Wall clock time and date at job start Fri Apr 10 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.44849 * 2 1 4 4 O 1.42894 * 109.46981 * 60.03644 * 3 2 1 5 5 C 1.53047 * 109.46385 * 240.03370 * 2 1 3 6 6 C 1.53184 * 109.31061 * 301.34648 * 5 2 1 7 7 N 1.46920 * 108.77634 * 305.36319 * 6 5 2 8 8 C 1.34779 * 120.63135 * 233.58485 * 7 6 5 9 9 O 1.21586 * 120.00171 * 174.83285 * 8 7 6 10 10 N 1.34783 * 120.00075 * 354.84228 * 8 7 6 11 11 C 1.46494 * 119.99950 * 185.18619 * 10 8 7 12 12 C 1.53042 * 109.46206 * 275.02202 * 11 10 8 13 13 C 1.53187 * 109.31217 * 178.60354 * 12 11 10 14 14 N 1.46925 * 108.76695 * 54.65641 * 13 12 11 15 15 C 1.36936 * 120.62936 * 126.35649 * 14 13 12 16 16 H 1.08001 * 120.00478 * 329.11184 * 15 14 13 17 17 C 1.38812 * 120.00124 * 149.10397 * 15 14 13 18 18 N 1.31623 * 119.99993 * 349.48496 * 17 15 14 19 19 Si 1.86795 * 120.00401 * 169.48274 * 17 15 14 20 20 H 1.48498 * 109.46891 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47382 * 120.00357 * 19 17 15 22 22 H 1.48503 * 109.47219 * 240.00559 * 19 17 15 23 23 C 1.46926 * 118.74212 * 306.38813 * 14 13 12 24 24 C 1.53040 * 109.45600 * 154.97197 * 11 10 8 25 25 C 1.46923 * 118.73890 * 53.61000 * 7 6 5 26 26 C 1.53042 * 109.46158 * 119.96401 * 2 1 3 27 27 H 1.08996 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47308 * 299.96696 * 1 2 3 29 29 H 1.09013 * 109.46776 * 59.96664 * 1 2 3 30 30 H 1.08998 * 109.46759 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47125 * 300.02991 * 3 2 1 32 32 H 0.96698 * 113.99982 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.49294 * 61.29729 * 5 2 1 34 34 H 1.09002 * 109.49842 * 181.39084 * 5 2 1 35 35 H 1.09003 * 109.58790 * 65.14873 * 6 5 2 36 36 H 1.08997 * 109.58476 * 185.57474 * 6 5 2 37 37 H 0.97004 * 119.99509 * 5.18129 * 10 8 7 38 38 H 1.08998 * 109.46299 * 35.00529 * 11 10 8 39 39 H 1.08998 * 109.49752 * 298.57483 * 12 11 10 40 40 H 1.09005 * 109.49454 * 58.66426 * 12 11 10 41 41 H 1.09005 * 109.59747 * 294.87001 * 13 12 11 42 42 H 1.09003 * 109.70044 * 174.51165 * 13 12 11 43 43 H 0.96994 * 120.00311 * 179.97438 * 18 17 15 44 44 H 1.09009 * 109.57917 * 293.81558 * 23 14 13 45 45 H 1.08997 * 109.70602 * 173.46341 * 23 14 13 46 46 H 1.09007 * 109.49828 * 301.33463 * 24 11 10 47 47 H 1.09001 * 109.50175 * 61.43515 * 24 11 10 48 48 H 1.09012 * 109.58686 * 186.60264 * 25 7 6 49 49 H 1.08996 * 109.70488 * 66.25117 * 25 7 6 50 50 H 1.08998 * 109.49739 * 178.60532 * 26 2 1 51 51 H 1.08996 * 109.49666 * 298.71057 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0394 1.4428 0.0000 4 8 1.5635 2.1159 1.1672 5 6 2.0399 -0.7208 -1.2501 6 6 1.4996 -2.1541 -1.2643 7 7 1.8625 -2.8088 -0.0001 8 6 2.5156 -3.9878 0.0000 9 8 2.8933 -4.4735 1.0487 10 7 2.7502 -4.6283 -1.1625 11 6 3.3577 -5.9613 -1.1547 12 6 4.8809 -5.8271 -1.0900 13 6 5.5110 -7.2227 -1.0468 14 7 5.0221 -7.9979 -2.1951 15 6 5.9009 -8.6000 -3.0555 16 1 6.8697 -8.1578 -3.2350 17 6 5.5467 -9.7790 -3.6969 18 7 4.4624 -10.4282 -3.3291 19 14 6.6086 -10.4442 -5.0822 20 1 7.7619 -9.5349 -5.3021 21 1 7.1054 -11.7959 -4.7198 22 1 5.8025 -10.5301 -6.3264 23 6 3.5723 -8.1142 -2.4033 24 6 2.9638 -6.7085 -2.4309 25 6 1.4995 -2.1541 1.2642 26 6 2.0398 -0.7207 1.2501 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5133 0.8902 29 1 -0.3633 0.5144 -0.8898 30 1 3.1294 1.4431 -0.0005 31 1 1.6754 1.9566 -0.8897 32 1 1.8482 3.0377 1.2331 33 1 1.6958 -0.1934 -2.1398 34 1 3.1296 -0.7428 -1.2383 35 1 0.4147 -2.1347 -1.3674 36 1 1.9383 -2.7017 -2.0984 37 1 2.5166 -4.2066 -2.0043 38 1 3.0047 -6.5162 -0.2854 39 1 5.2369 -5.2940 -1.9716 40 1 5.1596 -5.2743 -0.1928 41 1 5.2278 -7.7232 -0.1208 42 1 6.5965 -7.1375 -1.0988 43 1 4.2146 -11.2518 -3.7775 44 1 3.1310 -8.6875 -1.5879 45 1 3.3761 -8.6160 -3.3508 46 1 1.8778 -6.7833 -2.4882 47 1 3.3381 -6.1671 -3.2997 48 1 1.9381 -2.7018 2.0984 49 1 0.4148 -2.1348 1.3698 50 1 3.1295 -0.7428 1.2383 51 1 1.6957 -0.1935 2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613063240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:07 Heat of formation + Delta-G solvation = -60.898274 kcal Electronic energy + Delta-G solvation = -29093.235598 eV Core-core repulsion = 25220.888873 eV Total energy + Delta-G solvation = -3872.346725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.70941 -39.03970 -37.42189 -36.48223 -34.43707 -33.80535 -32.13408 -31.23003 -30.02217 -29.31039 -27.93471 -27.14598 -25.00309 -23.58618 -23.35035 -22.15624 -21.76641 -20.10164 -19.54839 -18.58403 -17.92211 -17.57384 -16.68085 -16.21926 -15.61386 -15.35832 -15.10868 -14.91172 -14.66236 -14.36624 -14.01642 -13.94299 -13.59021 -13.47668 -13.31050 -12.96367 -12.85890 -12.53338 -12.46634 -12.31479 -12.16201 -11.86120 -11.49581 -11.41117 -11.04407 -10.99778 -10.88888 -10.76838 -10.72671 -10.63735 -10.42330 -10.30234 -10.21894 -9.99829 -9.89795 -9.72940 -9.48471 -8.81088 -8.49708 -8.35700 -6.60634 -5.76732 -3.23821 2.73650 3.37259 3.38171 3.44884 3.47080 3.77423 3.99189 4.33456 4.38221 4.50197 4.60206 4.81791 4.86822 4.97741 5.08230 5.09347 5.21264 5.24361 5.39043 5.43160 5.45069 5.49871 5.53669 5.56655 5.66641 5.67831 5.73630 5.76025 5.86569 5.95331 5.98552 6.13759 6.14979 6.34680 6.40725 6.45028 6.58454 6.66353 6.67497 6.85823 6.96415 7.04640 7.14596 7.22526 7.37901 7.69382 7.80767 8.13780 8.49636 8.80531 9.24433 9.85974 10.44430 11.31685 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.002347 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.168529 B =11927.642353 C =12068.553848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C 0.086 3.914 4 O -0.569 6.569 5 C -0.125 4.125 6 C 0.114 3.886 7 N -0.633 5.633 8 C 0.705 3.295 9 O -0.589 6.589 10 N -0.740 5.740 11 C 0.169 3.831 12 C -0.139 4.139 13 C 0.148 3.852 14 N -0.594 5.594 15 C -0.249 4.249 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.906 5.906 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.175 3.825 24 C -0.146 4.146 25 C 0.128 3.872 26 C -0.119 4.119 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.377 0.623 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.389 0.611 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.253 0.747 44 H 0.020 0.980 45 H 0.094 0.906 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.093 0.907 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.086 24.971 4.068 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 C 0.008 3.992 4 O -0.374 6.374 5 C -0.164 4.164 6 C -0.010 4.010 7 N -0.372 5.372 8 C 0.407 3.593 9 O -0.467 6.467 10 N -0.395 5.395 11 C 0.065 3.935 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.379 4.379 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.551 5.551 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.048 3.952 24 C -0.186 4.186 25 C 0.005 3.995 26 C -0.157 4.157 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.224 0.776 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.225 0.775 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.112 0.888 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.131 23.807 4.881 25.961 hybrid contribution 0.670 0.513 -1.398 1.633 sum -8.461 24.320 3.484 25.985 Atomic orbital electron populations 1.21896 0.93820 1.01984 1.02177 1.20535 0.96627 0.92955 0.95745 1.22211 0.97145 0.92547 0.87259 1.86468 1.77560 1.28889 1.44516 1.21939 1.01479 0.95543 0.97401 1.21570 1.00223 0.92797 0.86386 1.47280 1.61566 1.21498 1.06834 1.15929 0.78467 0.80223 0.84678 1.90902 1.57238 1.67614 1.30938 1.45732 1.66986 1.20228 1.06604 1.20903 0.92815 0.80165 0.99611 1.22378 0.95058 0.99839 1.00630 1.20888 0.96939 0.89475 0.90639 1.44072 1.01745 1.59214 1.26614 1.19236 0.98232 1.02066 1.18353 0.91742 1.25168 0.98094 0.95725 1.00688 1.69973 1.26005 1.17019 1.42087 0.86183 0.79853 0.78671 0.81832 1.20288 1.21661 1.21634 1.20767 0.82903 0.89379 1.02107 1.22561 0.99491 1.00888 0.95698 1.21460 0.99336 0.92318 0.86382 1.21907 1.00919 0.95034 0.97830 0.92133 0.91749 0.92941 0.93731 0.93717 0.77614 0.90578 0.91139 0.91115 0.90287 0.77535 0.90258 0.92634 0.92629 0.96174 0.92668 0.93649 0.96160 0.88790 0.92869 0.92375 0.88859 0.91790 0.91737 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 7.57 37.15 0.28 -0.73 16 2 C -0.06 -0.44 0.60 -154.46 -0.09 -0.53 16 3 C 0.09 0.56 5.91 37.16 0.22 0.77 16 4 O -0.57 -3.88 12.28 -35.23 -0.43 -4.32 16 5 C -0.13 -0.90 4.91 -26.61 -0.13 -1.03 16 6 C 0.11 0.97 5.92 -3.72 -0.02 0.95 16 7 N -0.63 -7.54 2.97 -178.50 -0.53 -8.07 16 8 C 0.71 11.25 8.26 -86.91 -0.72 10.53 16 9 O -0.59 -11.83 15.42 5.29 0.08 -11.75 16 10 N -0.74 -11.11 4.99 -58.64 -0.29 -11.40 16 11 C 0.17 3.07 2.38 -67.89 -0.16 2.91 16 12 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 13 C 0.15 3.27 6.52 -3.71 -0.02 3.24 16 14 N -0.59 -15.05 2.99 -172.32 -0.51 -15.57 16 15 C -0.25 -6.85 9.59 -15.06 -0.14 -7.00 16 16 H 0.06 1.75 7.85 -52.49 -0.41 1.34 16 17 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 18 N -0.91 -26.24 11.01 55.49 0.61 -25.63 16 19 Si 0.90 21.66 29.57 -169.99 -5.03 16.63 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 C 0.17 4.16 5.26 -3.71 -0.02 4.15 16 24 C -0.15 -2.74 5.55 -26.61 -0.15 -2.88 16 25 C 0.13 1.40 5.97 -3.71 -0.02 1.37 16 26 C -0.12 -1.09 4.78 -26.61 -0.13 -1.22 16 27 H 0.06 0.45 4.98 -51.93 -0.26 0.19 16 28 H 0.06 0.51 7.68 -51.93 -0.40 0.12 16 29 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.38 1.02 9.12 45.56 0.42 1.43 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.53 6.69 -51.93 -0.35 0.18 16 36 H 0.08 0.63 5.64 -51.93 -0.29 0.34 16 37 H 0.39 4.77 6.09 -40.82 -0.25 4.52 16 38 H 0.08 1.63 7.66 -51.93 -0.40 1.23 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.09 2.48 6.06 -51.93 -0.31 2.16 16 46 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.09 1.22 7.00 -51.92 -0.36 0.85 16 49 H 0.06 0.62 6.70 -51.93 -0.35 0.27 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.08 0.75 7.64 -51.93 -0.40 0.35 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -33.21 381.44 -9.68 -42.89 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.98 Total: 3.77 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.35 Total: 7.69 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.73 Total: -60.67 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.35 Total: -16.07 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.21 -9.68 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613063240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.006 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds