Wall clock time and date at job start Fri Apr 10 2020 18:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99688 * 2 1 4 4 O 1.20823 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99618 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.88834 * 303.80969 * 5 3 2 7 7 C 1.54629 * 110.96958 * 67.62716 * 5 3 2 8 8 C 1.51289 * 104.25957 * 142.69458 * 7 5 3 9 9 O 1.21278 * 124.94245 * 164.01412 * 8 7 5 10 10 N 1.34415 * 110.10941 * 344.14401 * 8 7 5 11 11 C 1.46504 * 124.34806 * 179.43608 * 10 8 7 12 12 N 1.46894 * 109.47208 * 269.70150 * 11 10 8 13 13 C 1.46954 * 111.00297 * 154.99679 * 12 11 10 14 14 C 1.53052 * 109.36714 * 183.18879 * 13 12 11 15 15 N 1.46953 * 109.36340 * 301.59691 * 14 13 12 16 16 C 1.46904 * 110.99978 * 183.18887 * 15 14 13 17 17 C 1.50697 * 109.46891 * 170.00438 * 16 15 14 18 18 H 1.07991 * 120.00449 * 359.72239 * 17 16 15 19 19 C 1.37885 * 119.99686 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 16 22 22 H 1.48490 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 120.00108 * 21 19 17 24 24 H 1.48504 * 109.46636 * 239.99667 * 21 19 17 25 25 C 1.46959 * 110.88000 * 59.32443 * 15 14 13 26 26 C 1.46960 * 111.00223 * 278.79884 * 12 11 10 27 27 C 1.46766 * 111.30406 * 359.17012 * 10 8 7 28 28 H 1.09005 * 109.47230 * 299.99767 * 1 2 3 29 29 H 1.08995 * 109.47005 * 59.99927 * 1 2 3 30 30 H 1.09000 * 109.46900 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.48237 * 261.58990 * 7 5 3 32 32 H 1.08995 * 110.48649 * 24.23366 * 7 5 3 33 33 H 1.08997 * 109.47024 * 149.69896 * 11 10 8 34 34 H 1.09004 * 109.46862 * 29.70354 * 11 10 8 35 35 H 1.09004 * 109.48610 * 63.21876 * 13 12 11 36 36 H 1.09003 * 109.50924 * 303.17169 * 13 12 11 37 37 H 1.09005 * 109.48740 * 181.63419 * 14 13 12 38 38 H 1.08995 * 109.50741 * 61.57738 * 14 13 12 39 39 H 1.08998 * 109.47046 * 49.99939 * 16 15 14 40 40 H 1.09001 * 109.47014 * 290.00139 * 16 15 14 41 41 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.49114 * 60.64011 * 25 15 14 43 43 H 1.08991 * 109.49106 * 180.71306 * 25 15 14 44 44 H 1.08999 * 109.48781 * 296.77993 * 26 12 11 45 45 H 1.08996 * 109.48797 * 56.81924 * 26 12 11 46 46 H 1.09002 * 110.24501 * 136.28405 * 27 10 8 47 47 H 1.08994 * 110.24492 * 258.28071 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9837 0.7296 0.8470 7 6 4.1482 0.7548 -1.3343 8 6 5.3246 1.6657 -1.6080 9 8 6.2110 1.4356 -2.4031 10 7 5.2459 2.7658 -0.8397 11 6 6.2313 3.8500 -0.8450 12 7 7.2712 3.5713 0.1544 13 6 8.5291 4.2477 -0.1917 14 6 9.6061 3.8691 0.8277 15 7 9.1588 4.2521 2.1741 16 6 10.1987 3.9735 3.1735 17 6 9.8106 4.5968 4.4895 18 1 8.8863 5.1489 4.5738 19 6 10.6386 4.4675 5.5844 20 7 11.7645 3.7955 5.4816 21 14 10.1612 5.2466 7.2136 22 1 8.8576 5.9423 7.0665 23 1 10.0452 4.1913 8.2518 24 1 11.2018 6.2261 7.6175 25 6 7.9009 3.5757 2.5203 26 6 6.8239 3.9542 1.5009 27 6 4.0427 2.7444 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.4786 -0.2786 -1.2294 32 1 3.4101 0.8412 -2.1316 33 1 5.7374 4.7910 -0.6028 34 1 6.6866 3.9223 -1.8327 35 1 8.3776 5.3270 -0.1769 36 1 8.8464 3.9387 -1.1877 37 1 10.5322 4.3925 0.5896 38 1 9.7773 2.7932 0.7937 39 1 11.1469 4.3935 2.8380 40 1 10.3029 2.8957 3.2986 41 1 12.3468 3.7043 6.2520 42 1 8.0523 2.4963 2.5054 43 1 7.5837 3.8850 3.5161 44 1 6.6530 5.0302 1.5350 45 1 5.8976 3.4313 1.7388 46 1 4.2851 3.0624 1.0145 47 1 3.2744 3.3901 -0.4245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872733564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:05 Heat of formation + Delta-G solvation = -89.822167 kcal Electronic energy + Delta-G solvation = -28244.019852 eV Core-core repulsion = 24234.585798 eV Total energy + Delta-G solvation = -4009.434054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42392 -40.18057 -38.60212 -37.17582 -36.36951 -35.15731 -32.89098 -32.02317 -30.50463 -28.75498 -28.16714 -27.80980 -25.93136 -24.23769 -23.27958 -23.07632 -21.42424 -20.94556 -19.68028 -19.22403 -18.34246 -17.34806 -17.24641 -16.58150 -16.33586 -16.13291 -16.00293 -15.02465 -14.69169 -14.45265 -14.29470 -14.23164 -14.18020 -13.91550 -13.77135 -13.61015 -13.25415 -13.05418 -12.89810 -12.62631 -12.27628 -12.01200 -11.91389 -11.76063 -11.67743 -11.28306 -11.19004 -11.00618 -10.89747 -10.78418 -10.65242 -10.43449 -10.36976 -10.01067 -9.79647 -9.19093 -9.01776 -8.45557 -8.24260 -7.24942 -6.03726 -4.05289 1.65530 2.08740 2.38137 2.81202 3.29590 3.37089 3.41356 3.74935 3.91041 4.08789 4.26648 4.41060 4.45737 4.62736 4.66925 4.74510 4.87964 4.88815 5.07671 5.08576 5.11400 5.21366 5.30871 5.31881 5.37451 5.44902 5.51152 5.69514 5.76851 5.83310 5.86660 6.01554 6.15847 6.23312 6.43462 6.55748 6.64216 6.84785 7.11239 7.17051 7.21077 7.33686 7.36167 7.78755 7.99814 8.07738 8.19136 8.53630 9.02478 9.58986 11.07178 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002721 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.379086 B =10287.856714 C =11570.459340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.477 3.523 4 O -0.499 6.499 5 C -0.098 4.098 6 H 0.133 0.867 7 C -0.140 4.140 8 C 0.528 3.472 9 O -0.520 6.520 10 N -0.607 5.607 11 C 0.293 3.707 12 N -0.554 5.554 13 C 0.068 3.932 14 C 0.057 3.943 15 N -0.538 5.538 16 C 0.193 3.807 17 C -0.507 4.507 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.068 3.932 26 C 0.058 3.942 27 C 0.112 3.888 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.030 0.970 40 H -0.008 1.008 41 H 0.261 0.739 42 H 0.028 0.972 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.489 -5.987 -13.485 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.318 3.682 4 O -0.386 6.386 5 C -0.117 4.117 6 H 0.151 0.849 7 C -0.180 4.180 8 C 0.314 3.686 9 O -0.395 6.395 10 N -0.342 5.342 11 C 0.082 3.918 12 N -0.281 5.281 13 C -0.060 4.060 14 C -0.072 4.072 15 N -0.264 5.264 16 C 0.068 3.932 17 C -0.545 4.545 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.060 4.060 26 C -0.070 4.070 27 C -0.012 4.012 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.009 0.991 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.024 -5.788 -13.814 25.813 hybrid contribution -0.380 0.326 1.171 1.274 sum -21.404 -5.463 -12.643 25.452 Atomic orbital electron populations 1.23335 0.75778 1.04019 1.02772 1.86514 1.23782 1.32861 1.83799 1.23158 0.91147 0.81595 0.72257 1.90699 1.66834 1.36263 1.44841 1.21912 0.88323 0.99518 1.01968 0.84895 1.22315 0.97741 1.01844 0.96137 1.20552 0.86120 0.81779 0.80141 1.90749 1.37587 1.75108 1.36010 1.48347 1.23019 1.21813 1.41042 1.21739 0.86314 0.86572 0.97159 1.61868 1.04031 1.59720 1.02517 1.22098 0.88778 0.96367 0.98718 1.22061 0.96445 0.98540 0.90189 1.62299 1.05184 1.57229 1.01652 1.19705 0.89341 0.94840 0.89278 1.21180 1.06319 1.33165 0.93865 0.91902 1.25003 0.94996 0.95534 0.99141 1.69972 1.11636 1.41503 1.30621 0.86451 0.78537 0.78997 0.83485 1.19689 1.21119 1.21025 1.21968 0.90110 0.96152 0.97817 1.22363 0.98031 0.98529 0.88095 1.22100 0.87477 0.94228 0.97346 0.91617 0.91726 0.87816 0.86451 0.87580 0.92157 0.88710 0.93947 0.90817 0.90815 0.95059 0.95202 0.99053 0.92967 0.95390 0.89545 0.94051 0.91466 0.89014 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.60 10.57 -39.27 -0.41 -3.01 16 3 C 0.48 3.93 7.19 36.00 0.26 4.19 16 4 O -0.50 -5.31 15.25 -18.75 -0.29 -5.59 16 5 C -0.10 -0.72 3.66 -90.14 -0.33 -1.05 16 6 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 7 C -0.14 -1.11 6.41 -26.74 -0.17 -1.28 16 8 C 0.53 6.39 8.02 -10.86 -0.09 6.30 16 9 O -0.52 -8.45 17.59 5.56 0.10 -8.35 16 10 N -0.61 -6.66 3.13 -175.90 -0.55 -7.21 16 11 C 0.29 3.46 5.76 -63.32 -0.36 3.10 16 12 N -0.55 -8.04 4.81 -238.37 -1.15 -9.18 16 13 C 0.07 1.03 5.53 -3.77 -0.02 1.00 16 14 C 0.06 1.04 5.61 -3.77 -0.02 1.02 16 15 N -0.54 -11.58 4.70 -235.91 -1.11 -12.69 16 16 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 17 C -0.51 -14.11 8.47 -34.44 -0.29 -14.40 16 18 H 0.06 1.73 7.14 -52.49 -0.37 1.35 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 21 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C 0.07 1.31 5.43 -3.76 -0.02 1.29 16 26 C 0.06 0.86 5.47 -3.76 -0.02 0.84 16 27 C 0.11 0.96 6.52 -3.12 -0.02 0.94 16 28 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.11 0.72 7.89 -51.93 -0.41 0.31 16 33 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 34 H 0.09 1.14 7.53 -51.93 -0.39 0.75 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 37 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 40 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.76 6.80 -51.93 -0.35 1.41 16 44 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 45 H 0.07 0.86 5.76 -51.93 -0.30 0.56 16 46 H 0.09 0.76 6.03 -51.93 -0.31 0.45 16 47 H 0.09 0.78 6.96 -51.93 -0.36 0.42 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -34.37 378.74 -9.65 -44.03 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -7.52 Total: -3.85 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -0.14 Total: 9.66 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -2.07 Total: -55.03 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.60 Total: -16.96 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.37 -9.65 -44.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872733564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.797 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds