Wall clock time and date at job start Fri Apr 10 2020 18:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46657 * 2 1 4 4 C 1.53004 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47118 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47118 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47074 * 180.02562 * 6 5 4 8 8 C 1.34781 * 120.00242 * 180.02562 * 7 6 5 9 9 O 1.21346 * 119.99511 * 359.97438 * 8 7 6 10 10 C 1.49451 * 120.00373 * 180.02562 * 8 7 6 11 11 O 1.21348 * 119.99652 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99841 * 179.97438 * 10 8 7 13 13 C 1.46503 * 119.99376 * 179.97438 * 12 10 8 14 14 C 1.53065 * 109.44591 * 84.79556 * 13 12 10 15 15 C 1.53192 * 109.29648 * 181.23295 * 14 13 12 16 16 N 1.46922 * 108.89269 * 305.57538 * 15 14 13 17 17 C 1.36942 * 120.62796 * 233.51528 * 16 15 14 18 18 H 1.08007 * 119.99636 * 151.83092 * 17 16 15 19 19 C 1.38806 * 120.00203 * 331.83144 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08250 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07925 * 19 17 16 22 22 H 1.48503 * 109.47195 * 89.99708 * 21 19 17 23 23 H 1.48498 * 109.47355 * 210.00264 * 21 19 17 24 24 H 1.48504 * 109.46850 * 330.00278 * 21 19 17 25 25 C 1.46924 * 118.73925 * 53.53382 * 16 15 14 26 26 C 1.53049 * 109.45272 * 204.99544 * 13 12 10 27 27 H 1.09000 * 109.47554 * 59.99833 * 1 2 3 28 28 H 1.09007 * 109.47026 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47310 * 299.99461 * 1 2 3 30 30 H 1.09003 * 109.47310 * 240.00539 * 2 1 3 31 31 H 1.08993 * 109.47415 * 119.99800 * 2 1 3 32 32 H 1.09003 * 109.47254 * 60.00551 * 3 2 1 33 33 H 1.08992 * 109.47470 * 299.99700 * 3 2 1 34 34 H 1.09003 * 109.47227 * 60.00478 * 4 3 2 35 35 H 1.09000 * 109.47454 * 300.00217 * 4 3 2 36 36 H 1.08994 * 109.47264 * 60.00199 * 5 4 3 37 37 H 1.08999 * 109.47506 * 300.00052 * 5 4 3 38 38 H 1.09003 * 109.46756 * 60.00167 * 6 5 4 39 39 H 1.09000 * 109.47454 * 300.00150 * 6 5 4 40 40 H 0.97005 * 120.00355 * 0.02562 * 7 6 5 41 41 H 0.96995 * 120.00047 * 359.97438 * 12 10 8 42 42 H 1.08996 * 109.45813 * 324.96250 * 13 12 10 43 43 H 1.09005 * 109.39523 * 61.35360 * 14 13 12 44 44 H 1.09004 * 109.62174 * 301.25047 * 14 13 12 45 45 H 1.09003 * 109.58615 * 185.71531 * 15 14 13 46 46 H 1.08998 * 109.58372 * 65.43477 * 15 14 13 47 47 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 48 48 H 1.09007 * 109.58325 * 66.18371 * 25 16 15 49 49 H 1.08996 * 109.58499 * 186.46256 * 25 16 15 50 50 H 1.09002 * 109.49883 * 58.67895 * 26 13 12 51 51 H 1.08997 * 109.52642 * 298.59203 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6099 2.8852 -0.0013 7 7 6.0981 4.2664 -0.0001 8 6 7.4232 4.5128 -0.0014 9 8 8.2118 3.5904 -0.0032 10 6 7.9214 5.9218 0.0004 11 8 7.1327 6.8441 0.0027 12 7 9.2464 6.1681 -0.0004 13 6 9.7346 7.5493 0.0008 14 6 9.7822 8.0717 1.4388 15 6 10.2637 9.5260 1.4335 16 7 11.5454 9.6001 0.7190 17 6 12.6397 10.1763 1.3071 18 1 13.6331 9.8547 1.0310 19 6 12.4722 11.1734 2.2581 20 7 11.3182 11.7983 2.3603 21 14 13.8844 11.6285 3.3930 22 1 14.6944 12.7049 2.7682 23 1 13.3425 12.1063 4.6904 24 1 14.7389 10.4358 3.6225 25 6 11.6305 9.0448 -0.6386 26 6 11.1372 7.5948 -0.6101 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9290 -0.8909 35 1 3.9337 0.9287 0.8891 36 1 3.7169 3.3984 0.8904 37 1 3.7161 3.3995 -0.8895 38 1 5.9724 2.3720 -0.8920 39 1 5.9740 2.3707 0.8880 40 1 5.4678 5.0037 0.0017 41 1 9.8767 5.4308 -0.0018 42 1 9.0618 8.1728 -0.5879 43 1 10.4720 7.4622 2.0227 44 1 8.7869 8.0196 1.8803 45 1 10.3965 9.8707 2.4590 46 1 9.5278 10.1527 0.9298 47 1 11.2013 12.4953 3.0245 48 1 11.0054 9.6304 -1.3128 49 1 12.6648 9.0744 -0.9812 50 1 11.1043 7.2016 -1.6262 51 1 11.8164 6.9912 -0.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774526245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:46 Heat of formation + Delta-G solvation = -103.339601 kcal Electronic energy + Delta-G solvation = -27076.044966 eV Core-core repulsion = 23201.857847 eV Total energy + Delta-G solvation = -3874.187119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79816 -40.07423 -38.85250 -37.72073 -36.38303 -35.75935 -33.93343 -33.14611 -31.83038 -31.29453 -29.35474 -27.35862 -25.97649 -24.39517 -23.93682 -23.09271 -22.37499 -21.83556 -21.40949 -20.94028 -19.49893 -18.65111 -18.00627 -17.28147 -16.99989 -16.68750 -16.65051 -16.33471 -15.79069 -15.57355 -15.36229 -15.11760 -14.92566 -14.76231 -14.58878 -14.26679 -14.11398 -13.99019 -13.78950 -13.22003 -13.18156 -13.04457 -12.90650 -12.64940 -12.55990 -12.55043 -12.39644 -12.14623 -12.08290 -11.85319 -11.80298 -11.68949 -11.58269 -11.52783 -11.39894 -11.33163 -10.69317 -10.58583 -10.33903 -10.17383 -8.70664 -7.87606 -5.33373 0.31428 1.29006 1.47899 1.49719 1.59174 2.11440 2.52062 2.60716 3.28761 3.39743 3.66908 3.71908 3.81933 3.97672 4.01593 4.07272 4.20514 4.28300 4.32566 4.44751 4.45162 4.54156 4.64626 4.68799 4.73186 4.81337 4.81588 4.88775 4.91972 4.99008 5.03346 5.04895 5.08491 5.10962 5.17996 5.21104 5.27495 5.30118 5.33739 5.38309 5.45661 5.49030 5.54594 5.64465 5.69897 5.91334 6.34121 6.39153 6.71889 6.92964 7.14106 7.84749 8.36841 9.19545 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.031832 B = 0.001692 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.406037 B =16544.797121 C =16888.271471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.125 4.125 6 C 0.115 3.885 7 N -0.690 5.690 8 C 0.512 3.488 9 O -0.542 6.542 10 C 0.502 3.498 11 O -0.547 6.547 12 N -0.682 5.682 13 C 0.159 3.841 14 C -0.133 4.133 15 C 0.183 3.817 16 N -0.610 5.610 17 C -0.264 4.264 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.284 1.284 23 H -0.295 1.295 24 H -0.269 1.269 25 C 0.143 3.857 26 C -0.125 4.125 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.419 0.581 41 H 0.418 0.582 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.056 0.944 46 H -0.004 1.004 47 H 0.250 0.750 48 H 0.017 0.983 49 H 0.068 0.932 50 H 0.092 0.908 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.257 -23.533 -6.499 29.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.007 4.007 7 N -0.343 5.343 8 C 0.292 3.708 9 O -0.419 6.419 10 C 0.283 3.717 11 O -0.424 6.424 12 N -0.334 5.334 13 C 0.055 3.945 14 C -0.173 4.173 15 C 0.056 3.944 16 N -0.333 5.333 17 C -0.394 4.394 18 H 0.090 0.910 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.194 1.194 25 C 0.017 3.983 26 C -0.164 4.164 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.257 0.743 41 H 0.256 0.744 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.014 0.986 47 H 0.059 0.941 48 H 0.035 0.965 49 H 0.086 0.914 50 H 0.111 0.889 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.290 -23.429 -6.411 29.815 hybrid contribution 0.526 0.850 0.802 1.282 sum -16.764 -22.579 -5.609 28.675 Atomic orbital electron populations 1.21794 0.95843 1.01776 1.01828 1.21543 0.95956 0.96833 1.02088 1.21599 0.94803 0.96949 1.02281 1.21487 0.95739 0.95122 1.02843 1.21785 0.91844 0.98897 1.03783 1.21677 0.95617 0.80611 1.02835 1.45842 1.05797 1.11162 1.71522 1.19989 0.84149 0.88639 0.77993 1.90748 1.55899 1.45825 1.49457 1.20365 0.83800 0.89633 0.77892 1.90765 1.55747 1.46379 1.49546 1.45954 1.06331 1.09993 1.71114 1.20908 0.96220 0.80792 0.96563 1.22350 0.99965 0.98556 0.96432 1.20473 0.85684 0.91021 0.97210 1.44341 1.08462 1.67964 1.12551 1.19554 0.87444 1.13113 1.19280 0.91027 1.25823 0.99253 0.96305 1.03219 1.70189 1.26140 1.25359 1.36563 0.85289 0.79008 0.78112 0.78107 1.21055 1.22142 1.19362 1.21031 0.99541 0.91781 0.85976 1.22176 0.93924 0.98730 1.01588 0.92730 0.92588 0.92806 0.91946 0.92053 0.91945 0.91813 0.91295 0.91473 0.90571 0.90362 0.90859 0.91147 0.74340 0.74443 0.90948 0.92195 0.92872 0.92553 0.98635 0.94135 0.96503 0.91379 0.88908 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.13 -1.03 5.93 30.59 0.18 -0.85 16 3 C -0.12 -0.95 5.21 30.60 0.16 -0.79 16 4 C -0.11 -0.92 5.21 30.59 0.16 -0.76 16 5 C -0.13 -1.14 5.33 30.59 0.16 -0.98 16 6 C 0.11 1.60 5.67 86.38 0.49 2.09 16 7 N -0.69 -12.79 5.55 -464.41 -2.58 -15.36 16 8 C 0.51 12.74 7.89 87.27 0.69 13.42 16 9 O -0.54 -15.30 16.48 -3.24 -0.05 -15.35 16 10 C 0.50 14.48 7.85 87.27 0.69 15.16 16 11 O -0.55 -18.45 16.14 -3.24 -0.05 -18.50 16 12 N -0.68 -19.11 5.07 -443.68 -2.25 -21.36 16 13 C 0.16 5.29 2.41 45.03 0.11 5.40 16 14 C -0.13 -5.23 5.66 30.68 0.17 -5.05 16 15 C 0.18 9.02 5.30 86.36 0.46 9.48 16 16 N -0.61 -30.32 3.00 -699.10 -2.09 -32.41 16 17 C -0.26 -14.36 9.58 84.03 0.81 -13.55 16 18 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 19 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 20 N -0.94 -55.91 11.20 21.65 0.24 -55.67 16 21 Si 0.97 44.74 29.59 68.60 2.03 46.77 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 C 0.14 5.64 6.52 86.36 0.56 6.20 16 26 C -0.12 -3.84 5.55 30.67 0.17 -3.67 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.42 6.93 7.95 -92.70 -0.74 6.20 16 41 H 0.42 10.18 8.07 -92.71 -0.75 9.43 16 42 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 43 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 44 H 0.05 2.08 8.14 -2.38 -0.02 2.07 16 45 H 0.06 3.15 6.06 -2.39 -0.01 3.14 16 46 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 50 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 51 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -67.59 409.77 0.60 -66.99 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.58 Total: 21.73 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 5.94 Total: 23.17 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -6.68 Total: -124.81 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.11 Total: -33.85 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.59 0.60 -66.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774526245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.351 kcal (2) G-P(sol) polarization free energy of solvation -67.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds