Wall clock time and date at job start Fri Apr 10 2020 18:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86794 * 120.00253 * 2 1 4 4 H 1.48500 * 109.47028 * 274.06552 * 3 2 1 5 5 H 1.48497 * 109.47090 * 34.06586 * 3 2 1 6 6 H 1.48505 * 109.47140 * 154.06839 * 3 2 1 7 7 C 1.38813 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00202 * 197.50709 * 7 2 1 9 9 N 1.36937 * 119.99941 * 17.50056 * 7 2 1 10 10 C 1.46926 * 120.63134 * 207.96006 * 9 7 2 11 11 C 1.53194 * 108.77833 * 233.63128 * 10 9 7 12 12 C 1.53039 * 109.31453 * 305.36857 * 11 10 9 13 13 N 1.46493 * 109.46294 * 181.38264 * 12 11 10 14 14 C 1.34780 * 120.00193 * 154.96987 * 13 12 11 15 15 O 1.21590 * 119.99740 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00025 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00027 * 180.02562 * 16 14 13 18 18 H 1.09001 * 110.43539 * 323.91109 * 17 16 14 19 19 C 1.54267 * 110.48650 * 86.45384 * 17 16 14 20 20 C 1.53871 * 106.59991 * 142.29019 * 19 17 16 21 21 C 1.54274 * 106.59810 * 359.97438 * 20 19 17 22 22 C 1.54891 * 104.31236 * 336.32614 * 21 20 19 23 23 H 1.08998 * 110.75540 * 279.69460 * 22 21 20 24 24 C 1.53000 * 110.75486 * 156.32528 * 22 21 20 25 25 C 1.52998 * 109.47216 * 66.45151 * 24 22 21 26 26 O 1.42903 * 109.46710 * 179.97438 * 25 24 22 27 27 C 1.53040 * 109.52705 * 61.36762 * 12 11 10 28 28 C 1.46930 * 120.63279 * 27.98856 * 9 7 2 29 29 H 0.97002 * 119.99879 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.58755 * 113.84441 * 10 9 7 31 31 H 1.09005 * 109.58835 * 353.42074 * 10 9 7 32 32 H 1.08999 * 109.49609 * 185.41305 * 11 10 9 33 33 H 1.09007 * 109.52182 * 65.33609 * 11 10 9 34 34 H 1.09007 * 109.46026 * 301.35536 * 12 11 10 35 35 H 0.97005 * 119.99976 * 334.97375 * 13 12 11 36 36 H 0.97005 * 120.00145 * 0.02562 * 16 14 13 37 37 H 1.08993 * 110.02909 * 23.00511 * 19 17 16 38 38 H 1.09008 * 110.02985 * 261.57194 * 19 17 16 39 39 H 1.08997 * 110.03561 * 240.71829 * 20 19 17 40 40 H 1.08999 * 110.03486 * 119.27966 * 20 19 17 41 41 H 1.08997 * 110.48270 * 95.06792 * 21 20 19 42 42 H 1.08994 * 110.48343 * 217.58163 * 21 20 19 43 43 H 1.09002 * 109.46605 * 186.45037 * 24 22 21 44 44 H 1.09000 * 109.46779 * 306.44804 * 24 22 21 45 45 H 1.08999 * 109.47148 * 300.00022 * 25 24 22 46 46 H 1.08997 * 109.47134 * 60.00434 * 25 24 22 47 47 H 0.96699 * 113.99574 * 179.97438 * 26 25 24 48 48 H 1.08994 * 109.49923 * 58.58156 * 27 12 11 49 49 H 1.09006 * 109.49836 * 178.67840 * 27 12 11 50 50 H 1.08999 * 109.58563 * 246.15861 * 28 9 7 51 51 H 1.09000 * 109.58400 * 6.57722 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4117 2.0959 -1.3966 5 1 1.4933 2.6262 0.7842 6 1 3.5881 1.4167 0.6123 7 6 2.0102 -1.2022 0.0005 8 1 3.0527 -1.2238 0.2819 9 7 1.3730 -2.3608 -0.3556 10 6 1.8149 -3.6542 0.1833 11 6 2.0769 -4.6112 -0.9840 12 6 0.8271 -4.6907 -1.8636 13 7 1.0625 -5.6303 -2.9625 14 6 0.0221 -6.2504 -3.5537 15 8 -1.1121 -6.0296 -3.1751 16 7 0.2388 -7.1153 -4.5644 17 6 -0.8922 -7.7889 -5.2073 18 1 -1.6632 -8.0226 -4.4732 19 6 -1.4706 -6.9129 -6.3377 20 6 -1.8691 -7.8696 -7.4751 21 6 -1.5182 -9.2936 -6.9964 22 6 -0.4162 -9.0782 -5.9295 23 1 0.5535 -8.9214 -6.4020 24 6 -0.3633 -10.2595 -4.9586 25 6 0.1002 -11.5124 -5.7045 26 8 0.1502 -12.6155 -4.7974 27 6 0.5147 -3.3058 -2.4351 28 6 0.2347 -2.3342 -1.2843 29 1 -0.4850 0.8401 -0.0004 30 1 1.0378 -4.0669 0.8267 31 1 2.7320 -3.5173 0.7563 32 1 2.3125 -5.6022 -0.5961 33 1 2.9153 -4.2432 -1.5756 34 1 -0.0166 -5.0354 -1.2656 35 1 1.9674 -5.8063 -3.2647 36 1 1.1437 -7.2918 -4.8661 37 1 -0.7155 -6.2097 -6.6887 38 1 -2.3472 -6.3726 -5.9800 39 1 -1.3073 -7.6307 -8.3780 40 1 -2.9390 -7.7937 -7.6693 41 1 -2.3908 -9.7725 -6.5522 42 1 -1.1363 -9.8910 -7.8242 43 1 0.3364 -10.0366 -4.1530 44 1 -1.3554 -10.4313 -4.5411 45 1 -0.5993 -11.7353 -6.5101 46 1 1.0923 -11.3405 -6.1219 47 1 0.4365 -13.4454 -5.2029 48 1 1.3677 -2.9497 -3.0126 49 1 -0.3617 -3.3675 -3.0802 50 1 -0.6713 -2.6390 -0.7606 51 1 0.1091 -1.3261 -1.6795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614712173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:19 Heat of formation + Delta-G solvation = -81.672393 kcal Electronic energy + Delta-G solvation = -28349.129486 eV Core-core repulsion = 24475.881928 eV Total energy + Delta-G solvation = -3873.247558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.23462 -38.83405 -37.39158 -36.93332 -34.29990 -33.72549 -32.43755 -31.95914 -29.99139 -29.45250 -27.63523 -27.08073 -24.86025 -22.91930 -22.21591 -22.06619 -20.89973 -20.58705 -20.01904 -19.32369 -18.08844 -17.59939 -16.94754 -16.60454 -15.70843 -15.33699 -15.15450 -14.75019 -14.71960 -14.38593 -14.16226 -13.78835 -13.65916 -13.51159 -13.43797 -12.98058 -12.76098 -12.64523 -12.31580 -12.11659 -11.81212 -11.52954 -11.44432 -11.41376 -11.09275 -11.07624 -10.89795 -10.86670 -10.71958 -10.64687 -10.33864 -10.32673 -10.18403 -10.05155 -9.90866 -9.71213 -9.50130 -9.06501 -8.56245 -8.34422 -6.65282 -5.75264 -3.18033 2.85529 3.39863 3.44883 3.46579 3.48201 3.71154 4.16413 4.33076 4.46461 4.50606 4.52128 4.73337 4.86937 5.02195 5.07671 5.11287 5.20263 5.26895 5.33214 5.35410 5.39580 5.44088 5.50903 5.59949 5.67828 5.70535 5.76581 5.83573 5.89502 5.95581 6.03700 6.10657 6.14751 6.28961 6.42915 6.51216 6.57747 6.65596 6.70137 6.82244 6.96320 7.00878 7.18475 7.21858 7.43582 7.72570 7.82927 8.22821 8.48377 8.85438 9.24272 9.87784 10.44767 11.33239 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.002274 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.138364 B =12311.144875 C =13072.401398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.169 3.831 13 N -0.741 5.741 14 C 0.702 3.298 15 O -0.588 6.588 16 N -0.746 5.746 17 C 0.169 3.831 18 H 0.094 0.906 19 C -0.138 4.138 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.096 4.096 23 H 0.082 0.918 24 C -0.112 4.112 25 C 0.076 3.924 26 O -0.576 6.576 27 C -0.146 4.146 28 C 0.174 3.826 29 H 0.254 0.746 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.389 0.611 36 H 0.392 0.608 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.378 0.622 48 H 0.052 0.948 49 H 0.053 0.947 50 H 0.021 0.979 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -22.805 -16.563 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.065 3.935 13 N -0.394 5.394 14 C 0.402 3.598 15 O -0.465 6.465 16 N -0.401 5.401 17 C 0.063 3.937 18 H 0.112 0.888 19 C -0.177 4.177 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.115 4.115 23 H 0.101 0.899 24 C -0.150 4.150 25 C -0.002 4.002 26 O -0.381 6.381 27 C -0.186 4.186 28 C 0.047 3.953 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.222 0.778 36 H 0.225 0.775 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.039 0.961 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.063 -21.956 -15.725 27.007 hybrid contribution 1.496 0.346 -0.855 1.758 sum 1.560 -21.610 -16.580 27.283 Atomic orbital electron populations 1.70047 1.05258 1.25495 1.53657 1.25061 0.95274 0.98452 1.00916 0.86278 0.79137 0.83806 0.77559 1.21526 1.21798 1.20410 1.19188 0.92722 0.84875 1.41536 0.91639 1.44116 1.36407 1.01416 1.49627 1.20842 0.97951 0.86728 0.92337 1.22340 0.96836 0.99648 0.99000 1.20888 0.98477 0.88209 0.85920 1.45528 1.07723 1.47386 1.38752 1.16028 0.85290 0.78954 0.79576 1.90929 1.21233 1.67695 1.66678 1.45190 1.09560 1.47731 1.37631 1.21692 0.88402 0.89785 0.93836 0.88812 1.22578 1.01727 0.98226 0.95167 1.22090 1.01423 0.94392 0.98147 1.22406 0.98219 0.97214 0.97852 1.22377 0.99626 0.93706 0.95760 0.89930 1.21504 1.03026 0.92142 0.98319 1.22217 0.99305 0.86900 0.91732 1.86504 1.91341 1.20602 1.39649 1.22565 1.00384 0.95281 1.00397 1.20757 0.88726 0.98128 0.87654 0.93609 0.96165 0.92372 0.92701 0.91973 0.90126 0.77833 0.77465 0.91352 0.90964 0.91789 0.91581 0.91031 0.91386 0.90922 0.90841 0.93534 0.93831 0.77492 0.92887 0.92871 0.96120 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 11.22 55.49 0.62 -26.03 16 2 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 3 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -15.03 2.99 -172.31 -0.52 -15.55 16 10 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 11 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 12 C 0.17 3.04 2.42 -67.89 -0.16 2.87 16 13 N -0.74 -10.70 5.08 -58.64 -0.30 -11.00 16 14 C 0.70 10.81 8.53 -86.92 -0.74 10.06 16 15 O -0.59 -11.78 15.71 5.29 0.08 -11.70 16 16 N -0.75 -8.08 5.12 -56.86 -0.29 -8.37 16 17 C 0.17 1.69 2.62 -66.07 -0.17 1.52 16 18 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 19 C -0.14 -1.35 6.53 -25.61 -0.17 -1.52 16 20 C -0.12 -0.88 6.80 -25.61 -0.17 -1.05 16 21 C -0.12 -0.73 5.46 -25.07 -0.14 -0.87 16 22 C -0.10 -0.66 2.53 -88.42 -0.22 -0.88 16 23 H 0.08 0.49 8.03 -51.93 -0.42 0.07 16 24 C -0.11 -0.87 5.10 -26.73 -0.14 -1.01 16 25 C 0.08 0.49 6.90 37.16 0.26 0.74 16 26 O -0.58 -4.51 13.66 -35.23 -0.48 -4.99 16 27 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 28 C 0.17 4.32 5.31 -3.71 -0.02 4.30 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 35 H 0.39 4.38 8.62 -40.82 -0.35 4.03 16 36 H 0.39 3.10 8.55 -40.82 -0.35 2.75 16 37 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 38 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.45 8.01 -51.93 -0.42 0.04 16 42 H 0.07 0.33 8.02 -51.93 -0.42 -0.09 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.05 0.24 7.40 -51.93 -0.38 -0.14 16 46 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.38 1.19 9.12 45.56 0.42 1.60 16 48 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -34.30 397.88 -10.62 -44.92 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -8.47 Total: 5.44 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -2.23 Total: 4.44 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.48 Total: -60.94 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.40 Total: -16.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.30 -10.62 -44.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614712173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.757 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds