Wall clock time and date at job start Fri Apr 10 2020 18:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48503 * 109.46989 * 270.00405 * 3 2 1 5 5 H 1.48498 * 109.46996 * 150.00550 * 3 2 1 6 6 H 1.48505 * 109.46872 * 30.00594 * 3 2 1 7 7 C 1.38814 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99955 * 155.02235 * 7 2 1 9 9 N 1.36943 * 119.99781 * 335.01602 * 7 2 1 10 10 C 1.46923 * 120.62934 * 332.23380 * 9 7 2 11 11 C 1.52766 * 109.00475 * 233.58213 * 10 9 7 12 12 C 1.53044 * 109.38221 * 305.58930 * 11 10 9 13 13 N 1.46500 * 109.45722 * 181.26415 * 12 11 10 14 14 C 1.34773 * 120.00183 * 84.93227 * 13 12 11 15 15 O 1.21585 * 119.99928 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00066 * 179.97438 * 14 13 12 17 17 C 1.46489 * 120.00098 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.01920 * 325.70132 * 17 16 14 19 19 C 1.53880 * 110.03457 * 87.09663 * 17 16 14 20 20 C 1.54374 * 106.54891 * 119.26538 * 19 17 16 21 21 C 1.54885 * 104.21463 * 336.43152 * 20 19 17 22 22 C 1.54273 * 110.03422 * 204.31115 * 17 16 14 23 23 H 1.08993 * 110.48878 * 145.65120 * 22 17 16 24 24 C 1.53001 * 110.48162 * 23.00412 * 22 17 16 25 25 C 1.53001 * 109.46779 * 175.00160 * 24 22 17 26 26 O 1.42903 * 109.47054 * 180.02562 * 25 24 22 27 27 C 1.53034 * 109.53872 * 61.23770 * 12 11 10 28 28 C 1.46924 * 120.62872 * 152.50809 * 9 7 2 29 29 H 0.96999 * 119.99903 * 174.25488 * 1 2 3 30 30 H 1.08998 * 109.58814 * 353.41114 * 10 9 7 31 31 H 1.09000 * 109.58730 * 113.84364 * 10 9 7 32 32 H 1.08996 * 109.56299 * 185.55537 * 11 10 9 33 33 H 1.09004 * 109.38903 * 65.51511 * 11 10 9 34 34 H 1.09007 * 109.45792 * 301.21610 * 12 11 10 35 35 H 0.97000 * 119.99180 * 264.92466 * 13 12 11 36 36 H 0.97010 * 119.99518 * 0.02562 * 16 14 13 37 37 H 1.09000 * 110.02871 * 238.57054 * 19 17 16 38 38 H 1.09003 * 110.02595 * 359.97438 * 19 17 16 39 39 H 1.08994 * 110.49277 * 217.73456 * 20 19 17 40 40 H 1.09007 * 110.57087 * 95.16149 * 20 19 17 41 41 H 1.09000 * 110.75751 * 279.60565 * 21 20 19 42 42 H 1.09001 * 110.75699 * 156.24082 * 21 20 19 43 43 H 1.09001 * 109.47597 * 294.99652 * 24 22 17 44 44 H 1.08997 * 109.47365 * 55.00771 * 24 22 17 45 45 H 1.09000 * 109.47147 * 300.00202 * 25 24 22 46 46 H 1.09004 * 109.47247 * 59.99842 * 25 24 22 47 47 H 0.96702 * 113.99590 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.50004 * 178.68195 * 27 12 11 49 49 H 1.09007 * 109.52329 * 58.60566 * 27 12 11 50 50 H 1.09002 * 109.58742 * 246.15937 * 28 9 7 51 51 H 1.09001 * 109.58557 * 6.58531 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 3.5479 1.4401 0.6999 6 1 1.4478 2.6526 0.7002 7 6 2.0103 -1.2022 -0.0005 8 1 3.0145 -1.2457 -0.3955 9 7 1.4217 -2.3328 0.4999 10 6 0.3919 -2.2413 1.5438 11 6 0.7939 -3.1313 2.7186 12 6 1.0530 -4.5526 2.2136 13 7 1.4093 -5.4145 3.3433 14 6 0.4411 -5.9908 4.0829 15 8 -0.7280 -5.7950 3.8127 16 7 0.7690 -6.7842 5.1219 17 6 -0.2833 -7.4102 5.9261 18 1 -1.1441 -6.7453 5.9970 19 6 -0.7025 -8.7497 5.2952 20 6 -0.4062 -9.8420 6.3451 21 6 0.6887 -9.2175 7.2451 22 6 0.2515 -7.7344 7.3364 23 1 -0.5361 -7.6140 8.0801 24 6 1.4486 -6.8429 7.6730 25 6 1.8817 -7.0952 9.1185 26 8 2.9994 -6.2621 9.4332 27 6 2.2022 -4.5352 1.2031 28 6 1.8122 -3.6608 0.0073 29 1 -0.4850 -0.8358 -0.0841 30 1 0.3055 -1.2088 1.8823 31 1 -0.5646 -2.5783 1.1442 32 1 -0.0091 -3.1478 3.4554 33 1 1.7007 -2.7373 3.1774 34 1 0.1530 -4.9371 1.7335 35 1 2.3421 -5.5704 3.5589 36 1 1.7019 -6.9401 5.3377 37 1 -1.7669 -8.7350 5.0607 38 1 -0.1232 -8.9336 4.3904 39 1 -0.0335 -10.7449 5.8616 40 1 -1.2994 -10.0640 6.9293 41 1 1.6691 -9.3030 6.7765 42 1 0.6891 -9.6815 8.2314 43 1 2.2746 -7.0745 7.0005 44 1 1.1668 -5.7965 7.5555 45 1 1.0557 -6.8636 9.7910 46 1 2.1635 -8.1416 9.2361 47 1 3.3282 -6.3697 10.3362 48 1 2.4017 -5.5508 0.8614 49 1 3.0963 -4.1280 1.6753 50 1 0.9739 -4.1159 -0.5203 51 1 2.6626 -3.5646 -0.6678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614712172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:16 Heat of formation + Delta-G solvation = -103.369708 kcal Electronic energy + Delta-G solvation = -28700.187862 eV Core-core repulsion = 24825.999437 eV Total energy + Delta-G solvation = -3874.188424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53001 -40.00414 -38.95267 -37.60308 -36.16667 -34.72283 -33.74213 -33.08706 -31.92841 -31.01457 -28.56403 -27.76273 -26.62708 -24.15021 -23.79318 -23.57367 -22.10896 -21.43369 -21.16309 -20.37941 -19.68959 -19.22028 -18.29923 -17.37446 -16.71039 -16.42563 -16.28643 -16.11663 -15.92446 -15.86246 -15.40665 -15.27809 -15.23248 -15.01919 -14.57585 -14.51280 -14.18711 -14.01536 -13.50592 -13.23236 -12.99128 -12.76080 -12.61929 -12.59286 -12.45047 -12.09992 -11.99731 -11.95518 -11.85857 -11.80663 -11.73855 -11.65524 -11.51103 -11.48128 -11.37597 -11.19382 -10.80393 -10.49082 -10.31459 -9.77496 -8.97301 -8.26893 -5.41209 1.58202 1.66045 1.69201 1.84149 2.15545 2.65912 3.16404 3.21213 3.31013 3.52645 3.53745 3.66133 3.77303 3.95928 4.02215 4.15437 4.22612 4.28047 4.30869 4.45250 4.45648 4.49555 4.55223 4.60670 4.61421 4.64667 4.73160 4.76648 4.78897 4.89275 4.93767 4.97179 4.99891 5.06748 5.13708 5.14404 5.16945 5.21105 5.24873 5.31429 5.39713 5.47930 5.53763 5.64542 5.83842 6.01588 6.36835 6.92946 7.03149 7.10696 7.60698 7.75904 8.21355 8.99234 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.002557 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.892220 B =10947.473878 C =11818.384545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.080 4.080 3 Si 1.118 2.882 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.293 1.293 7 C -0.354 4.354 8 H 0.058 0.942 9 N -0.617 5.617 10 C 0.163 3.837 11 C -0.126 4.126 12 C 0.183 3.817 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.637 6.637 16 N -0.724 5.724 17 C 0.159 3.841 18 H 0.061 0.939 19 C -0.135 4.135 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.085 4.085 23 H 0.099 0.901 24 C -0.110 4.110 25 C 0.076 3.924 26 O -0.601 6.601 27 C -0.120 4.120 28 C 0.144 3.856 29 H 0.252 0.748 30 H 0.045 0.955 31 H -0.004 1.004 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.408 0.592 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.397 0.603 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.013 0.987 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -23.303 20.474 31.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.276 4.276 3 Si 0.942 3.058 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.219 1.219 7 C -0.484 4.484 8 H 0.076 0.924 9 N -0.341 5.341 10 C 0.037 3.963 11 C -0.166 4.166 12 C 0.077 3.923 13 N -0.382 5.382 14 C 0.398 3.602 15 O -0.519 6.519 16 N -0.381 5.381 17 C 0.054 3.946 18 H 0.079 0.921 19 C -0.174 4.174 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.104 4.104 23 H 0.118 0.882 24 C -0.148 4.148 25 C -0.002 4.002 26 O -0.410 6.410 27 C -0.160 4.160 28 C 0.018 3.982 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.014 0.986 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.245 0.755 36 H 0.246 0.754 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.247 0.753 48 H 0.111 0.889 49 H 0.092 0.908 50 H 0.031 0.969 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.177 -21.310 19.673 29.461 hybrid contribution 0.329 -1.494 0.165 1.538 sum 5.505 -22.803 19.838 30.722 Atomic orbital electron populations 1.70874 1.07783 1.29374 1.50713 1.27294 0.96547 1.05134 0.98640 0.82847 0.74065 0.71854 0.77047 1.20763 1.19787 1.21897 1.20272 0.97504 0.89525 1.41077 0.92387 1.44389 1.46007 1.02371 1.41374 1.20581 0.89744 0.97733 0.88266 1.22156 1.00575 0.96137 0.97768 1.20441 0.98067 0.88108 0.85655 1.45087 1.08893 1.51484 1.32723 1.16220 0.84730 0.78894 0.80384 1.90899 1.19428 1.68434 1.73126 1.45220 1.10785 1.51088 1.31035 1.21498 0.89521 0.93532 0.90049 0.92053 1.22599 1.01001 0.94583 0.99172 1.22346 0.99493 0.97199 0.96459 1.22628 0.98663 0.92909 1.00869 1.22176 0.97731 0.96048 0.94482 0.88234 1.21446 0.97513 0.99481 0.96388 1.22250 0.88159 0.94194 0.95547 1.86448 1.50286 1.66670 1.37576 1.22118 0.97155 1.00809 0.95882 1.21031 0.97701 0.84922 0.94552 0.93782 0.93614 0.98617 0.93513 0.92093 0.92534 0.75458 0.75398 0.92463 0.92427 0.90759 0.90538 0.90821 0.89150 0.91047 0.93241 0.92967 0.91479 0.75327 0.88903 0.90814 0.96867 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.01 12.41 21.65 0.27 -59.74 16 2 C -0.08 -4.70 4.68 84.86 0.40 -4.30 16 3 Si 1.12 51.98 29.99 68.60 2.06 54.04 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 7 C -0.35 -20.16 9.49 84.03 0.80 -19.36 16 8 H 0.06 3.23 7.94 -2.91 -0.02 3.20 16 9 N -0.62 -31.93 2.86 -699.94 -2.00 -33.93 16 10 C 0.16 8.39 4.66 86.22 0.40 8.80 16 11 C -0.13 -5.27 5.64 30.53 0.17 -5.10 16 12 C 0.18 6.47 2.42 45.02 0.11 6.58 16 13 N -0.73 -20.16 5.08 -457.68 -2.33 -22.49 16 14 C 0.70 21.27 8.52 179.05 1.53 22.80 16 15 O -0.64 -26.03 15.67 -3.98 -0.06 -26.10 16 16 N -0.72 -15.20 4.36 -454.35 -1.98 -17.18 16 17 C 0.16 3.08 3.10 45.72 0.14 3.22 16 18 H 0.06 1.57 7.59 -2.39 -0.02 1.55 16 19 C -0.13 -2.38 6.60 31.36 0.21 -2.17 16 20 C -0.12 -1.24 6.83 31.70 0.22 -1.02 16 21 C -0.11 -0.91 5.67 31.88 0.18 -0.73 16 22 C -0.09 -1.01 2.81 -9.72 -0.03 -1.04 16 23 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 24 C -0.11 -1.47 4.11 30.60 0.13 -1.35 16 25 C 0.08 0.79 6.93 71.98 0.50 1.29 16 26 O -0.60 -8.44 13.66 -148.98 -2.04 -10.48 16 27 C -0.12 -3.85 5.55 30.67 0.17 -3.68 16 28 C 0.14 5.98 6.52 86.36 0.56 6.55 16 29 H 0.25 16.49 6.71 -92.71 -0.62 15.87 16 30 H 0.05 2.64 6.30 -2.39 -0.02 2.63 16 31 H 0.00 -0.23 7.87 -2.39 -0.02 -0.25 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.06 2.32 7.58 -2.38 -0.02 2.30 16 35 H 0.41 8.36 8.62 -92.71 -0.80 7.56 16 36 H 0.41 6.25 6.54 -92.70 -0.61 5.64 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.16 7.92 -2.39 -0.02 1.14 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 0.57 7.97 -2.39 -0.02 0.55 16 42 H 0.09 0.41 8.06 -2.39 -0.02 0.39 16 43 H 0.07 0.90 6.40 -2.39 -0.02 0.89 16 44 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.07 0.42 7.56 -2.39 -0.02 0.41 16 47 H 0.40 1.92 9.12 -74.06 -0.68 1.24 16 48 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 49 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 50 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 Total: -1.00 -79.34 392.54 -1.60 -80.94 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -1.00 Total: 24.46 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.48 Total: 10.47 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -6.04 Total: -133.34 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -2.10 Total: -36.58 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.06 Total: 54.04 kcal Total: -79.34 -1.60 -80.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614712172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.429 kcal (2) G-P(sol) polarization free energy of solvation -79.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds