Wall clock time and date at job start Fri Apr 10 2020 18:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48503 * 109.46989 * 270.00405 * 3 2 1 5 5 H 1.48498 * 109.46996 * 150.00550 * 3 2 1 6 6 H 1.48505 * 109.46872 * 30.00594 * 3 2 1 7 7 C 1.38814 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99955 * 155.02235 * 7 2 1 9 9 N 1.36943 * 119.99781 * 335.01602 * 7 2 1 10 10 C 1.46923 * 120.62934 * 332.23380 * 9 7 2 11 11 C 1.52766 * 109.00475 * 233.58213 * 10 9 7 12 12 C 1.53044 * 109.38221 * 305.58930 * 11 10 9 13 13 N 1.46500 * 109.45722 * 181.26415 * 12 11 10 14 14 C 1.34773 * 120.00183 * 84.93227 * 13 12 11 15 15 O 1.21585 * 119.99928 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00066 * 179.97438 * 14 13 12 17 17 C 1.46489 * 120.00098 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.01920 * 325.70132 * 17 16 14 19 19 C 1.53880 * 110.03457 * 87.09663 * 17 16 14 20 20 C 1.54374 * 106.54891 * 119.26538 * 19 17 16 21 21 C 1.54885 * 104.21463 * 336.43152 * 20 19 17 22 22 C 1.54273 * 110.03422 * 204.31115 * 17 16 14 23 23 H 1.08993 * 110.48878 * 145.65120 * 22 17 16 24 24 C 1.53001 * 110.48162 * 23.00412 * 22 17 16 25 25 C 1.53001 * 109.46779 * 175.00160 * 24 22 17 26 26 O 1.42903 * 109.47054 * 180.02562 * 25 24 22 27 27 C 1.53034 * 109.53872 * 61.23770 * 12 11 10 28 28 C 1.46924 * 120.62872 * 152.50809 * 9 7 2 29 29 H 0.96999 * 119.99903 * 174.25488 * 1 2 3 30 30 H 1.08998 * 109.58814 * 353.41114 * 10 9 7 31 31 H 1.09000 * 109.58730 * 113.84364 * 10 9 7 32 32 H 1.08996 * 109.56299 * 185.55537 * 11 10 9 33 33 H 1.09004 * 109.38903 * 65.51511 * 11 10 9 34 34 H 1.09007 * 109.45792 * 301.21610 * 12 11 10 35 35 H 0.97000 * 119.99180 * 264.92466 * 13 12 11 36 36 H 0.97010 * 119.99518 * 0.02562 * 16 14 13 37 37 H 1.09000 * 110.02871 * 238.57054 * 19 17 16 38 38 H 1.09003 * 110.02595 * 359.97438 * 19 17 16 39 39 H 1.08994 * 110.49277 * 217.73456 * 20 19 17 40 40 H 1.09007 * 110.57087 * 95.16149 * 20 19 17 41 41 H 1.09000 * 110.75751 * 279.60565 * 21 20 19 42 42 H 1.09001 * 110.75699 * 156.24082 * 21 20 19 43 43 H 1.09001 * 109.47597 * 294.99652 * 24 22 17 44 44 H 1.08997 * 109.47365 * 55.00771 * 24 22 17 45 45 H 1.09000 * 109.47147 * 300.00202 * 25 24 22 46 46 H 1.09004 * 109.47247 * 59.99842 * 25 24 22 47 47 H 0.96702 * 113.99590 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.50004 * 178.68195 * 27 12 11 49 49 H 1.09007 * 109.52329 * 58.60566 * 27 12 11 50 50 H 1.09002 * 109.58742 * 246.15937 * 28 9 7 51 51 H 1.09001 * 109.58557 * 6.58531 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 3.5479 1.4401 0.6999 6 1 1.4478 2.6526 0.7002 7 6 2.0103 -1.2022 -0.0005 8 1 3.0145 -1.2457 -0.3955 9 7 1.4217 -2.3328 0.4999 10 6 0.3919 -2.2413 1.5438 11 6 0.7939 -3.1313 2.7186 12 6 1.0530 -4.5526 2.2136 13 7 1.4093 -5.4145 3.3433 14 6 0.4411 -5.9908 4.0829 15 8 -0.7280 -5.7950 3.8127 16 7 0.7690 -6.7842 5.1219 17 6 -0.2833 -7.4102 5.9261 18 1 -1.1441 -6.7453 5.9970 19 6 -0.7025 -8.7497 5.2952 20 6 -0.4062 -9.8420 6.3451 21 6 0.6887 -9.2175 7.2451 22 6 0.2515 -7.7344 7.3364 23 1 -0.5361 -7.6140 8.0801 24 6 1.4486 -6.8429 7.6730 25 6 1.8817 -7.0952 9.1185 26 8 2.9994 -6.2621 9.4332 27 6 2.2022 -4.5352 1.2031 28 6 1.8122 -3.6608 0.0073 29 1 -0.4850 -0.8358 -0.0841 30 1 0.3055 -1.2088 1.8823 31 1 -0.5646 -2.5783 1.1442 32 1 -0.0091 -3.1478 3.4554 33 1 1.7007 -2.7373 3.1774 34 1 0.1530 -4.9371 1.7335 35 1 2.3421 -5.5704 3.5589 36 1 1.7019 -6.9401 5.3377 37 1 -1.7669 -8.7350 5.0607 38 1 -0.1232 -8.9336 4.3904 39 1 -0.0335 -10.7449 5.8616 40 1 -1.2994 -10.0640 6.9293 41 1 1.6691 -9.3030 6.7765 42 1 0.6891 -9.6815 8.2314 43 1 2.2746 -7.0745 7.0005 44 1 1.1668 -5.7965 7.5555 45 1 1.0557 -6.8636 9.7910 46 1 2.1635 -8.1416 9.2361 47 1 3.3282 -6.3697 10.3362 48 1 2.4017 -5.5508 0.8614 49 1 3.0963 -4.1280 1.6753 50 1 0.9739 -4.1159 -0.5203 51 1 2.6626 -3.5646 -0.6678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614712172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:17 Heat of formation + Delta-G solvation = -77.560076 kcal Electronic energy + Delta-G solvation = -28699.068672 eV Core-core repulsion = 24825.999437 eV Total energy + Delta-G solvation = -3873.069235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44707 -38.91993 -37.48535 -36.97509 -34.48279 -33.60139 -32.48088 -32.03051 -30.16939 -29.29324 -27.71351 -27.13081 -24.70832 -23.02151 -22.44919 -22.07570 -20.86427 -20.78035 -19.69958 -19.37427 -18.29753 -17.73460 -17.31128 -16.26090 -15.87215 -15.58366 -15.17458 -15.08227 -14.50641 -14.37357 -14.15661 -13.94819 -13.72383 -13.60104 -13.47683 -13.24865 -12.86851 -12.55779 -12.34906 -12.00714 -11.97128 -11.62321 -11.44165 -11.27142 -11.21999 -11.12042 -10.95473 -10.86522 -10.72110 -10.59356 -10.38318 -10.31860 -10.16588 -9.99492 -9.96423 -9.85699 -9.26253 -9.11397 -8.55995 -8.31275 -6.84757 -6.02646 -3.18201 2.82284 3.40453 3.52521 3.57233 3.71850 3.72365 4.13630 4.25745 4.35327 4.54507 4.63374 4.70992 4.81793 4.99594 5.06478 5.11474 5.21113 5.23589 5.26543 5.30521 5.34274 5.39661 5.48573 5.48957 5.58279 5.61444 5.71900 5.80126 5.81133 5.91006 5.93520 6.01340 6.06036 6.18632 6.31994 6.36868 6.51150 6.56280 6.60548 6.70086 6.82884 6.90633 7.08991 7.16630 7.22998 7.28510 8.04366 8.17971 8.62423 8.80680 9.16451 9.89467 10.34160 11.26475 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.002557 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.892220 B =10947.473878 C =11818.384545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.025 4.025 3 Si 1.066 2.934 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.351 4.351 8 H 0.056 0.944 9 N -0.600 5.600 10 C 0.154 3.846 11 C -0.141 4.141 12 C 0.170 3.830 13 N -0.740 5.740 14 C 0.701 3.299 15 O -0.590 6.590 16 N -0.745 5.745 17 C 0.167 3.833 18 H 0.091 0.909 19 C -0.135 4.135 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.097 4.097 23 H 0.089 0.911 24 C -0.111 4.111 25 C 0.076 3.924 26 O -0.575 6.575 27 C -0.139 4.139 28 C 0.151 3.849 29 H 0.270 0.730 30 H 0.081 0.919 31 H 0.018 0.982 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.390 0.610 36 H 0.393 0.607 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.046 0.954 47 H 0.379 0.621 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.018 0.982 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 -21.104 18.684 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.227 4.227 3 Si 0.896 3.104 4 H -0.222 1.222 5 H -0.219 1.219 6 H -0.212 1.212 7 C -0.480 4.480 8 H 0.073 0.927 9 N -0.324 5.324 10 C 0.027 3.973 11 C -0.182 4.182 12 C 0.066 3.934 13 N -0.394 5.394 14 C 0.401 3.599 15 O -0.467 6.467 16 N -0.402 5.402 17 C 0.061 3.939 18 H 0.109 0.891 19 C -0.174 4.174 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.116 4.116 23 H 0.107 0.893 24 C -0.149 4.149 25 C -0.002 4.002 26 O -0.380 6.380 27 C -0.179 4.179 28 C 0.024 3.976 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.223 0.777 36 H 0.228 0.772 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.226 0.774 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.036 0.964 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.521 -19.033 17.834 26.205 hybrid contribution 1.169 -2.117 0.723 2.524 sum 3.690 -21.150 18.557 28.378 Atomic orbital electron populations 1.70742 1.06626 1.30471 1.47725 1.25849 0.96534 1.01467 0.98832 0.83538 0.74658 0.75903 0.76341 1.22189 1.21942 1.21187 1.19961 0.97469 0.88449 1.42085 0.92653 1.44159 1.46096 1.01212 1.40901 1.20838 0.90443 0.99004 0.87009 1.22379 1.00999 0.94952 0.99860 1.20839 0.98343 0.89575 0.84623 1.45485 1.07935 1.52281 1.33676 1.16029 0.85477 0.78600 0.79754 1.90921 1.17299 1.66763 1.71744 1.45384 1.09589 1.52599 1.32645 1.21345 0.90482 0.93918 0.88181 0.89088 1.22648 1.02115 0.93936 0.98721 1.22371 0.98639 0.98034 0.97147 1.22639 0.98971 0.94452 0.99842 1.22247 0.97698 0.95059 0.96633 0.89258 1.21479 0.97367 1.01040 0.95011 1.22215 0.88150 0.93266 0.96556 1.86506 1.49751 1.65981 1.35776 1.22331 0.97754 0.99710 0.98064 1.20824 0.97770 0.86349 0.92637 0.91883 0.90098 0.96357 0.92595 0.92489 0.90157 0.77738 0.77158 0.91070 0.91149 0.91618 0.91483 0.91262 0.91401 0.91231 0.90560 0.93710 0.93616 0.77424 0.92582 0.91828 0.96364 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.03 12.41 55.49 0.69 -27.34 16 2 C -0.02 -0.71 4.68 -17.43 -0.08 -0.79 16 3 Si 1.07 25.63 29.99 -169.99 -5.10 20.53 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.35 -9.90 9.49 -15.06 -0.14 -10.04 16 8 H 0.06 1.56 7.94 -52.49 -0.42 1.14 16 9 N -0.60 -15.29 2.86 -172.58 -0.49 -15.78 16 10 C 0.15 3.77 4.66 -3.93 -0.02 3.76 16 11 C -0.14 -2.91 5.64 -26.83 -0.15 -3.06 16 12 C 0.17 3.05 2.42 -67.89 -0.16 2.89 16 13 N -0.74 -10.78 5.08 -58.63 -0.30 -11.07 16 14 C 0.70 10.77 8.52 -86.92 -0.74 10.03 16 15 O -0.59 -11.67 15.67 5.29 0.08 -11.58 16 16 N -0.74 -8.14 4.36 -57.58 -0.25 -8.39 16 17 C 0.17 1.64 3.10 -66.81 -0.21 1.43 16 18 H 0.09 1.11 7.59 -51.93 -0.39 0.71 16 19 C -0.14 -1.24 6.60 -25.55 -0.17 -1.41 16 20 C -0.12 -0.81 6.83 -25.02 -0.17 -0.98 16 21 C -0.12 -0.70 5.67 -24.74 -0.14 -0.84 16 22 C -0.10 -0.67 2.81 -88.96 -0.25 -0.92 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.11 -0.85 4.11 -26.73 -0.11 -0.96 16 25 C 0.08 0.50 6.93 37.16 0.26 0.75 16 26 O -0.57 -4.65 13.66 -35.23 -0.48 -5.13 16 27 C -0.14 -2.38 5.55 -26.62 -0.15 -2.52 16 28 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 29 H 0.27 8.37 6.71 -40.82 -0.27 8.10 16 30 H 0.08 2.22 6.30 -51.93 -0.33 1.89 16 31 H 0.02 0.47 7.87 -51.93 -0.41 0.06 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 35 H 0.39 4.54 8.62 -40.82 -0.35 4.19 16 36 H 0.39 3.41 6.54 -40.82 -0.27 3.14 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.41 7.97 -51.93 -0.41 -0.01 16 42 H 0.07 0.31 8.06 -51.93 -0.42 -0.10 16 43 H 0.07 0.52 6.40 -51.93 -0.33 0.19 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.05 0.24 7.56 -51.93 -0.39 -0.16 16 47 H 0.38 1.33 9.12 45.56 0.42 1.75 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 50 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -34.90 392.54 -10.44 -45.34 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.24 Total: 7.01 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.26 Total: 0.51 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.35 Total: -62.58 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.40 Total: -16.72 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.10 Total: 20.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.90 -10.44 -45.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614712172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.221 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds