Wall clock time and date at job start Fri Apr 10 2020 18:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00433 * 2 1 4 4 H 1.48497 * 109.47056 * 239.99949 * 3 2 1 5 5 H 1.48500 * 109.46761 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46923 * 119.99877 * 3 2 1 7 7 C 1.37883 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00060 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00252 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47230 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99771 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99923 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00064 * 179.97438 * 11 10 9 14 14 N 1.46897 * 109.47132 * 179.97438 * 13 11 10 15 15 C 1.46902 * 110.99729 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.47435 * 324.99958 * 15 14 13 17 17 C 1.53000 * 109.46954 * 85.00912 * 15 14 13 18 18 C 1.52999 * 109.47067 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47034 * 299.99377 * 18 17 15 20 20 C 1.53009 * 109.46806 * 60.00299 * 19 18 17 21 21 C 1.52999 * 109.47080 * 299.99673 * 20 19 18 22 22 H 1.09001 * 109.47578 * 300.00320 * 21 20 19 23 23 N 1.46904 * 109.47206 * 179.97438 * 21 20 19 24 24 C 1.47016 * 110.99469 * 71.75169 * 23 21 20 25 25 C 1.53095 * 109.25494 * 177.60649 * 24 23 21 26 26 O 1.43016 * 109.25965 * 56.85014 * 25 24 23 27 27 C 1.43019 * 113.73815 * 301.33107 * 26 25 24 28 28 C 1.47009 * 110.99762 * 308.11781 * 23 21 20 29 29 H 0.96998 * 119.99853 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46818 * 59.99358 * 9 7 2 31 31 H 1.09006 * 109.46685 * 300.00120 * 9 7 2 32 32 H 0.96993 * 120.00356 * 0.02562 * 10 9 7 33 33 H 1.08997 * 109.46955 * 300.00309 * 13 11 10 34 34 H 1.09000 * 109.46595 * 60.00368 * 13 11 10 35 35 H 1.00897 * 111.00746 * 303.95818 * 14 13 11 36 36 H 1.09004 * 109.46664 * 299.99665 * 17 15 14 37 37 H 1.08991 * 109.47313 * 59.99498 * 17 15 14 38 38 H 1.08998 * 109.47292 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.47095 * 59.99711 * 18 17 15 40 40 H 1.08991 * 109.47154 * 300.00403 * 19 18 17 41 41 H 1.09000 * 109.47538 * 179.97438 * 19 18 17 42 42 H 1.09004 * 109.46785 * 179.97438 * 20 19 18 43 43 H 1.09001 * 109.47176 * 60.00238 * 20 19 18 44 44 H 1.08995 * 109.50942 * 297.54351 * 24 23 21 45 45 H 1.08996 * 109.50484 * 57.67453 * 24 23 21 46 46 H 1.09006 * 109.51151 * 296.91581 * 25 24 23 47 47 H 1.08995 * 109.50957 * 176.78190 * 25 24 23 48 48 H 1.09003 * 109.50476 * 298.72976 * 27 26 25 49 49 H 1.08997 * 109.50923 * 178.60214 * 27 26 25 50 50 H 1.08998 * 109.50851 * 302.32298 * 28 23 21 51 51 H 1.09003 * 109.51041 * 62.41680 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0020 13 6 2.7329 -6.0289 0.0005 14 7 1.9984 -7.3011 0.0018 15 6 2.9228 -8.4427 0.0007 16 1 3.8048 -8.1955 -0.5901 17 6 3.3434 -8.7597 1.4372 18 6 4.3068 -9.9484 1.4360 19 6 3.6114 -11.1678 0.8274 20 6 3.1907 -10.8507 -0.6092 21 6 2.2274 -9.6621 -0.6080 22 1 1.3454 -9.9098 -0.0174 23 7 1.8240 -9.3573 -1.9873 24 6 0.9159 -10.3883 -2.5105 25 6 0.4743 -10.0017 -3.9245 26 8 1.6300 -9.8291 -4.7490 27 6 2.5360 -8.8319 -4.2691 28 6 2.9985 -9.2067 -2.8585 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 3.1566 -3.4356 0.0009 33 1 3.3589 -5.9713 -0.8900 34 1 3.3602 -5.9711 0.8900 35 1 1.3627 -7.3509 0.7838 36 1 3.8392 -7.8911 1.8706 37 1 2.4614 -9.0070 2.0278 38 1 4.6068 -10.1740 2.4593 39 1 5.1888 -9.7006 0.8453 40 1 2.7295 -11.4154 1.4179 41 1 4.2978 -12.0145 0.8260 42 1 2.6957 -11.7196 -1.0430 43 1 4.0728 -10.6031 -1.1998 44 1 1.4327 -11.3475 -2.5402 45 1 0.0415 -10.4651 -1.8644 46 1 -0.0891 -9.0692 -3.8877 47 1 -0.1534 -10.7908 -4.3384 48 1 2.0326 -7.8654 -4.2423 49 1 3.3993 -8.7750 -4.9321 50 1 3.6442 -8.4209 -2.4664 51 1 3.5490 -10.1468 -2.8932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769802839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:37 Heat of formation + Delta-G solvation = -110.163796 kcal Electronic energy + Delta-G solvation = -28916.273375 eV Core-core repulsion = 25041.790337 eV Total energy + Delta-G solvation = -3874.483038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28662 -40.39155 -39.24402 -36.34281 -35.99854 -35.40994 -34.31327 -32.11589 -30.99678 -30.77467 -29.31345 -27.30463 -26.26282 -25.05108 -24.33965 -23.44268 -22.29254 -21.54401 -21.31912 -20.26491 -18.94032 -17.85081 -17.42357 -17.14497 -17.03504 -16.68605 -16.21366 -16.13799 -16.02526 -15.91572 -15.41064 -15.36875 -15.18647 -15.01010 -14.56274 -14.39362 -14.03535 -13.84854 -13.78665 -13.54858 -13.34310 -13.07598 -12.96143 -12.90599 -12.65806 -12.52576 -12.51079 -12.23233 -12.02256 -11.83014 -11.74898 -11.50673 -11.47009 -11.32757 -11.17646 -10.78281 -10.69504 -10.57164 -9.78679 -9.12026 -9.01415 -8.28224 -6.45105 1.43124 1.47456 1.55622 1.85199 2.31243 2.53262 2.81325 2.99953 3.06396 3.32118 3.72513 3.84949 3.98858 4.02593 4.09138 4.10458 4.14924 4.22711 4.26244 4.32785 4.35466 4.38723 4.43881 4.48843 4.53275 4.61702 4.68491 4.75690 4.81857 4.83328 4.89817 4.98442 5.03245 5.09100 5.13995 5.16736 5.18157 5.25932 5.26296 5.32922 5.46829 5.50711 5.71964 5.86530 6.08869 6.12189 6.20869 6.23870 6.48775 6.66433 6.99002 7.24710 7.57233 8.83864 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.002690 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.174286 B =10406.426830 C =11618.068797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.493 3.507 12 O -0.591 6.591 13 C 0.062 3.938 14 N -0.665 5.665 15 C 0.105 3.895 16 H 0.083 0.917 17 C -0.148 4.148 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.144 4.144 21 C 0.104 3.896 22 H 0.071 0.929 23 N -0.528 5.528 24 C 0.023 3.977 25 C 0.061 3.939 26 O -0.403 6.403 27 C 0.060 3.940 28 C 0.024 3.976 29 H 0.268 0.732 30 H -0.017 1.017 31 H -0.015 1.015 32 H 0.407 0.593 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.340 0.660 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.113 0.887 48 H 0.042 0.958 49 H 0.112 0.888 50 H 0.087 0.913 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.641 -25.361 -1.211 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.362 5.362 11 C 0.280 3.720 12 O -0.471 6.471 13 C -0.070 4.070 14 N -0.295 5.295 15 C -0.005 4.005 16 H 0.101 0.899 17 C -0.188 4.188 18 C -0.149 4.149 19 C -0.150 4.150 20 C -0.183 4.183 21 C -0.005 4.005 22 H 0.090 0.910 23 N -0.251 5.251 24 C -0.106 4.106 25 C -0.015 4.015 26 O -0.322 6.322 27 C -0.017 4.017 28 C -0.104 4.104 29 H 0.077 0.923 30 H 0.001 0.999 31 H 0.003 0.997 32 H 0.243 0.757 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.131 0.869 48 H 0.060 0.940 49 H 0.130 0.870 50 H 0.105 0.895 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.300 -25.029 -2.085 27.541 hybrid contribution 0.609 0.659 1.149 1.458 sum 11.909 -24.370 -0.936 27.140 Atomic orbital electron populations 1.70138 1.08331 1.28607 1.49970 1.26089 0.95767 1.03968 0.93865 0.85206 0.77908 0.76561 0.79536 1.18625 1.21157 1.18558 1.21607 0.94311 0.90612 1.52904 0.89766 1.18473 0.88697 0.84452 0.93788 1.46182 1.11048 1.05600 1.73340 1.21483 0.90020 0.84881 0.75620 1.90643 1.19416 1.85371 1.51703 1.21713 0.93895 0.87451 1.03961 1.60060 1.18867 0.99637 1.50968 1.21607 0.94090 0.89484 0.95301 0.89928 1.22280 1.00241 0.99390 0.96848 1.21454 0.97908 0.94054 1.01492 1.21459 1.00589 0.98036 0.94918 1.22164 0.99853 0.98039 0.98287 1.21635 0.97199 0.93020 0.88656 0.91036 1.62257 1.15920 1.45178 1.01782 1.22730 0.97687 0.93437 0.96701 1.22741 0.87516 1.01519 0.89758 1.87922 1.34147 1.59264 1.50878 1.22757 0.93484 0.90667 0.94775 1.22746 0.93012 1.01293 0.93373 0.92274 0.99909 0.99676 0.75718 0.86880 0.90342 0.84133 0.91571 0.91985 0.91139 0.91414 0.92073 0.90924 0.91854 0.91208 0.93532 0.89726 0.93801 0.86891 0.93970 0.86998 0.89524 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.99 42.46 29.54 68.60 2.03 44.49 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 15.01 5.43 85.63 0.46 15.47 16 10 N -0.71 -30.15 5.55 -466.78 -2.59 -32.74 16 11 C 0.49 19.77 7.87 87.66 0.69 20.46 16 12 O -0.59 -29.89 16.20 -3.04 -0.05 -29.94 16 13 C 0.06 1.62 5.97 85.56 0.51 2.13 16 14 N -0.66 -17.12 5.71 -495.57 -2.83 -19.95 16 15 C 0.11 1.89 1.77 44.92 0.08 1.97 16 16 H 0.08 1.40 6.23 -2.39 -0.01 1.39 16 17 C -0.15 -2.18 5.17 30.59 0.16 -2.02 16 18 C -0.11 -1.25 5.92 30.59 0.18 -1.07 16 19 C -0.11 -1.24 5.92 30.60 0.18 -1.06 16 20 C -0.14 -1.90 4.41 30.60 0.13 -1.77 16 21 C 0.10 1.84 1.84 44.92 0.08 1.92 16 22 H 0.07 1.42 8.01 -2.39 -0.02 1.40 16 23 N -0.53 -10.99 4.50 -869.98 -3.91 -14.91 16 24 C 0.02 0.43 5.41 86.31 0.47 0.89 16 25 C 0.06 1.26 7.01 72.01 0.50 1.76 16 26 O -0.40 -9.39 10.83 -148.98 -1.61 -11.00 16 27 C 0.06 1.24 7.01 72.02 0.50 1.74 16 28 C 0.02 0.44 4.76 86.32 0.41 0.85 16 29 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 30 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 31 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 32 H 0.41 14.07 8.32 -92.71 -0.77 13.29 16 33 H 0.11 2.55 8.05 -2.39 -0.02 2.53 16 34 H 0.08 1.64 7.44 -2.39 -0.02 1.62 16 35 H 0.34 9.65 8.17 -89.70 -0.73 8.92 16 36 H 0.07 0.98 7.45 -2.39 -0.02 0.97 16 37 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.86 6.81 -2.39 -0.02 0.84 16 43 H 0.07 0.91 6.37 -2.39 -0.02 0.89 16 44 H 0.05 0.80 6.80 -2.39 -0.02 0.78 16 45 H 0.08 1.56 8.07 -2.39 -0.02 1.54 16 46 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.09 1.53 6.45 -2.39 -0.02 1.52 16 51 H 0.05 0.83 6.36 -2.39 -0.02 0.82 16 Total: -1.00 -73.87 390.13 -4.19 -78.06 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: -0.58 Total: 31.05 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 5.07 Total: 11.60 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -9.05 Total: -124.25 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.66 Total: -40.95 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -73.87 -4.19 -78.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769802839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.108 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds