Wall clock time and date at job start Fri Apr 10 2020 18:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.44849 * 2 1 4 4 O 1.42894 * 109.46981 * 60.03644 * 3 2 1 5 5 C 1.53047 * 109.46385 * 240.03370 * 2 1 3 6 6 C 1.53184 * 109.31061 * 301.34648 * 5 2 1 7 7 N 1.46920 * 108.77634 * 305.36319 * 6 5 2 8 8 C 1.34779 * 120.63135 * 233.58485 * 7 6 5 9 9 O 1.21586 * 120.00171 * 174.83285 * 8 7 6 10 10 N 1.34783 * 120.00075 * 354.84228 * 8 7 6 11 11 C 1.46494 * 119.99950 * 185.18619 * 10 8 7 12 12 C 1.53042 * 109.46206 * 275.02202 * 11 10 8 13 13 C 1.53187 * 109.31217 * 178.60354 * 12 11 10 14 14 N 1.46925 * 108.76695 * 54.65641 * 13 12 11 15 15 C 1.36936 * 120.62936 * 126.35649 * 14 13 12 16 16 H 1.08001 * 120.00478 * 329.11184 * 15 14 13 17 17 C 1.38812 * 120.00124 * 149.10397 * 15 14 13 18 18 N 1.31623 * 119.99993 * 349.48496 * 17 15 14 19 19 Si 1.86795 * 120.00401 * 169.48274 * 17 15 14 20 20 H 1.48498 * 109.46891 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47382 * 120.00357 * 19 17 15 22 22 H 1.48503 * 109.47219 * 240.00559 * 19 17 15 23 23 C 1.46926 * 118.74212 * 306.38813 * 14 13 12 24 24 C 1.53040 * 109.45600 * 154.97197 * 11 10 8 25 25 C 1.46923 * 118.73890 * 53.61000 * 7 6 5 26 26 C 1.53042 * 109.46158 * 119.96401 * 2 1 3 27 27 H 1.08996 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47308 * 299.96696 * 1 2 3 29 29 H 1.09013 * 109.46776 * 59.96664 * 1 2 3 30 30 H 1.08998 * 109.46759 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47125 * 300.02991 * 3 2 1 32 32 H 0.96698 * 113.99982 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.49294 * 61.29729 * 5 2 1 34 34 H 1.09002 * 109.49842 * 181.39084 * 5 2 1 35 35 H 1.09003 * 109.58790 * 65.14873 * 6 5 2 36 36 H 1.08997 * 109.58476 * 185.57474 * 6 5 2 37 37 H 0.97004 * 119.99509 * 5.18129 * 10 8 7 38 38 H 1.08998 * 109.46299 * 35.00529 * 11 10 8 39 39 H 1.08998 * 109.49752 * 298.57483 * 12 11 10 40 40 H 1.09005 * 109.49454 * 58.66426 * 12 11 10 41 41 H 1.09005 * 109.59747 * 294.87001 * 13 12 11 42 42 H 1.09003 * 109.70044 * 174.51165 * 13 12 11 43 43 H 0.96994 * 120.00311 * 179.97438 * 18 17 15 44 44 H 1.09009 * 109.57917 * 293.81558 * 23 14 13 45 45 H 1.08997 * 109.70602 * 173.46341 * 23 14 13 46 46 H 1.09007 * 109.49828 * 301.33463 * 24 11 10 47 47 H 1.09001 * 109.50175 * 61.43515 * 24 11 10 48 48 H 1.09012 * 109.58686 * 186.60264 * 25 7 6 49 49 H 1.08996 * 109.70488 * 66.25117 * 25 7 6 50 50 H 1.08998 * 109.49739 * 178.60532 * 26 2 1 51 51 H 1.08996 * 109.49666 * 298.71057 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0394 1.4428 0.0000 4 8 1.5635 2.1159 1.1672 5 6 2.0399 -0.7208 -1.2501 6 6 1.4996 -2.1541 -1.2643 7 7 1.8625 -2.8088 -0.0001 8 6 2.5156 -3.9878 0.0000 9 8 2.8933 -4.4735 1.0487 10 7 2.7502 -4.6283 -1.1625 11 6 3.3577 -5.9613 -1.1547 12 6 4.8809 -5.8271 -1.0900 13 6 5.5110 -7.2227 -1.0468 14 7 5.0221 -7.9979 -2.1951 15 6 5.9009 -8.6000 -3.0555 16 1 6.8697 -8.1578 -3.2350 17 6 5.5467 -9.7790 -3.6969 18 7 4.4624 -10.4282 -3.3291 19 14 6.6086 -10.4442 -5.0822 20 1 7.7619 -9.5349 -5.3021 21 1 7.1054 -11.7959 -4.7198 22 1 5.8025 -10.5301 -6.3264 23 6 3.5723 -8.1142 -2.4033 24 6 2.9638 -6.7085 -2.4309 25 6 1.4995 -2.1541 1.2642 26 6 2.0398 -0.7207 1.2501 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5133 0.8902 29 1 -0.3633 0.5144 -0.8898 30 1 3.1294 1.4431 -0.0005 31 1 1.6754 1.9566 -0.8897 32 1 1.8482 3.0377 1.2331 33 1 1.6958 -0.1934 -2.1398 34 1 3.1296 -0.7428 -1.2383 35 1 0.4147 -2.1347 -1.3674 36 1 1.9383 -2.7017 -2.0984 37 1 2.5166 -4.2066 -2.0043 38 1 3.0047 -6.5162 -0.2854 39 1 5.2369 -5.2940 -1.9716 40 1 5.1596 -5.2743 -0.1928 41 1 5.2278 -7.7232 -0.1208 42 1 6.5965 -7.1375 -1.0988 43 1 4.2146 -11.2518 -3.7775 44 1 3.1310 -8.6875 -1.5879 45 1 3.3761 -8.6160 -3.3508 46 1 1.8778 -6.7833 -2.4882 47 1 3.3381 -6.1671 -3.2997 48 1 1.9381 -2.7018 2.0984 49 1 0.4148 -2.1348 1.3698 50 1 3.1295 -0.7428 1.2383 51 1 1.6957 -0.1935 2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613063240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:06 Heat of formation + Delta-G solvation = -84.154345 kcal Electronic energy + Delta-G solvation = -29094.244057 eV Core-core repulsion = 25220.888873 eV Total energy + Delta-G solvation = -3873.355184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72281 -40.05784 -38.90851 -37.22669 -36.04257 -34.76906 -33.78652 -32.24026 -31.65762 -30.98320 -28.74150 -27.74441 -26.82166 -24.53363 -24.24097 -23.84375 -23.28535 -21.23367 -21.08722 -19.76520 -18.83667 -18.48952 -18.11254 -17.44380 -16.86223 -16.51806 -16.16852 -15.85289 -15.66371 -15.54891 -15.33236 -15.32024 -14.89302 -14.77076 -14.68221 -14.28036 -14.02775 -13.90238 -13.39733 -13.34559 -13.17802 -12.93851 -12.82352 -12.64565 -12.55984 -12.46947 -12.21645 -12.12807 -11.98355 -11.87277 -11.64380 -11.57352 -11.50464 -11.37540 -11.30070 -11.06696 -10.77758 -10.57226 -10.12140 -9.43467 -8.65724 -7.86292 -5.37433 1.48076 1.49559 1.60420 1.63420 2.14533 2.51723 2.93091 3.30781 3.32089 3.66972 3.72144 3.74966 3.89960 4.01574 4.07841 4.17795 4.22899 4.28461 4.34431 4.45573 4.47477 4.55860 4.61849 4.65633 4.71146 4.73229 4.81865 4.85081 4.87133 4.90492 4.99089 5.00999 5.07870 5.08245 5.16673 5.17662 5.20791 5.29070 5.31936 5.48662 5.54689 5.59423 5.63862 5.65082 5.73748 5.97775 6.41972 6.96294 7.00362 7.16134 7.58769 7.83739 8.38125 9.20391 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.002347 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.168529 B =11927.642353 C =12068.553848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C 0.088 3.912 4 O -0.588 6.588 5 C -0.120 4.120 6 C 0.106 3.894 7 N -0.625 5.625 8 C 0.700 3.300 9 O -0.637 6.637 10 N -0.727 5.727 11 C 0.182 3.818 12 C -0.122 4.122 13 C 0.146 3.854 14 N -0.609 5.609 15 C -0.261 4.261 16 H 0.067 0.933 17 C -0.050 4.050 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.294 1.294 22 H -0.287 1.287 23 C 0.179 3.821 24 C -0.127 4.127 25 C 0.127 3.873 26 C -0.110 4.110 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.394 0.606 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.406 0.594 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.005 0.995 42 H 0.057 0.943 43 H 0.251 0.749 44 H -0.007 1.007 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.049 0.951 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 27.612 2.254 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 C 0.010 3.990 4 O -0.395 6.395 5 C -0.158 4.158 6 C -0.016 4.016 7 N -0.362 5.362 8 C 0.402 3.598 9 O -0.519 6.519 10 N -0.384 5.384 11 C 0.076 3.924 12 C -0.163 4.163 13 C 0.019 3.981 14 N -0.333 5.333 15 C -0.392 4.392 16 H 0.084 0.916 17 C -0.245 4.245 18 N -0.583 5.583 19 Si 0.800 3.200 20 H -0.191 1.191 21 H -0.221 1.221 22 H -0.213 1.213 23 C 0.053 3.947 24 C -0.167 4.167 25 C 0.004 3.996 26 C -0.148 4.148 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.244 0.756 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.245 0.755 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.011 0.989 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.068 0.932 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.714 26.540 3.045 28.425 hybrid contribution 0.823 -0.260 -0.736 1.134 sum -8.891 26.280 2.310 27.839 Atomic orbital electron populations 1.21839 0.93283 1.01804 1.02414 1.20554 0.96964 0.93627 0.94753 1.22187 0.97094 0.91887 0.87843 1.86423 1.77856 1.30438 1.44832 1.21915 1.00919 0.94646 0.98300 1.21898 1.01574 0.93457 0.84666 1.47319 1.60084 1.20184 1.08618 1.16095 0.78603 0.81145 0.83962 1.90875 1.59222 1.69155 1.32607 1.45321 1.66695 1.18992 1.07374 1.20490 0.92224 0.81498 0.98171 1.22165 0.95550 0.97598 1.00945 1.20957 0.97344 0.90702 0.89065 1.44320 1.02167 1.59537 1.27288 1.19548 0.98665 1.02325 1.18623 0.91569 1.25942 0.99423 0.96066 1.03114 1.70143 1.27593 1.17304 1.43297 0.85133 0.78468 0.77632 0.78749 1.19062 1.22102 1.21335 1.20582 0.82582 0.92005 0.99508 1.22267 1.00518 0.97589 0.96281 1.21518 1.00045 0.92834 0.85185 1.21802 0.99857 0.93973 0.99166 0.92457 0.92743 0.91498 0.93830 0.91958 0.75642 0.87806 0.92003 0.89259 0.89386 0.75477 0.92957 0.91650 0.92695 0.97655 0.92444 0.93987 0.98911 0.91440 0.90553 0.91102 0.91661 0.90271 0.93234 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.57 71.98 0.54 -1.02 16 2 C -0.06 -0.73 0.60 -52.15 -0.03 -0.76 16 3 C 0.09 0.89 5.91 71.98 0.43 1.32 16 4 O -0.59 -6.78 12.28 -148.98 -1.83 -8.61 16 5 C -0.12 -1.32 4.91 30.67 0.15 -1.16 16 6 C 0.11 1.47 5.92 86.36 0.51 1.98 16 7 N -0.62 -14.02 2.97 -836.92 -2.49 -16.50 16 8 C 0.70 21.87 8.26 179.05 1.48 23.34 16 9 O -0.64 -26.10 15.42 -3.99 -0.06 -26.16 16 10 N -0.73 -20.63 4.99 -457.68 -2.28 -22.92 16 11 C 0.18 6.49 2.38 45.02 0.11 6.60 16 12 C -0.12 -4.61 5.65 30.67 0.17 -4.44 16 13 C 0.15 6.54 6.52 86.36 0.56 7.10 16 14 N -0.61 -31.32 2.99 -699.09 -2.09 -33.41 16 15 C -0.26 -14.46 9.59 84.03 0.81 -13.66 16 16 H 0.07 3.57 7.85 -2.91 -0.02 3.55 16 17 C -0.05 -2.81 5.06 84.86 0.43 -2.38 16 18 N -0.94 -55.42 11.01 21.65 0.24 -55.18 16 19 Si 0.97 44.65 29.57 68.60 2.03 46.68 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 C 0.18 8.71 5.26 86.36 0.45 9.16 16 24 C -0.13 -4.60 5.55 30.67 0.17 -4.43 16 25 C 0.13 2.70 5.97 86.36 0.52 3.22 16 26 C -0.11 -1.91 4.78 30.67 0.15 -1.76 16 27 H 0.06 0.69 4.98 -2.39 -0.01 0.67 16 28 H 0.05 0.75 7.68 -2.39 -0.02 0.73 16 29 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.39 1.29 9.12 -74.06 -0.68 0.62 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 0.99 6.69 -2.39 -0.02 0.97 16 36 H 0.09 1.08 5.64 -2.39 -0.01 1.06 16 37 H 0.41 8.75 6.09 -92.71 -0.56 8.19 16 38 H 0.05 2.19 7.66 -2.39 -0.02 2.17 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.05 2.09 8.08 -2.38 -0.02 2.07 16 41 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 42 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 43 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 44 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 45 H 0.07 3.64 6.06 -2.39 -0.01 3.62 16 46 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 47 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.06 1.77 7.00 -2.38 -0.02 1.75 16 49 H 0.08 1.45 6.70 -2.39 -0.02 1.43 16 50 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.08 1.43 7.64 -2.39 -0.02 1.41 16 Total: -1.00 -73.61 381.44 -0.35 -73.96 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.31 Total: 19.02 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 6.44 Total: 23.12 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -6.62 Total: -128.01 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.89 Total: -34.77 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -73.61 -0.35 -73.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613063240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.193 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds