2.6620 -0.0072 28 1 -0.3633 0.6125 0.8252 29 1 -0.3634 0.4083 -0.9430 30 1 -0.3633 -1.0209 0.1179 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.7209 -1.5952 -1.2331 35 1 1.1240 0.9492 2.3123 36 1 0.5914 -0.6675 2.8795 37 1 2.5118 0.6830 4.2621 38 1 2.6820 -1.0859 4.0044 39 1 4.7302 -0.2701 3.0419 40 1 3.9382 1.2026 2.4022 41 1 6.0009 -0.2104 1.3487 42 1 6.2263 -1.2426 -1.3734 43 1 7.6021 0.6921 -0.6266 44 1 8.3717 -0.3409 0.6022 45 1 8.4753 -0.7252 -2.4254 46 1 9.8242 -0.2392 -1.3664 47 1 10.2475 -5.6248 -2.2713 48 1 8.4676 -4.1609 -0.7366 49 1 7.5905 -3.2807 -2.0145 50 1 7.5718 -2.6553 0.9744 51 1 6.2193 -3.3064 0.0173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612628062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:05 Heat of formation + Delta-G solvation = -54.625221 kcal Electronic energy + Delta-G solvation = -29877.614291 eV Core-core repulsion = 26005.539586 eV Total energy + Delta-G solvation = -3872.074705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69235 -38.68108 -37.08093 -36.48883 -34.20167 -32.65631 -31.98110 -31.28497 -29.87919 -29.23697 -28.36396 -27.42679 -25.08322 -23.76493 -22.14344 -22.04496 -21.80874 -20.23738 -19.50168 -19.00097 -17.97709 -17.01495 -16.63750 -16.42832 -15.54720 -14.99786 -14.73964 -14.56457 -14.40097 -14.02277 -13.69926 -13.46373 -13.41321 -13.20361 -13.09807 -12.89403 -12.52987 -12.42798 -12.42273 -12.33976 -12.16159 -11.85059 -11.77951 -11.51087 -11.40458 -11.03089 -10.99948 -10.82743 -10.70688 -10.70125 -10.28683 -10.15131 -10.02623 -9.97513 -9.68399 -9.67186 -9.44926 -8.60960 -8.44157 -8.23626 -6.61975 -5.72096 -3.16991 2.74864 3.40848 3.47039 3.48696 3.57975 4.01849 4.22472 4.32860 4.45965 4.52478 4.53275 4.77912 4.81246 4.85034 5.06439 5.15351 5.31862 5.35242 5.39593 5.42274 5.47049 5.48536 5.54230 5.57084 5.64841 5.71258 5.75505 5.79163 5.91306 5.92337 5.94944 6.15332 6.19190 6.26708 6.32991 6.50621 6.57695 6.72531 6.73536 6.87809 7.01058 7.10647 7.29536 7.49587 7.78333 7.84935 7.90290 8.28857 8.51531 9.00371 9.27201 9.90044 10.46783 11.35700 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.002817 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.848288 B = 9937.769151 C =10192.803256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.116 3.884 3 C -0.132 4.132 4 O -0.532 6.532 5 C 0.134 3.866 6 H 0.072 0.928 7 C -0.129 4.129 8 C -0.131 4.131 9 C 0.098 3.902 10 N -0.633 5.633 11 C 0.721 3.279 12 O -0.563 6.563 13 N -0.741 5.741 14 C 0.171 3.829 15 C -0.138 4.138 16 C 0.149 3.851 17 N -0.594 5.594 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.173 3.827 27 C -0.145 4.145 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.375 0.625 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.386 0.614 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.057 0.943 47 H 0.254 0.746 48 H 0.092 0.908 49 H 0.020 0.980 50 H 0.050 0.950 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.817 12.559 11.850 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.074 3.926 3 C -0.189 4.189 4 O -0.338 6.338 5 C 0.029 3.971 6 H 0.090 0.910 7 C -0.167 4.167 8 C -0.169 4.169 9 C -0.025 4.025 10 N -0.373 5.373 11 C 0.423 3.577 12 O -0.438 6.438 13 N -0.395 5.395 14 C 0.067 3.933 15 C -0.178 4.178 16 C 0.022 3.978 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.047 3.953 27 C -0.186 4.186 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.223 0.777 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.219 0.781 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.038 0.962 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.038 0.962 50 H 0.069 0.931 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.678 12.416 10.851 25.674 hybrid contribution 0.658 -0.707 0.924 1.337 sum -19.020 11.709 11.776 25.249 Atomic orbital electron populations 1.22520 0.95932 1.02319 1.02757 1.21493 0.91900 0.93453 0.85794 1.21671 1.02292 0.93530 1.01451 1.86684 1.76991 1.28554 1.41544 1.22066 0.80152 0.99611 0.95311 0.91015 1.22774 0.98014 1.01855 0.94035 1.22710 0.94149 1.02880 0.97202 1.22192 0.98514 0.96791 0.85013 1.47553 1.05347 1.61909 1.22531 1.15430 0.80455 0.80124 0.81717 1.90898 1.78364 1.42607 1.31891 1.45529 1.05252 1.58095 1.30615 1.20859 0.86779 0.93984 0.91658 1.22328 0.96235 0.97448 1.01761 1.20837 0.95557 0.87337 0.94071 1.44117 1.02836 1.02164 1.82517 1.19203 0.85774 0.96293 1.36839 0.91664 1.25084 0.97784 0.98667 0.98238 1.70015 1.36473 1.08989 1.39298 0.86262 0.83601 0.78770 0.77937 1.21529 1.21757 1.20490 1.20801 0.85937 0.94797 0.93768 1.22572 0.99598 0.95233 1.01198 0.91678 0.91656 0.92387 0.91903 0.92321 0.91708 0.77736 0.90033 0.90049 0.89890 0.90580 0.90998 0.91897 0.78114 0.90100 0.92793 0.92112 0.96170 0.92453 0.93622 0.88993 0.96224 0.93077 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 8.36 37.16 0.31 -1.05 16 2 C 0.12 1.22 0.86 -90.62 -0.08 1.14 16 3 C -0.13 -1.36 8.42 37.16 0.31 -1.04 16 4 O -0.53 -7.66 10.08 -58.79 -0.59 -8.26 16 5 C 0.13 1.34 2.52 -66.95 -0.17 1.17 16 6 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.13 -0.82 5.26 -24.90 -0.13 -0.95 16 8 C -0.13 -0.81 7.07 -24.70 -0.17 -0.99 16 9 C 0.10 0.83 6.45 -2.65 -0.02 0.81 16 10 N -0.63 -7.57 2.08 -168.83 -0.35 -7.92 16 11 C 0.72 11.71 7.90 -86.92 -0.69 11.02 16 12 O -0.56 -11.21 13.41 -18.27 -0.24 -11.46 16 13 N -0.74 -11.47 5.03 -58.64 -0.30 -11.77 16 14 C 0.17 3.18 2.42 -67.89 -0.16 3.02 16 15 C -0.14 -2.42 5.55 -26.61 -0.15 -2.56 16 16 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 17 N -0.59 -15.23 3.00 -172.31 -0.52 -15.75 16 18 C -0.25 -6.99 9.60 -15.06 -0.14 -7.14 16 19 H 0.07 1.77 7.87 -52.49 -0.41 1.35 16 20 C 0.00 0.02 4.99 -17.43 -0.09 -0.07 16 21 N -0.90 -26.83 11.01 55.49 0.61 -26.22 16 22 Si 0.90 21.99 29.58 -169.99 -5.03 16.96 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.17 4.37 5.29 -3.71 -0.02 4.35 16 27 C -0.15 -3.06 5.65 -26.61 -0.15 -3.21 16 28 H 0.06 0.39 6.99 -51.93 -0.36 0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.79 7.27 -51.93 -0.38 0.41 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.49 6.36 -51.93 -0.33 0.16 16 34 H 0.37 4.84 8.74 45.56 0.40 5.24 16 35 H 0.08 0.45 5.49 -51.93 -0.29 0.17 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.59 7.53 -51.93 -0.39 0.20 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.39 4.94 7.23 -40.82 -0.29 4.65 16 42 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.09 2.58 5.96 -51.93 -0.31 2.27 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -33.55 383.59 -10.23 -43.78 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.22 Total: 7.19 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.37 Total: 7.66 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.55 Total: -61.65 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.84 Total: -19.71 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.55 -10.23 -43.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612628062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.847 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds