Wall clock time and date at job start Fri Apr 10 2020 18:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47214 * 2 1 4 4 O 1.42903 * 109.47186 * 240.00125 * 2 1 3 5 5 C 1.52999 * 109.47204 * 120.00413 * 2 1 3 6 6 H 1.09004 * 109.99691 * 66.05442 * 5 2 1 7 7 C 1.54324 * 109.88377 * 304.95849 * 5 2 1 8 8 C 1.55159 * 102.94207 * 218.39238 * 7 5 2 9 9 C 1.54692 * 101.67710 * 35.33090 * 8 7 5 10 10 N 1.47023 * 109.88288 * 187.14932 * 5 2 1 11 11 C 1.34783 * 125.64630 * 298.32259 * 10 5 2 12 12 O 1.21582 * 120.00099 * 354.53116 * 11 10 5 13 13 N 1.34771 * 119.99852 * 174.53781 * 11 10 5 14 14 C 1.46500 * 120.00175 * 179.97438 * 13 11 10 15 15 C 1.53040 * 109.46016 * 154.99822 * 14 13 11 16 16 C 1.53191 * 109.33689 * 181.36981 * 15 14 13 17 17 N 1.46935 * 108.77515 * 305.41311 * 16 15 14 18 18 C 1.36937 * 120.60453 * 233.53738 * 17 16 15 19 19 H 1.07996 * 120.00354 * 28.08807 * 18 17 16 20 20 C 1.38807 * 119.99622 * 208.08881 * 18 17 16 21 21 N 1.31625 * 120.00125 * 14.20773 * 20 18 17 22 22 Si 1.86802 * 120.00046 * 194.20206 * 20 18 17 23 23 H 1.48510 * 109.46730 * 90.00367 * 22 20 18 24 24 H 1.48495 * 109.47116 * 210.00032 * 22 20 18 25 25 H 1.48498 * 109.47225 * 330.00332 * 22 20 18 26 26 C 1.46926 * 118.76119 * 53.55497 * 17 16 15 27 27 C 1.53037 * 109.45951 * 275.06568 * 14 13 11 28 28 H 1.08999 * 109.47102 * 306.58725 * 1 2 3 29 29 H 1.08998 * 109.47422 * 66.59088 * 1 2 3 30 30 H 1.08997 * 109.46972 * 186.58689 * 1 2 3 31 31 H 1.09001 * 109.46993 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47111 * 300.00408 * 3 2 1 33 33 H 1.09006 * 109.46479 * 60.00488 * 3 2 1 34 34 H 0.96702 * 114.00267 * 300.00808 * 4 2 1 35 35 H 1.09003 * 110.71642 * 336.75147 * 7 5 2 36 36 H 1.08990 * 110.71857 * 100.02189 * 7 5 2 37 37 H 1.08994 * 111.00254 * 153.57435 * 8 7 5 38 38 H 1.08998 * 111.00129 * 277.42655 * 8 7 5 39 39 H 1.09004 * 110.38962 * 204.36455 * 9 8 7 40 40 H 1.09004 * 110.23243 * 82.11741 * 9 8 7 41 41 H 0.97007 * 120.00307 * 359.97438 * 13 11 10 42 42 H 1.09002 * 109.45813 * 35.02300 * 14 13 11 43 43 H 1.08999 * 109.49668 * 301.33643 * 15 14 13 44 44 H 1.08998 * 109.49834 * 61.40677 * 15 14 13 45 45 H 1.09002 * 109.58891 * 65.17231 * 16 15 14 46 46 H 1.09003 * 109.58545 * 185.59083 * 16 15 14 47 47 H 0.97006 * 119.99771 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.58502 * 186.62472 * 26 17 16 49 49 H 1.09000 * 109.58572 * 66.19937 * 26 17 16 50 50 H 1.08996 * 109.49913 * 298.56232 * 27 14 13 51 51 H 1.09001 * 109.49917 * 58.63264 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7723 -1.7771 1.2054 7 6 1.4310 -0.0774 2.5125 8 6 2.6088 -0.1112 3.5220 9 6 3.8226 0.1361 2.5954 10 7 3.5001 -0.5794 1.3475 11 6 4.3957 -1.0333 0.4483 12 8 4.0234 -1.7031 -0.4956 13 7 5.7039 -0.7450 0.5957 14 6 6.6775 -1.2388 -0.3812 15 6 7.9059 -0.3260 -0.3831 16 6 8.9071 -0.8251 -1.4296 17 7 9.2055 -2.2387 -1.1622 18 6 10.4996 -2.6635 -1.0207 19 1 11.2546 -1.9828 -0.6559 20 6 10.8411 -3.9689 -1.3461 21 7 10.0089 -4.7123 -2.0443 22 14 12.4816 -4.6708 -0.7933 23 1 12.3239 -5.3073 0.5391 24 1 12.9421 -5.6852 -1.7752 25 1 13.4829 -3.5777 -0.7044 26 6 8.0896 -3.1878 -1.0499 27 6 7.0980 -2.6620 -0.0072 28 1 -0.3633 0.6125 0.8252 29 1 -0.3634 0.4083 -0.9430 30 1 -0.3633 -1.0209 0.1179 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.7209 -1.5952 -1.2331 35 1 1.1240 0.9492 2.3123 36 1 0.5914 -0.6675 2.8795 37 1 2.5118 0.6830 4.2621 38 1 2.6820 -1.0859 4.0044 39 1 4.7302 -0.2701 3.0419 40 1 3.9382 1.2026 2.4022 41 1 6.0009 -0.2104 1.3487 42 1 6.2263 -1.2426 -1.3734 43 1 7.6021 0.6921 -0.6266 44 1 8.3717 -0.3409 0.6022 45 1 8.4753 -0.7252 -2.4254 46 1 9.8242 -0.2392 -1.3664 47 1 10.2475 -5.6248 -2.2713 48 1 8.4676 -4.1609 -0.7366 49 1 7.5905 -3.2807 -2.0145 50 1 7.5718 -2.6553 0.9744 51 1 6.2193 -3.3064 0.0173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612628062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:04 Heat of formation + Delta-G solvation = -76.814568 kcal Electronic energy + Delta-G solvation = -29878.576493 eV Core-core repulsion = 26005.539586 eV Total energy + Delta-G solvation = -3873.036907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66835 -39.96485 -38.61083 -37.40619 -35.87999 -34.01693 -33.27530 -32.34789 -31.63723 -30.87413 -29.11650 -28.12695 -26.92399 -24.86815 -23.89401 -23.41710 -22.70225 -21.24813 -21.12873 -20.10058 -19.20994 -18.59529 -17.76381 -17.45164 -16.98584 -16.57538 -16.02778 -15.57898 -15.50300 -15.36801 -15.33597 -14.89063 -14.74402 -14.43356 -14.26354 -13.95810 -13.83693 -13.79341 -13.22218 -13.21212 -13.07115 -12.99233 -12.91126 -12.68877 -12.62154 -12.57735 -12.52780 -12.13133 -12.04568 -11.98566 -11.85607 -11.59498 -11.53395 -11.43505 -11.37034 -11.00174 -10.78718 -10.58579 -9.93683 -9.31531 -8.71491 -7.85888 -5.34809 1.47611 1.48923 1.58345 1.68174 2.34623 2.51547 3.06944 3.29996 3.41477 3.63577 3.66262 3.74575 3.86401 3.91412 4.06014 4.11061 4.12390 4.22280 4.34680 4.45780 4.47146 4.56918 4.66837 4.72769 4.74089 4.79893 4.82602 4.85653 4.89871 4.95494 5.02328 5.05095 5.07350 5.11160 5.13514 5.13926 5.26811 5.27169 5.30713 5.42728 5.46617 5.53600 5.63365 5.68823 5.71699 6.18460 6.39112 6.95825 7.13135 7.15304 7.78493 7.83766 8.36972 9.20619 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.002817 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.848288 B = 9937.769151 C =10192.803256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 C -0.128 4.128 4 O -0.564 6.564 5 C 0.127 3.873 6 H 0.054 0.946 7 C -0.119 4.119 8 C -0.122 4.122 9 C 0.088 3.912 10 N -0.630 5.630 11 C 0.712 3.288 12 O -0.608 6.608 13 N -0.731 5.731 14 C 0.185 3.815 15 C -0.120 4.120 16 C 0.143 3.857 17 N -0.610 5.610 18 C -0.260 4.260 19 H 0.075 0.925 20 C -0.057 4.057 21 N -0.941 5.941 22 Si 0.973 3.027 23 H -0.285 1.285 24 H -0.297 1.297 25 H -0.264 1.264 26 C 0.184 3.816 27 C -0.127 4.127 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.374 0.626 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.403 0.597 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.009 0.991 46 H 0.069 0.931 47 H 0.249 0.751 48 H 0.059 0.941 49 H -0.014 1.014 50 H 0.057 0.943 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.591 15.199 15.054 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.064 3.936 3 C -0.185 4.185 4 O -0.371 6.371 5 C 0.022 3.978 6 H 0.072 0.928 7 C -0.156 4.156 8 C -0.160 4.160 9 C -0.034 4.034 10 N -0.368 5.368 11 C 0.414 3.586 12 O -0.487 6.487 13 N -0.386 5.386 14 C 0.080 3.920 15 C -0.159 4.159 16 C 0.017 3.983 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.093 0.907 20 C -0.252 4.252 21 N -0.587 5.587 22 Si 0.801 3.199 23 H -0.212 1.212 24 H -0.224 1.224 25 H -0.188 1.188 26 C 0.057 3.943 27 C -0.167 4.167 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.222 0.778 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.239 0.761 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.027 0.973 46 H 0.088 0.912 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.004 0.996 50 H 0.076 0.924 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.480 15.134 14.128 29.122 hybrid contribution 0.839 -1.487 -0.101 1.711 sum -19.640 13.646 14.027 27.726 Atomic orbital electron populations 1.22429 0.93530 1.03195 1.03461 1.21792 0.93784 0.93205 0.84794 1.21689 1.00555 0.93572 1.02724 1.86650 1.77959 1.28703 1.43763 1.22264 0.79178 0.99115 0.97204 0.92815 1.22805 0.98381 1.02690 0.91762 1.22721 0.92470 1.03803 0.97043 1.22522 0.99922 0.97220 0.83741 1.47557 1.05672 1.60939 1.22654 1.15664 0.80933 0.80007 0.81994 1.90874 1.79138 1.44626 1.34072 1.45142 1.04726 1.58185 1.30540 1.20413 0.87792 0.92867 0.90939 1.22116 0.94341 0.98385 1.01066 1.21030 0.97199 0.85225 0.94860 1.44358 1.02295 1.03812 1.82873 1.19613 0.86760 0.96640 1.36032 0.90709 1.25934 1.01417 0.99186 0.98643 1.70206 1.38551 1.08977 1.40961 0.85173 0.79661 0.77990 0.77050 1.21192 1.22416 1.18843 1.20482 0.86590 0.93990 0.93213 1.22296 0.97828 0.96770 0.99837 0.88969 0.92417 0.91931 0.94494 0.93115 0.88356 0.77850 0.88300 0.88181 0.86920 0.91014 0.90815 0.90272 0.76095 0.93258 0.89537 0.90701 0.97251 0.91208 0.94204 0.92265 0.99621 0.92384 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.36 71.98 0.60 -1.66 16 2 C 0.11 2.12 0.86 -10.79 -0.01 2.11 16 3 C -0.13 -2.42 8.42 71.98 0.61 -1.81 16 4 O -0.56 -17.02 10.08 -126.45 -1.27 -18.29 16 5 C 0.13 2.36 2.52 45.34 0.11 2.47 16 6 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 7 C -0.12 -1.05 5.26 31.78 0.17 -0.88 16 8 C -0.12 -1.01 7.07 31.91 0.23 -0.78 16 9 C 0.09 1.21 6.45 86.78 0.56 1.77 16 10 N -0.63 -14.29 2.08 -806.31 -1.67 -15.97 16 11 C 0.71 23.25 7.90 179.05 1.41 24.66 16 12 O -0.61 -25.42 13.41 18.55 0.25 -25.17 16 13 N -0.73 -22.04 5.03 -457.69 -2.30 -24.34 16 14 C 0.19 6.93 2.42 45.02 0.11 7.04 16 15 C -0.12 -3.99 5.55 30.67 0.17 -3.82 16 16 C 0.14 6.04 6.52 86.36 0.56 6.61 16 17 N -0.61 -31.89 3.00 -699.08 -2.10 -33.99 16 18 C -0.26 -14.57 9.60 84.03 0.81 -13.76 16 19 H 0.08 3.97 7.87 -2.91 -0.02 3.95 16 20 C -0.06 -3.28 4.99 84.86 0.42 -2.85 16 21 N -0.94 -58.10 11.01 21.65 0.24 -57.86 16 22 Si 0.97 45.72 29.58 68.60 2.03 47.75 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.18 9.76 5.29 86.36 0.46 10.22 16 27 C -0.13 -5.49 5.65 30.67 0.17 -5.32 16 28 H 0.09 0.73 6.99 -2.39 -0.02 0.72 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.88 7.27 -2.39 -0.02 0.86 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.12 6.36 -2.38 -0.02 1.11 16 34 H 0.37 10.56 8.74 -74.06 -0.65 9.91 16 35 H 0.10 0.57 5.49 -2.39 -0.01 0.55 16 36 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 1.00 7.53 -2.38 -0.02 0.98 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.40 9.40 7.23 -92.70 -0.67 8.73 16 42 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 43 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 47 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 48 H 0.06 3.52 5.96 -2.39 -0.01 3.50 16 49 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 50 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 51 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -77.81 383.59 1.15 -76.66 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.39 Total: 27.21 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 6.38 Total: 24.00 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -5.84 Total: -132.16 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.03 Total: -43.46 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.81 1.15 -76.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612628062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.159 kcal (2) G-P(sol) polarization free energy of solvation -77.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds