Wall clock time and date at job start Fri Apr 10 2020 18:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86794 * 120.00253 * 2 1 4 4 H 1.48500 * 109.47028 * 274.06552 * 3 2 1 5 5 H 1.48497 * 109.47090 * 34.06586 * 3 2 1 6 6 H 1.48505 * 109.47140 * 154.06839 * 3 2 1 7 7 C 1.38813 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00202 * 197.50709 * 7 2 1 9 9 N 1.36937 * 119.99941 * 17.50056 * 7 2 1 10 10 C 1.46926 * 120.63134 * 207.96006 * 9 7 2 11 11 C 1.53194 * 108.77833 * 233.63128 * 10 9 7 12 12 C 1.53039 * 109.31453 * 305.36857 * 11 10 9 13 13 N 1.46493 * 109.46294 * 181.38264 * 12 11 10 14 14 C 1.34780 * 120.00193 * 154.96987 * 13 12 11 15 15 O 1.21590 * 119.99740 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00025 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00027 * 180.02562 * 16 14 13 18 18 H 1.09001 * 110.43539 * 323.91109 * 17 16 14 19 19 C 1.54267 * 110.48650 * 86.45384 * 17 16 14 20 20 C 1.53871 * 106.59991 * 142.29019 * 19 17 16 21 21 C 1.54274 * 106.59810 * 359.97438 * 20 19 17 22 22 C 1.54891 * 104.31236 * 336.32614 * 21 20 19 23 23 H 1.08998 * 110.75540 * 279.69460 * 22 21 20 24 24 C 1.53000 * 110.75486 * 156.32528 * 22 21 20 25 25 C 1.52998 * 109.47216 * 66.45151 * 24 22 21 26 26 O 1.42903 * 109.46710 * 179.97438 * 25 24 22 27 27 C 1.53040 * 109.52705 * 61.36762 * 12 11 10 28 28 C 1.46930 * 120.63279 * 27.98856 * 9 7 2 29 29 H 0.97002 * 119.99879 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.58755 * 113.84441 * 10 9 7 31 31 H 1.09005 * 109.58835 * 353.42074 * 10 9 7 32 32 H 1.08999 * 109.49609 * 185.41305 * 11 10 9 33 33 H 1.09007 * 109.52182 * 65.33609 * 11 10 9 34 34 H 1.09007 * 109.46026 * 301.35536 * 12 11 10 35 35 H 0.97005 * 119.99976 * 334.97375 * 13 12 11 36 36 H 0.97005 * 120.00145 * 0.02562 * 16 14 13 37 37 H 1.08993 * 110.02909 * 23.00511 * 19 17 16 38 38 H 1.09008 * 110.02985 * 261.57194 * 19 17 16 39 39 H 1.08997 * 110.03561 * 240.71829 * 20 19 17 40 40 H 1.08999 * 110.03486 * 119.27966 * 20 19 17 41 41 H 1.08997 * 110.48270 * 95.06792 * 21 20 19 42 42 H 1.08994 * 110.48343 * 217.58163 * 21 20 19 43 43 H 1.09002 * 109.46605 * 186.45037 * 24 22 21 44 44 H 1.09000 * 109.46779 * 306.44804 * 24 22 21 45 45 H 1.08999 * 109.47148 * 300.00022 * 25 24 22 46 46 H 1.08997 * 109.47134 * 60.00434 * 25 24 22 47 47 H 0.96699 * 113.99574 * 179.97438 * 26 25 24 48 48 H 1.08994 * 109.49923 * 58.58156 * 27 12 11 49 49 H 1.09006 * 109.49836 * 178.67840 * 27 12 11 50 50 H 1.08999 * 109.58563 * 246.15861 * 28 9 7 51 51 H 1.09000 * 109.58400 * 6.57722 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4117 2.0959 -1.3966 5 1 1.4933 2.6262 0.7842 6 1 3.5881 1.4167 0.6123 7 6 2.0102 -1.2022 0.0005 8 1 3.0527 -1.2238 0.2819 9 7 1.3730 -2.3608 -0.3556 10 6 1.8149 -3.6542 0.1833 11 6 2.0769 -4.6112 -0.9840 12 6 0.8271 -4.6907 -1.8636 13 7 1.0625 -5.6303 -2.9625 14 6 0.0221 -6.2504 -3.5537 15 8 -1.1121 -6.0296 -3.1751 16 7 0.2388 -7.1153 -4.5644 17 6 -0.8922 -7.7889 -5.2073 18 1 -1.6632 -8.0226 -4.4732 19 6 -1.4706 -6.9129 -6.3377 20 6 -1.8691 -7.8696 -7.4751 21 6 -1.5182 -9.2936 -6.9964 22 6 -0.4162 -9.0782 -5.9295 23 1 0.5535 -8.9214 -6.4020 24 6 -0.3633 -10.2595 -4.9586 25 6 0.1002 -11.5124 -5.7045 26 8 0.1502 -12.6155 -4.7974 27 6 0.5147 -3.3058 -2.4351 28 6 0.2347 -2.3342 -1.2843 29 1 -0.4850 0.8401 -0.0004 30 1 1.0378 -4.0669 0.8267 31 1 2.7320 -3.5173 0.7563 32 1 2.3125 -5.6022 -0.5961 33 1 2.9153 -4.2432 -1.5756 34 1 -0.0166 -5.0354 -1.2656 35 1 1.9674 -5.8063 -3.2647 36 1 1.1437 -7.2918 -4.8661 37 1 -0.7155 -6.2097 -6.6887 38 1 -2.3472 -6.3726 -5.9800 39 1 -1.3073 -7.6307 -8.3780 40 1 -2.9390 -7.7937 -7.6693 41 1 -2.3908 -9.7725 -6.5522 42 1 -1.1363 -9.8910 -7.8242 43 1 0.3364 -10.0366 -4.1530 44 1 -1.3554 -10.4313 -4.5411 45 1 -0.5993 -11.7353 -6.5101 46 1 1.0923 -11.3405 -6.1219 47 1 0.4365 -13.4454 -5.2029 48 1 1.3677 -2.9497 -3.0126 49 1 -0.3617 -3.3675 -3.0802 50 1 -0.6713 -2.6390 -0.7606 51 1 0.1091 -1.3261 -1.6795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614712173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:18 Heat of formation + Delta-G solvation = -107.596216 kcal Electronic energy + Delta-G solvation = -28350.253628 eV Core-core repulsion = 24475.881928 eV Total energy + Delta-G solvation = -3874.371700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.36513 -39.82389 -38.82478 -37.59509 -35.95746 -34.83396 -33.74009 -33.04105 -31.73573 -31.16568 -28.50649 -27.74497 -26.71390 -23.97119 -23.86185 -23.32122 -22.06228 -21.37317 -21.16804 -20.68589 -19.23926 -18.67937 -18.19080 -17.79916 -16.90702 -16.45058 -16.23845 -16.06743 -15.73697 -15.68946 -15.35755 -15.22506 -14.93113 -14.76227 -14.47797 -14.30607 -14.18116 -14.03458 -13.42462 -13.18189 -13.02342 -12.96877 -12.62416 -12.60324 -12.43759 -12.13474 -12.11354 -12.07822 -12.01190 -11.86505 -11.67559 -11.53294 -11.50382 -11.42274 -11.31305 -11.15777 -10.79315 -10.58870 -10.25190 -9.70187 -8.72356 -7.87396 -5.33803 1.47482 1.48768 1.58478 1.72920 2.20150 2.51657 3.21300 3.25278 3.32577 3.57024 3.66919 3.79436 3.88968 3.92549 4.10269 4.16421 4.34657 4.35569 4.45965 4.47821 4.48337 4.53086 4.58948 4.62183 4.67098 4.70530 4.78680 4.80356 4.86535 5.01358 5.04570 5.08746 5.10178 5.13461 5.18059 5.23280 5.25677 5.29647 5.31768 5.45452 5.49636 5.61692 5.64168 5.67631 5.68946 6.08599 6.38324 6.94933 7.12765 7.18481 7.66419 7.83893 8.37165 9.19833 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.002274 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.138364 B =12311.144875 C =13072.401398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.057 4.057 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.260 4.260 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.120 4.120 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.697 3.303 15 O -0.639 6.639 16 N -0.724 5.724 17 C 0.162 3.838 18 H 0.062 0.938 19 C -0.138 4.138 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.079 4.079 23 H 0.106 0.894 24 C -0.112 4.112 25 C 0.077 3.923 26 O -0.603 6.603 27 C -0.128 4.128 28 C 0.183 3.817 29 H 0.249 0.751 30 H 0.010 0.990 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.411 0.589 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.397 0.603 48 H 0.061 0.939 49 H 0.041 0.959 50 H -0.013 1.013 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -24.890 -18.722 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.252 4.252 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.187 1.187 7 C -0.390 4.390 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.159 4.159 12 C 0.075 3.925 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.521 6.521 16 N -0.380 5.380 17 C 0.057 3.943 18 H 0.080 0.920 19 C -0.177 4.177 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.098 4.098 23 H 0.125 0.875 24 C -0.150 4.150 25 C 0.000 4.000 26 O -0.412 6.412 27 C -0.169 4.169 28 C 0.056 3.944 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.247 0.753 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.247 0.753 48 H 0.080 0.920 49 H 0.060 0.940 50 H 0.005 0.995 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.050 -24.121 -17.932 30.211 hybrid contribution 0.543 0.928 -0.145 1.085 sum 3.593 -23.193 -18.077 29.624 Atomic orbital electron populations 1.70224 1.06964 1.25848 1.55501 1.25903 0.96010 1.01904 1.01347 0.85201 0.78303 0.79315 0.77326 1.21356 1.22486 1.18704 1.19591 0.93215 0.85813 1.40394 0.90734 1.44365 1.36142 1.02636 1.50149 1.21055 0.97875 0.85562 0.94004 1.22128 0.96230 1.00360 0.97206 1.20479 0.98298 0.87073 0.86606 1.45095 1.08720 1.46415 1.37830 1.16240 0.84512 0.79358 0.80168 1.90908 1.23441 1.69387 1.68324 1.44993 1.10975 1.46062 1.35965 1.21796 0.87711 0.91555 0.93285 0.91958 1.22540 1.00423 0.98656 0.96086 1.22064 1.01731 0.94219 0.97456 1.22415 0.97810 0.96753 0.98211 1.22288 1.01006 0.91227 0.95263 0.87545 1.21471 1.01619 0.93560 0.98305 1.22248 1.00638 0.85732 0.91419 1.86449 1.91655 1.22008 1.41075 1.22300 1.00113 0.96057 0.98403 1.20458 0.87880 0.97315 0.88708 0.94203 0.97168 0.91231 0.89149 0.90486 0.92984 0.75304 0.75184 0.91527 0.93947 0.90130 0.91598 0.91477 0.88694 0.92496 0.92730 0.91926 0.92054 0.75302 0.92033 0.94046 0.99472 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.77 11.22 21.65 0.24 -57.53 16 2 C -0.06 -3.23 4.90 84.86 0.42 -2.81 16 3 Si 0.97 45.45 29.59 68.60 2.03 47.48 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.26 -14.39 9.58 84.03 0.81 -13.58 16 8 H 0.08 3.92 7.89 -2.91 -0.02 3.90 16 9 N -0.61 -31.29 2.99 -699.07 -2.09 -33.38 16 10 C 0.14 5.79 6.52 86.36 0.56 6.35 16 11 C -0.12 -3.77 5.55 30.67 0.17 -3.60 16 12 C 0.18 6.41 2.42 45.02 0.11 6.52 16 13 N -0.73 -19.78 5.08 -457.69 -2.33 -22.11 16 14 C 0.70 21.26 8.53 179.05 1.53 22.79 16 15 O -0.64 -26.64 15.71 -4.00 -0.06 -26.70 16 16 N -0.72 -14.78 5.12 -452.06 -2.31 -17.09 16 17 C 0.16 3.19 2.62 46.20 0.12 3.31 16 18 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 19 C -0.14 -2.67 6.53 31.32 0.20 -2.47 16 20 C -0.12 -1.44 6.80 31.32 0.21 -1.23 16 21 C -0.11 -1.09 5.46 31.67 0.17 -0.91 16 22 C -0.08 -0.90 2.53 -9.37 -0.02 -0.93 16 23 H 0.11 0.79 8.03 -2.39 -0.02 0.77 16 24 C -0.11 -1.57 5.10 30.59 0.16 -1.41 16 25 C 0.08 0.76 6.90 71.98 0.50 1.26 16 26 O -0.60 -8.28 13.66 -148.98 -2.04 -10.32 16 27 C -0.13 -5.37 5.65 30.67 0.17 -5.19 16 28 C 0.18 9.53 5.31 86.36 0.46 9.99 16 29 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.07 2.68 7.93 -2.38 -0.02 2.66 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.05 2.18 7.58 -2.38 -0.02 2.16 16 35 H 0.41 7.85 8.62 -92.70 -0.80 7.05 16 36 H 0.41 5.31 8.55 -92.70 -0.79 4.51 16 37 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 38 H 0.04 1.05 8.14 -2.38 -0.02 1.04 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.73 8.01 -2.39 -0.02 0.71 16 42 H 0.09 0.48 8.02 -2.39 -0.02 0.46 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 45 H 0.06 0.43 7.40 -2.39 -0.02 0.41 16 46 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.40 1.63 9.12 -74.06 -0.68 0.95 16 48 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 50 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 51 H 0.05 3.18 6.06 -2.39 -0.01 3.16 16 Total: -1.00 -79.00 397.88 -2.33 -81.33 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -1.34 Total: 20.23 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 5.56 Total: 18.08 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -6.49 Total: -130.11 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -2.10 Total: -37.02 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -79.00 -2.33 -81.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614712173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.266 kcal (2) G-P(sol) polarization free energy of solvation -78.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds