Wall clock time and date at job start Fri Apr 10 2020 18:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46657 * 2 1 4 4 C 1.53004 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47118 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47118 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47074 * 180.02562 * 6 5 4 8 8 C 1.34781 * 120.00242 * 180.02562 * 7 6 5 9 9 O 1.21346 * 119.99511 * 359.97438 * 8 7 6 10 10 C 1.49451 * 120.00373 * 180.02562 * 8 7 6 11 11 O 1.21348 * 119.99652 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99841 * 179.97438 * 10 8 7 13 13 C 1.46503 * 119.99376 * 179.97438 * 12 10 8 14 14 C 1.53065 * 109.44591 * 84.79556 * 13 12 10 15 15 C 1.53192 * 109.29648 * 181.23295 * 14 13 12 16 16 N 1.46922 * 108.89269 * 305.57538 * 15 14 13 17 17 C 1.36942 * 120.62796 * 233.51528 * 16 15 14 18 18 H 1.08007 * 119.99636 * 151.83092 * 17 16 15 19 19 C 1.38806 * 120.00203 * 331.83144 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08250 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07925 * 19 17 16 22 22 H 1.48503 * 109.47195 * 89.99708 * 21 19 17 23 23 H 1.48498 * 109.47355 * 210.00264 * 21 19 17 24 24 H 1.48504 * 109.46850 * 330.00278 * 21 19 17 25 25 C 1.46924 * 118.73925 * 53.53382 * 16 15 14 26 26 C 1.53049 * 109.45272 * 204.99544 * 13 12 10 27 27 H 1.09000 * 109.47554 * 59.99833 * 1 2 3 28 28 H 1.09007 * 109.47026 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47310 * 299.99461 * 1 2 3 30 30 H 1.09003 * 109.47310 * 240.00539 * 2 1 3 31 31 H 1.08993 * 109.47415 * 119.99800 * 2 1 3 32 32 H 1.09003 * 109.47254 * 60.00551 * 3 2 1 33 33 H 1.08992 * 109.47470 * 299.99700 * 3 2 1 34 34 H 1.09003 * 109.47227 * 60.00478 * 4 3 2 35 35 H 1.09000 * 109.47454 * 300.00217 * 4 3 2 36 36 H 1.08994 * 109.47264 * 60.00199 * 5 4 3 37 37 H 1.08999 * 109.47506 * 300.00052 * 5 4 3 38 38 H 1.09003 * 109.46756 * 60.00167 * 6 5 4 39 39 H 1.09000 * 109.47454 * 300.00150 * 6 5 4 40 40 H 0.97005 * 120.00355 * 0.02562 * 7 6 5 41 41 H 0.96995 * 120.00047 * 359.97438 * 12 10 8 42 42 H 1.08996 * 109.45813 * 324.96250 * 13 12 10 43 43 H 1.09005 * 109.39523 * 61.35360 * 14 13 12 44 44 H 1.09004 * 109.62174 * 301.25047 * 14 13 12 45 45 H 1.09003 * 109.58615 * 185.71531 * 15 14 13 46 46 H 1.08998 * 109.58372 * 65.43477 * 15 14 13 47 47 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 48 48 H 1.09007 * 109.58325 * 66.18371 * 25 16 15 49 49 H 1.08996 * 109.58499 * 186.46256 * 25 16 15 50 50 H 1.09002 * 109.49883 * 58.67895 * 26 13 12 51 51 H 1.08997 * 109.52642 * 298.59203 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6099 2.8852 -0.0013 7 7 6.0981 4.2664 -0.0001 8 6 7.4232 4.5128 -0.0014 9 8 8.2118 3.5904 -0.0032 10 6 7.9214 5.9218 0.0004 11 8 7.1327 6.8441 0.0027 12 7 9.2464 6.1681 -0.0004 13 6 9.7346 7.5493 0.0008 14 6 9.7822 8.0717 1.4388 15 6 10.2637 9.5260 1.4335 16 7 11.5454 9.6001 0.7190 17 6 12.6397 10.1763 1.3071 18 1 13.6331 9.8547 1.0310 19 6 12.4722 11.1734 2.2581 20 7 11.3182 11.7983 2.3603 21 14 13.8844 11.6285 3.3930 22 1 14.6944 12.7049 2.7682 23 1 13.3425 12.1063 4.6904 24 1 14.7389 10.4358 3.6225 25 6 11.6305 9.0448 -0.6386 26 6 11.1372 7.5948 -0.6101 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9290 -0.8909 35 1 3.9337 0.9287 0.8891 36 1 3.7169 3.3984 0.8904 37 1 3.7161 3.3995 -0.8895 38 1 5.9724 2.3720 -0.8920 39 1 5.9740 2.3707 0.8880 40 1 5.4678 5.0037 0.0017 41 1 9.8767 5.4308 -0.0018 42 1 9.0618 8.1728 -0.5879 43 1 10.4720 7.4622 2.0227 44 1 8.7869 8.0196 1.8803 45 1 10.3965 9.8707 2.4590 46 1 9.5278 10.1527 0.9298 47 1 11.2013 12.4953 3.0245 48 1 11.0054 9.6304 -1.3128 49 1 12.6648 9.0744 -0.9812 50 1 11.1043 7.2016 -1.6262 51 1 11.8164 6.9912 -0.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774526245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:47 Heat of formation + Delta-G solvation = -83.297738 kcal Electronic energy + Delta-G solvation = -27075.175885 eV Core-core repulsion = 23201.857847 eV Total energy + Delta-G solvation = -3873.318039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.64822 -38.85600 -37.32454 -37.14676 -35.43072 -34.44429 -32.59567 -32.12435 -30.13974 -29.57361 -28.74034 -25.90352 -24.75149 -23.35010 -22.28364 -21.83175 -21.70913 -21.35402 -20.18924 -19.49486 -18.25985 -16.90311 -16.75880 -16.62498 -15.89246 -15.65198 -15.38503 -15.01479 -14.75575 -14.31818 -14.07166 -13.94668 -13.71277 -13.55253 -13.52895 -13.20169 -13.02280 -12.70554 -12.59501 -12.44488 -12.06691 -12.01594 -11.69073 -11.51831 -11.41392 -11.27836 -11.13943 -11.08557 -10.95848 -10.95459 -10.71892 -10.43168 -10.28241 -10.10205 -9.79877 -9.77529 -9.47105 -9.42836 -8.84601 -8.45075 -6.69827 -5.79764 -3.22781 1.44465 2.35403 3.25605 3.37467 3.44746 3.46976 3.64712 4.19710 4.39589 4.45284 4.49017 4.55277 4.63483 4.74849 4.88581 4.98380 5.16520 5.23835 5.27718 5.30955 5.33166 5.38272 5.42456 5.45042 5.53165 5.57148 5.62758 5.62985 5.75890 5.77320 5.86949 5.91171 6.00422 6.03012 6.18689 6.23740 6.37431 6.53551 6.62643 6.70699 6.75139 6.90642 6.95475 7.33711 7.43593 7.65677 7.74331 7.78925 8.08900 8.43982 9.19824 9.82985 10.39420 11.28974 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.031832 B = 0.001692 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.406037 B =16544.797121 C =16888.271471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.134 4.134 6 C 0.117 3.883 7 N -0.705 5.705 8 C 0.507 3.493 9 O -0.523 6.523 10 C 0.502 3.498 11 O -0.523 6.523 12 N -0.691 5.691 13 C 0.148 3.852 14 C -0.148 4.148 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.256 4.256 18 H 0.066 0.934 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.149 3.851 26 C -0.140 4.140 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.413 0.587 41 H 0.407 0.593 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.022 0.978 47 H 0.254 0.746 48 H 0.021 0.979 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.308 -21.483 -5.842 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.172 4.172 6 C -0.007 4.007 7 N -0.359 5.359 8 C 0.288 3.712 9 O -0.399 6.399 10 C 0.282 3.718 11 O -0.399 6.399 12 N -0.342 5.342 13 C 0.045 3.955 14 C -0.188 4.188 15 C 0.048 3.952 16 N -0.315 5.315 17 C -0.385 4.385 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.022 3.978 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.250 0.750 41 H 0.243 0.757 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.040 0.960 47 H 0.064 0.936 48 H 0.039 0.961 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.326 -21.330 -5.726 28.070 hybrid contribution 0.613 0.231 0.652 0.924 sum -16.712 -21.099 -5.075 27.390 Atomic orbital electron populations 1.21783 0.95901 1.01600 1.01847 1.21539 0.95879 0.96878 1.02061 1.21623 0.94988 0.96908 1.02299 1.21513 0.95680 0.95638 1.02660 1.21835 0.93713 0.98301 1.03301 1.21497 0.94129 0.82159 1.02872 1.45789 1.06814 1.09819 1.73446 1.20399 0.83265 0.90014 0.77509 1.90749 1.55286 1.45874 1.47956 1.19993 0.84096 0.88874 0.78843 1.90770 1.55177 1.45372 1.48571 1.46198 1.05939 1.10812 1.71221 1.21246 0.95766 0.79722 0.98728 1.22602 1.00395 1.01455 0.94347 1.20755 0.86100 0.88822 0.99566 1.44097 1.09026 1.67707 1.10659 1.19170 0.86448 1.13549 1.19340 0.91619 1.25056 0.96959 0.95924 1.01574 1.70029 1.24091 1.24582 1.35863 0.86310 0.81795 0.78260 0.80471 1.21362 1.21558 1.20473 1.20842 0.98830 0.89842 0.88326 1.22362 0.94817 1.01368 0.99436 0.92757 0.92825 0.92735 0.92032 0.92012 0.91844 0.91875 0.91548 0.91527 0.90909 0.90959 0.90998 0.90976 0.75034 0.75725 0.89587 0.92394 0.92712 0.89147 0.96024 0.93565 0.96109 0.92152 0.92366 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.15 0.37 -0.33 16 2 C -0.13 -0.59 5.93 -26.73 -0.16 -0.75 16 3 C -0.12 -0.58 5.21 -26.73 -0.14 -0.72 16 4 C -0.12 -0.58 5.21 -26.73 -0.14 -0.72 16 5 C -0.13 -0.74 5.33 -26.73 -0.14 -0.89 16 6 C 0.12 0.92 5.67 -4.04 -0.02 0.90 16 7 N -0.70 -7.16 5.55 -60.73 -0.34 -7.50 16 8 C 0.51 6.74 7.89 -11.58 -0.09 6.65 16 9 O -0.52 -7.87 16.48 5.50 0.09 -7.78 16 10 C 0.50 7.60 7.85 -11.59 -0.09 7.51 16 11 O -0.52 -9.05 16.14 5.50 0.09 -8.97 16 12 N -0.69 -10.32 5.07 -54.18 -0.27 -10.60 16 13 C 0.15 2.56 2.41 -67.87 -0.16 2.40 16 14 C -0.15 -2.91 5.66 -26.60 -0.15 -3.06 16 15 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 16 N -0.59 -14.64 3.00 -172.32 -0.52 -15.16 16 17 C -0.26 -6.94 9.58 -15.06 -0.14 -7.08 16 18 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 19 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -26.13 11.20 55.49 0.62 -25.51 16 21 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 26 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.41 3.78 7.95 -40.82 -0.32 3.46 16 41 H 0.41 5.48 8.07 -40.82 -0.33 5.15 16 42 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 409.77 15.07 6.18 6.18 Total: -1.00 -31.24 409.77 -9.69 -40.92 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -9.36 Total: 3.28 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -1.15 Total: 8.60 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.51 Total: -58.77 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.18 Total: -16.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.24 -9.69 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774526245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.373 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds