Wall clock time and date at job start Fri Apr 10 2020 18:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41604 * 113.99930 * 2 1 4 4 C 1.34774 * 120.00256 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00270 * 180.02562 * 4 3 2 7 7 C 1.53039 * 109.45980 * 180.02562 * 6 4 3 8 8 C 1.53189 * 109.30898 * 181.38486 * 7 6 4 9 9 N 1.46927 * 108.77794 * 305.36506 * 8 7 6 10 10 C 1.34779 * 120.62966 * 233.59017 * 9 8 7 11 11 O 1.21587 * 119.99753 * 354.92960 * 10 9 8 12 12 N 1.34772 * 119.99718 * 174.93365 * 10 9 8 13 13 C 1.46505 * 119.99855 * 185.02528 * 12 10 9 14 14 C 1.52997 * 109.47084 * 185.00915 * 13 12 10 15 15 C 1.50703 * 115.54846 * 275.57191 * 14 13 12 16 16 H 1.08001 * 120.00046 * 114.79809 * 15 14 13 17 17 C 1.37880 * 119.99936 * 294.79176 * 15 14 13 18 18 N 1.31514 * 120.00012 * 352.06984 * 17 15 14 19 19 Si 1.86794 * 119.99842 * 172.06663 * 17 15 14 20 20 H 1.48495 * 109.47222 * 90.00347 * 19 17 15 21 21 H 1.48504 * 109.47315 * 210.00714 * 19 17 15 22 22 H 1.48500 * 109.47184 * 330.00119 * 19 17 15 23 23 C 1.53003 * 117.49998 * 129.86847 * 14 13 12 24 24 C 1.52994 * 117.50220 * 61.24592 * 14 13 12 25 25 C 1.46926 * 118.73969 * 53.85908 * 9 8 7 26 26 C 1.53040 * 109.45680 * 300.06691 * 6 4 3 27 27 H 1.09002 * 109.47202 * 60.00068 * 1 2 3 28 28 H 1.09007 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47561 * 299.99944 * 1 2 3 30 30 H 0.97000 * 119.99618 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46128 * 60.02513 * 6 4 3 32 32 H 1.08992 * 109.50005 * 61.43269 * 7 6 4 33 33 H 1.09001 * 109.52062 * 301.35076 * 7 6 4 34 34 H 1.09006 * 109.58452 * 185.57652 * 8 7 6 35 35 H 1.08999 * 109.70555 * 65.22423 * 8 7 6 36 36 H 0.96992 * 120.00513 * 5.02821 * 12 10 9 37 37 H 1.09005 * 109.47002 * 305.01105 * 13 12 10 38 38 H 1.08994 * 109.47403 * 65.00747 * 13 12 10 39 39 H 0.97003 * 119.99721 * 185.00083 * 18 17 15 40 40 H 1.08998 * 117.49892 * 359.97438 * 23 14 13 41 41 H 1.08999 * 117.50286 * 145.01905 * 23 14 13 42 42 H 1.09003 * 117.50192 * 214.98195 * 24 14 13 43 43 H 1.09004 * 117.49779 * 359.97169 * 24 14 13 44 44 H 1.09002 * 109.58439 * 65.93114 * 25 9 8 45 45 H 1.08997 * 109.58303 * 186.35610 * 25 9 8 46 46 H 1.08999 * 109.49807 * 298.56707 * 26 6 4 47 47 H 1.09000 * 109.49727 * 58.63392 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 3.3452 1.4346 -0.0005 5 8 4.0582 0.4535 -0.0005 6 6 3.9582 2.8113 0.0001 7 6 5.4838 2.6902 -0.0014 8 6 6.1032 4.0909 0.0342 9 7 5.5592 4.8770 -1.0815 10 6 6.3823 5.4897 -1.9554 11 8 7.5843 5.4724 -1.7730 12 7 5.8730 6.1217 -3.0312 13 6 6.7707 6.6926 -4.0385 14 6 5.9494 7.4550 -5.0801 15 6 5.3786 6.6191 -6.1966 16 1 4.3089 6.5087 -6.2960 17 6 6.2221 5.9954 -7.0914 18 7 7.5116 6.2527 -7.0684 19 14 5.5332 4.7850 -8.3362 20 1 5.1583 5.5101 -9.5766 21 1 6.5615 3.7614 -8.6528 22 1 4.3323 4.1210 -7.7687 23 6 6.3862 8.8820 -5.4177 24 6 5.1197 8.6445 -4.5929 25 6 4.1009 4.9874 -1.2231 26 6 3.5045 3.5719 -1.2481 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.4347 2.0783 0.0004 31 1 3.6372 3.3514 0.8908 32 1 5.8068 2.1724 -0.9044 33 1 5.8053 2.1278 0.8753 34 1 7.1859 4.0142 -0.0664 35 1 5.8575 4.5775 0.9780 36 1 4.9121 6.1987 -3.1387 37 1 7.4703 7.3755 -3.5564 38 1 7.3242 5.8912 -4.5279 39 1 8.0945 5.8706 -7.7431 40 1 7.2584 9.2777 -4.8973 41 1 6.2609 9.2165 -6.4475 42 1 4.1610 8.8227 -5.0801 43 1 5.1585 8.8836 -3.5301 44 1 3.6931 5.5444 -0.3796 45 1 3.8622 5.5025 -2.1536 46 1 3.8465 3.0455 -2.1392 47 1 2.4165 3.6369 -1.2590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872993917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:07 Heat of formation + Delta-G solvation = -29.884676 kcal Electronic energy + Delta-G solvation = -28321.779677 eV Core-core repulsion = 24314.944708 eV Total energy + Delta-G solvation = -4006.834969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53156 -39.52073 -37.74662 -37.08504 -36.42802 -33.57543 -33.21990 -32.07949 -31.94364 -30.95430 -27.28648 -26.59464 -25.66229 -24.76009 -23.31838 -22.04785 -21.24369 -20.48193 -19.40777 -19.17698 -18.57083 -17.90241 -17.25539 -16.19847 -15.98016 -15.71447 -15.28185 -15.08239 -14.83795 -14.65609 -14.45261 -14.23200 -14.10518 -13.67723 -13.54511 -13.32706 -13.03391 -12.65582 -12.58079 -12.41008 -11.95326 -11.70335 -11.62029 -11.51688 -11.42042 -11.01637 -10.94815 -10.92790 -10.82002 -10.53582 -10.31214 -10.07153 -9.71420 -9.44311 -9.23829 -9.06431 -8.60925 -8.58563 -8.22451 -7.96879 -6.08797 -4.15694 1.57551 2.37537 3.00580 3.25599 3.34678 3.35299 3.70683 4.12555 4.25826 4.30942 4.35316 4.40769 4.55656 4.69549 4.72956 4.86491 4.97500 5.05299 5.12044 5.13763 5.25700 5.32550 5.38112 5.50502 5.58010 5.71216 5.87388 5.94525 6.00556 6.18912 6.30134 6.42754 6.46631 6.60223 6.64798 6.68499 6.89171 6.93590 7.03904 7.30312 7.32348 7.49827 7.53413 7.83410 7.98530 8.33626 8.54878 8.83592 9.15842 9.49367 10.98876 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.003218 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.076139 B = 8698.746108 C = 9833.333144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.150 6.150 3 N -0.602 5.602 4 C 0.529 3.471 5 O -0.517 6.517 6 C -0.090 4.090 7 C -0.115 4.115 8 C 0.133 3.867 9 N -0.637 5.637 10 C 0.702 3.298 11 O -0.596 6.596 12 N -0.726 5.726 13 C 0.179 3.821 14 C 0.036 3.964 15 C -0.501 4.501 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.873 5.873 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.164 4.164 24 C -0.209 4.209 25 C 0.115 3.885 26 C -0.130 4.130 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.055 0.945 30 H 0.406 0.594 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.392 0.608 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.263 0.737 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.910 -4.891 16.037 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.153 6.153 3 N -0.306 5.306 4 C 0.316 3.684 5 O -0.390 6.390 6 C -0.112 4.112 7 C -0.154 4.154 8 C 0.009 3.991 9 N -0.377 5.377 10 C 0.404 3.596 11 O -0.475 6.475 12 N -0.380 5.380 13 C 0.056 3.944 14 C 0.035 3.965 15 C -0.539 4.539 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.508 5.508 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.203 4.203 24 C -0.246 4.246 25 C -0.009 4.009 26 C -0.169 4.169 27 H 0.075 0.925 28 H 0.128 0.872 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.228 0.772 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.155 -5.917 16.058 21.585 hybrid contribution -1.655 -0.251 -0.884 1.894 sum -14.810 -6.168 15.173 22.082 Atomic orbital electron populations 1.23289 0.80577 1.04624 1.01256 1.90600 1.20052 1.07304 1.97312 1.47798 1.05768 0.98421 1.78658 1.20973 0.79472 0.92205 0.75761 1.90743 1.60102 1.40242 1.47882 1.21315 0.97766 0.91079 1.01003 1.21828 0.91360 0.97648 1.04590 1.21386 1.00534 0.89099 0.88067 1.47279 1.05215 1.54905 1.30276 1.15953 0.84955 0.78833 0.79905 1.90874 1.13209 1.66522 1.76921 1.45482 1.10551 1.59506 1.22502 1.20907 0.90417 0.97322 0.85712 1.19071 0.96344 0.86275 0.94811 1.20402 0.92505 1.29696 1.11266 0.92192 1.24977 0.94745 0.96139 0.97220 1.69961 1.03378 1.43486 1.34005 0.86635 0.78864 0.81344 0.81438 1.20688 1.21083 1.19849 1.22708 0.95361 1.03272 0.98939 1.22876 0.95658 1.08567 0.97504 1.21638 0.80829 0.95711 1.02701 1.22093 1.00543 0.96649 0.97625 0.92483 0.87173 0.92661 0.75383 0.87774 0.90260 0.89805 0.88314 0.91939 0.77219 0.94239 0.90437 0.92721 0.91609 0.89995 0.90468 0.91494 0.91203 0.89352 0.89971 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 11.30 101.05 1.14 1.14 16 2 O -0.15 -1.57 11.47 -29.66 -0.34 -1.91 16 3 N -0.60 -5.33 6.28 31.22 0.20 -5.14 16 4 C 0.53 6.04 7.30 -10.98 -0.08 5.96 16 5 O -0.52 -8.47 16.38 -12.63 -0.21 -8.68 16 6 C -0.09 -0.78 2.49 -91.73 -0.23 -1.01 16 7 C -0.12 -1.27 4.65 -26.61 -0.12 -1.39 16 8 C 0.13 1.58 6.42 -3.71 -0.02 1.56 16 9 N -0.64 -8.80 2.97 -178.23 -0.53 -9.33 16 10 C 0.70 13.32 8.29 -86.92 -0.72 12.60 16 11 O -0.60 -13.75 15.76 5.29 0.08 -13.66 16 12 N -0.73 -13.91 5.37 -65.22 -0.35 -14.27 16 13 C 0.18 4.15 5.53 -4.04 -0.02 4.13 16 14 C 0.04 0.83 1.32 -155.66 -0.21 0.63 16 15 C -0.50 -12.82 8.82 -34.44 -0.30 -13.12 16 16 H 0.06 1.51 7.83 -52.49 -0.41 1.09 16 17 C 0.07 1.95 5.22 -17.82 -0.09 1.85 16 18 N -0.87 -24.26 12.60 55.43 0.70 -23.56 16 19 Si 0.89 20.59 29.55 -169.99 -5.02 15.57 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.16 -3.66 9.88 -26.73 -0.26 -3.93 16 24 C -0.21 -4.15 9.78 -26.74 -0.26 -4.41 16 25 C 0.12 1.12 6.46 -3.48 -0.02 1.10 16 26 C -0.13 -1.10 5.28 -26.39 -0.14 -1.24 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.41 1.94 7.94 -40.82 -0.32 1.61 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.09 8.13 -51.93 -0.42 0.66 16 33 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.10 1.41 7.04 -51.93 -0.37 1.04 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.39 6.59 5.87 -40.82 -0.24 6.35 16 37 H 0.04 0.94 7.87 -51.93 -0.41 0.53 16 38 H 0.08 2.08 7.26 -51.93 -0.38 1.71 16 39 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 40 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 41 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.90 5.56 -51.93 -0.29 0.62 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 0.40 7.52 -51.93 -0.39 0.01 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -35.43 385.31 -8.44 -43.86 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.43 Total: 7.44 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.35 Total: 3.87 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.02 Total: -52.29 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.46 Total: -24.25 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.43 -8.44 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872993917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.980 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds