Wall clock time and date at job start Fri Apr 10 2020 18:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99688 * 2 1 4 4 O 1.20823 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99618 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.88834 * 303.80969 * 5 3 2 7 7 C 1.54629 * 110.96958 * 67.62716 * 5 3 2 8 8 C 1.51289 * 104.25957 * 142.69458 * 7 5 3 9 9 O 1.21278 * 124.94245 * 164.01412 * 8 7 5 10 10 N 1.34415 * 110.10941 * 344.14401 * 8 7 5 11 11 C 1.46504 * 124.34806 * 179.43608 * 10 8 7 12 12 N 1.46894 * 109.47208 * 269.70150 * 11 10 8 13 13 C 1.46954 * 111.00297 * 154.99679 * 12 11 10 14 14 C 1.53052 * 109.36714 * 183.18879 * 13 12 11 15 15 N 1.46953 * 109.36340 * 301.59691 * 14 13 12 16 16 C 1.46904 * 110.99978 * 183.18887 * 15 14 13 17 17 C 1.50697 * 109.46891 * 170.00438 * 16 15 14 18 18 H 1.07991 * 120.00449 * 359.72239 * 17 16 15 19 19 C 1.37885 * 119.99686 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 16 22 22 H 1.48490 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 120.00108 * 21 19 17 24 24 H 1.48504 * 109.46636 * 239.99667 * 21 19 17 25 25 C 1.46959 * 110.88000 * 59.32443 * 15 14 13 26 26 C 1.46960 * 111.00223 * 278.79884 * 12 11 10 27 27 C 1.46766 * 111.30406 * 359.17012 * 10 8 7 28 28 H 1.09005 * 109.47230 * 299.99767 * 1 2 3 29 29 H 1.08995 * 109.47005 * 59.99927 * 1 2 3 30 30 H 1.09000 * 109.46900 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.48237 * 261.58990 * 7 5 3 32 32 H 1.08995 * 110.48649 * 24.23366 * 7 5 3 33 33 H 1.08997 * 109.47024 * 149.69896 * 11 10 8 34 34 H 1.09004 * 109.46862 * 29.70354 * 11 10 8 35 35 H 1.09004 * 109.48610 * 63.21876 * 13 12 11 36 36 H 1.09003 * 109.50924 * 303.17169 * 13 12 11 37 37 H 1.09005 * 109.48740 * 181.63419 * 14 13 12 38 38 H 1.08995 * 109.50741 * 61.57738 * 14 13 12 39 39 H 1.08998 * 109.47046 * 49.99939 * 16 15 14 40 40 H 1.09001 * 109.47014 * 290.00139 * 16 15 14 41 41 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.49114 * 60.64011 * 25 15 14 43 43 H 1.08991 * 109.49106 * 180.71306 * 25 15 14 44 44 H 1.08999 * 109.48781 * 296.77993 * 26 12 11 45 45 H 1.08996 * 109.48797 * 56.81924 * 26 12 11 46 46 H 1.09002 * 110.24501 * 136.28405 * 27 10 8 47 47 H 1.08994 * 110.24492 * 258.28071 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9837 0.7296 0.8470 7 6 4.1482 0.7548 -1.3343 8 6 5.3246 1.6657 -1.6080 9 8 6.2110 1.4356 -2.4031 10 7 5.2459 2.7658 -0.8397 11 6 6.2313 3.8500 -0.8450 12 7 7.2712 3.5713 0.1544 13 6 8.5291 4.2477 -0.1917 14 6 9.6061 3.8691 0.8277 15 7 9.1588 4.2521 2.1741 16 6 10.1987 3.9735 3.1735 17 6 9.8106 4.5968 4.4895 18 1 8.8863 5.1489 4.5738 19 6 10.6386 4.4675 5.5844 20 7 11.7645 3.7955 5.4816 21 14 10.1612 5.2466 7.2136 22 1 8.8576 5.9423 7.0665 23 1 10.0452 4.1913 8.2518 24 1 11.2018 6.2261 7.6175 25 6 7.9009 3.5757 2.5203 26 6 6.8239 3.9542 1.5009 27 6 4.0427 2.7444 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.4786 -0.2786 -1.2294 32 1 3.4101 0.8412 -2.1316 33 1 5.7374 4.7910 -0.6028 34 1 6.6866 3.9223 -1.8327 35 1 8.3776 5.3270 -0.1769 36 1 8.8464 3.9387 -1.1877 37 1 10.5322 4.3925 0.5896 38 1 9.7773 2.7932 0.7937 39 1 11.1469 4.3935 2.8380 40 1 10.3029 2.8957 3.2986 41 1 12.3468 3.7043 6.2520 42 1 8.0523 2.4963 2.5054 43 1 7.5837 3.8850 3.5161 44 1 6.6530 5.0302 1.5350 45 1 5.8976 3.4313 1.7388 46 1 4.2851 3.0624 1.0145 47 1 3.2744 3.3901 -0.4245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872733564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:04 Heat of formation + Delta-G solvation = -115.044797 kcal Electronic energy + Delta-G solvation = -28245.113587 eV Core-core repulsion = 24234.585798 eV Total energy + Delta-G solvation = -4010.527789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.13380 -40.98780 -39.95923 -37.89355 -37.30822 -36.53583 -34.66766 -33.23967 -31.89486 -30.04404 -29.07093 -28.53510 -27.40576 -25.44314 -24.47660 -24.21415 -23.21794 -21.58776 -20.67184 -20.55774 -18.97780 -18.50344 -18.05888 -17.97046 -17.42293 -17.16401 -16.85733 -16.53114 -15.93338 -15.86809 -15.67668 -15.46668 -15.15465 -14.96161 -14.91750 -14.53416 -14.29115 -14.04436 -13.93639 -13.78760 -13.39408 -13.31937 -13.06099 -12.90719 -12.71637 -12.61232 -12.44771 -12.35271 -12.27601 -12.12841 -11.90851 -11.79852 -11.67714 -11.56276 -11.20092 -10.96284 -10.63138 -9.96331 -9.38817 -9.05641 -8.21057 -6.31711 1.03492 1.41428 1.42199 1.44992 1.54350 1.55799 1.99903 2.40103 2.95202 3.10404 3.11363 3.24042 3.28286 3.70431 3.79921 3.89044 3.99899 4.07344 4.16935 4.27285 4.33597 4.34042 4.37909 4.39120 4.45807 4.49914 4.55272 4.69389 4.73068 4.77942 4.82763 4.84860 4.95977 4.99300 5.04088 5.20550 5.25870 5.31699 5.38491 5.63244 5.86196 5.98902 6.03697 6.16657 6.32320 6.59448 6.61987 6.84578 7.08952 7.38280 8.90621 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002721 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.379086 B =10287.856714 C =11570.459340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.483 3.517 4 O -0.526 6.526 5 C -0.089 4.089 6 H 0.149 0.851 7 C -0.129 4.129 8 C 0.519 3.481 9 O -0.569 6.569 10 N -0.606 5.606 11 C 0.293 3.707 12 N -0.568 5.568 13 C 0.080 3.920 14 C 0.056 3.944 15 N -0.541 5.541 16 C 0.208 3.792 17 C -0.520 4.520 18 H 0.066 0.934 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.972 3.028 22 H -0.260 1.260 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.069 3.931 26 C 0.072 3.928 27 C 0.112 3.888 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.013 0.987 39 H 0.003 0.997 40 H -0.043 1.043 41 H 0.264 0.736 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.145 -5.615 -13.310 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.326 3.674 4 O -0.415 6.415 5 C -0.108 4.108 6 H 0.167 0.833 7 C -0.169 4.169 8 C 0.307 3.693 9 O -0.448 6.448 10 N -0.340 5.340 11 C 0.083 3.917 12 N -0.296 5.296 13 C -0.048 4.048 14 C -0.073 4.073 15 N -0.266 5.266 16 C 0.082 3.918 17 C -0.558 4.558 18 H 0.084 0.916 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.184 1.184 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.059 4.059 26 C -0.056 4.056 27 C -0.011 4.011 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.032 0.968 39 H 0.021 0.979 40 H -0.026 1.026 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.731 -5.419 -13.646 27.906 hybrid contribution 0.422 0.156 1.068 1.159 sum -23.309 -5.264 -12.578 27.004 Atomic orbital electron populations 1.23590 0.74447 1.05790 1.02737 1.86508 1.25113 1.32243 1.83357 1.23195 0.91257 0.81463 0.71447 1.90696 1.67425 1.37122 1.46217 1.21880 0.87922 0.98811 1.02217 0.83305 1.22278 0.96256 1.01521 0.96841 1.21227 0.86438 0.82321 0.79302 1.90721 1.39717 1.76233 1.38081 1.48449 1.23263 1.21331 1.40992 1.21771 0.86027 0.87789 0.96125 1.61816 1.04647 1.60184 1.02915 1.21956 0.88014 0.96961 0.97904 1.22140 0.98164 0.97443 0.89576 1.62247 1.04822 1.57636 1.01910 1.19355 0.89775 0.92208 0.90463 1.21463 1.06470 1.33209 0.94706 0.91597 1.25972 0.94779 0.95895 1.03244 1.70109 1.12850 1.42774 1.31964 0.85288 0.78651 0.78087 0.78313 1.18372 1.20454 1.20530 1.21975 0.90251 0.94808 0.98876 1.22215 0.97037 0.99178 0.87133 1.22196 0.86489 0.95239 0.97163 0.91795 0.91668 0.85228 0.85080 0.86185 0.89769 0.88998 0.92907 0.89210 0.90903 0.96820 0.97923 1.02554 0.92698 0.97191 0.90997 0.93405 0.88801 0.88329 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 113.37 1.20 1.41 16 2 O -0.36 -4.37 10.57 -51.48 -0.54 -4.91 16 3 C 0.48 6.82 7.19 71.23 0.51 7.33 16 4 O -0.53 -10.13 15.25 21.97 0.34 -9.80 16 5 C -0.09 -1.07 3.66 -10.48 -0.04 -1.11 16 6 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 7 C -0.13 -1.74 6.41 30.59 0.20 -1.55 16 8 C 0.52 11.80 8.02 87.90 0.71 12.50 16 9 O -0.57 -18.27 17.59 -3.02 -0.05 -18.32 16 10 N -0.61 -12.00 3.13 -829.03 -2.60 -14.60 16 11 C 0.29 6.26 5.76 170.81 0.98 7.25 16 12 N -0.57 -15.54 4.81 -908.07 -4.37 -19.91 16 13 C 0.08 2.30 5.53 86.31 0.48 2.78 16 14 C 0.06 2.09 5.61 86.31 0.48 2.57 16 15 N -0.54 -23.80 4.70 -900.28 -4.23 -28.03 16 16 C 0.21 11.38 4.72 85.56 0.40 11.79 16 17 C -0.52 -29.53 8.47 25.60 0.22 -29.31 16 18 H 0.07 3.63 7.14 -2.92 -0.02 3.61 16 19 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 20 N -0.94 -56.98 13.29 21.45 0.28 -56.69 16 21 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 C 0.07 2.68 5.43 86.31 0.47 3.15 16 26 C 0.07 2.01 5.47 86.31 0.47 2.48 16 27 C 0.11 1.61 6.52 86.83 0.57 2.18 16 28 H 0.06 0.53 8.13 -2.38 -0.02 0.51 16 29 H 0.06 0.51 8.13 -2.39 -0.02 0.49 16 30 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.13 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.12 1.32 7.89 -2.39 -0.02 1.30 16 33 H 0.08 1.44 7.90 -2.39 -0.02 1.42 16 34 H 0.09 2.05 7.53 -2.38 -0.02 2.04 16 35 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.09 2.33 7.98 -2.39 -0.02 2.31 16 37 H 0.07 2.70 8.07 -2.38 -0.02 2.68 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.00 0.16 8.03 -2.39 -0.02 0.14 16 40 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 41 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 2.95 6.80 -2.39 -0.02 2.94 16 44 H 0.05 1.30 8.12 -2.39 -0.02 1.29 16 45 H 0.09 2.13 5.76 -2.39 -0.01 2.12 16 46 H 0.10 1.32 6.03 -2.39 -0.01 1.30 16 47 H 0.10 1.37 6.96 -2.39 -0.02 1.36 16 Total: -1.00 -76.44 378.74 -1.08 -77.52 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.96 Total: 6.78 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 7.11 Total: 21.87 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -10.91 Total: -119.23 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.26 Total: -33.03 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -76.44 -1.08 -77.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872733564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.526 kcal (2) G-P(sol) polarization free energy of solvation -76.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds