Wall clock time and date at job start Fri Apr 10 2020 18:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41604 * 113.99930 * 2 1 4 4 C 1.34774 * 120.00256 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00270 * 180.02562 * 4 3 2 7 7 C 1.53039 * 109.45980 * 180.02562 * 6 4 3 8 8 C 1.53189 * 109.30898 * 181.38486 * 7 6 4 9 9 N 1.46927 * 108.77794 * 305.36506 * 8 7 6 10 10 C 1.34779 * 120.62966 * 233.59017 * 9 8 7 11 11 O 1.21587 * 119.99753 * 354.92960 * 10 9 8 12 12 N 1.34772 * 119.99718 * 174.93365 * 10 9 8 13 13 C 1.46505 * 119.99855 * 185.02528 * 12 10 9 14 14 C 1.52997 * 109.47084 * 185.00915 * 13 12 10 15 15 C 1.50703 * 115.54846 * 275.57191 * 14 13 12 16 16 H 1.08001 * 120.00046 * 114.79809 * 15 14 13 17 17 C 1.37880 * 119.99936 * 294.79176 * 15 14 13 18 18 N 1.31514 * 120.00012 * 352.06984 * 17 15 14 19 19 Si 1.86794 * 119.99842 * 172.06663 * 17 15 14 20 20 H 1.48495 * 109.47222 * 90.00347 * 19 17 15 21 21 H 1.48504 * 109.47315 * 210.00714 * 19 17 15 22 22 H 1.48500 * 109.47184 * 330.00119 * 19 17 15 23 23 C 1.53003 * 117.49998 * 129.86847 * 14 13 12 24 24 C 1.52994 * 117.50220 * 61.24592 * 14 13 12 25 25 C 1.46926 * 118.73969 * 53.85908 * 9 8 7 26 26 C 1.53040 * 109.45680 * 300.06691 * 6 4 3 27 27 H 1.09002 * 109.47202 * 60.00068 * 1 2 3 28 28 H 1.09007 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47561 * 299.99944 * 1 2 3 30 30 H 0.97000 * 119.99618 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46128 * 60.02513 * 6 4 3 32 32 H 1.08992 * 109.50005 * 61.43269 * 7 6 4 33 33 H 1.09001 * 109.52062 * 301.35076 * 7 6 4 34 34 H 1.09006 * 109.58452 * 185.57652 * 8 7 6 35 35 H 1.08999 * 109.70555 * 65.22423 * 8 7 6 36 36 H 0.96992 * 120.00513 * 5.02821 * 12 10 9 37 37 H 1.09005 * 109.47002 * 305.01105 * 13 12 10 38 38 H 1.08994 * 109.47403 * 65.00747 * 13 12 10 39 39 H 0.97003 * 119.99721 * 185.00083 * 18 17 15 40 40 H 1.08998 * 117.49892 * 359.97438 * 23 14 13 41 41 H 1.08999 * 117.50286 * 145.01905 * 23 14 13 42 42 H 1.09003 * 117.50192 * 214.98195 * 24 14 13 43 43 H 1.09004 * 117.49779 * 359.97169 * 24 14 13 44 44 H 1.09002 * 109.58439 * 65.93114 * 25 9 8 45 45 H 1.08997 * 109.58303 * 186.35610 * 25 9 8 46 46 H 1.08999 * 109.49807 * 298.56707 * 26 6 4 47 47 H 1.09000 * 109.49727 * 58.63392 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 3.3452 1.4346 -0.0005 5 8 4.0582 0.4535 -0.0005 6 6 3.9582 2.8113 0.0001 7 6 5.4838 2.6902 -0.0014 8 6 6.1032 4.0909 0.0342 9 7 5.5592 4.8770 -1.0815 10 6 6.3823 5.4897 -1.9554 11 8 7.5843 5.4724 -1.7730 12 7 5.8730 6.1217 -3.0312 13 6 6.7707 6.6926 -4.0385 14 6 5.9494 7.4550 -5.0801 15 6 5.3786 6.6191 -6.1966 16 1 4.3089 6.5087 -6.2960 17 6 6.2221 5.9954 -7.0914 18 7 7.5116 6.2527 -7.0684 19 14 5.5332 4.7850 -8.3362 20 1 5.1583 5.5101 -9.5766 21 1 6.5615 3.7614 -8.6528 22 1 4.3323 4.1210 -7.7687 23 6 6.3862 8.8820 -5.4177 24 6 5.1197 8.6445 -4.5929 25 6 4.1009 4.9874 -1.2231 26 6 3.5045 3.5719 -1.2481 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.4347 2.0783 0.0004 31 1 3.6372 3.3514 0.8908 32 1 5.8068 2.1724 -0.9044 33 1 5.8053 2.1278 0.8753 34 1 7.1859 4.0142 -0.0664 35 1 5.8575 4.5775 0.9780 36 1 4.9121 6.1987 -3.1387 37 1 7.4703 7.3755 -3.5564 38 1 7.3242 5.8912 -4.5279 39 1 8.0945 5.8706 -7.7431 40 1 7.2584 9.2777 -4.8973 41 1 6.2609 9.2165 -6.4475 42 1 4.1610 8.8227 -5.0801 43 1 5.1585 8.8836 -3.5301 44 1 3.6931 5.5444 -0.3796 45 1 3.8622 5.5025 -2.1536 46 1 3.8465 3.0455 -2.1392 47 1 2.4165 3.6369 -1.2590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872993917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:06 Heat of formation + Delta-G solvation = -54.971286 kcal Electronic energy + Delta-G solvation = -28322.867514 eV Core-core repulsion = 24314.944708 eV Total energy + Delta-G solvation = -4007.922806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59054 -40.67687 -38.83048 -38.30680 -37.72970 -35.09570 -34.24859 -34.02642 -32.88589 -31.84671 -28.38495 -27.68849 -27.18766 -26.12242 -24.19491 -23.17805 -22.81227 -21.44668 -21.17941 -20.39224 -19.51155 -18.96953 -18.16493 -17.88271 -17.10946 -16.78372 -16.64418 -16.39460 -15.96132 -15.81151 -15.51838 -15.36100 -15.13122 -14.94815 -14.89334 -14.46439 -14.16352 -14.04323 -13.52906 -13.37375 -13.32855 -13.07745 -12.92446 -12.85265 -12.78361 -12.37340 -12.27126 -12.18681 -12.01735 -11.81647 -11.66071 -11.43234 -11.14624 -10.96462 -10.93789 -10.49327 -10.06780 -10.01254 -9.97082 -9.36047 -8.10123 -6.20896 0.91579 1.40672 1.44844 1.51827 1.53474 1.74815 2.26054 2.41930 3.05787 3.18308 3.34713 3.58182 3.62710 3.72790 3.81973 4.05851 4.21687 4.25647 4.34667 4.38328 4.41312 4.42829 4.58483 4.60734 4.69275 4.74138 4.75173 4.81051 4.82139 4.87206 4.94254 5.00199 5.11126 5.13091 5.28417 5.31825 5.59663 5.61501 5.66368 5.74005 5.76016 5.84310 6.04979 6.29797 6.38197 6.84725 7.15489 7.25348 7.46845 7.69271 8.97425 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.003218 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.076139 B = 8698.746108 C = 9833.333144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.189 6.189 3 N -0.585 5.585 4 C 0.526 3.474 5 O -0.579 6.579 6 C -0.078 4.078 7 C -0.110 4.110 8 C 0.134 3.866 9 N -0.629 5.629 10 C 0.695 3.305 11 O -0.647 6.647 12 N -0.719 5.719 13 C 0.199 3.801 14 C 0.010 3.990 15 C -0.504 4.504 16 H 0.065 0.935 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.946 3.054 20 H -0.274 1.274 21 H -0.295 1.295 22 H -0.263 1.263 23 C -0.178 4.178 24 C -0.167 4.167 25 C 0.109 3.891 26 C -0.124 4.124 27 H 0.069 0.931 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.427 0.573 31 H 0.152 0.848 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.406 0.594 37 H 0.026 0.974 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 -3.991 17.853 26.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.193 6.193 3 N -0.290 5.290 4 C 0.314 3.686 5 O -0.457 6.457 6 C -0.099 4.099 7 C -0.149 4.149 8 C 0.011 3.989 9 N -0.367 5.367 10 C 0.396 3.604 11 O -0.529 6.529 12 N -0.375 5.375 13 C 0.074 3.926 14 C 0.009 3.991 15 C -0.541 4.541 16 H 0.084 0.916 17 C -0.177 4.177 18 N -0.545 5.545 19 Si 0.772 3.228 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.188 1.188 23 C -0.216 4.216 24 C -0.204 4.204 25 C -0.013 4.013 26 C -0.163 4.163 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.093 0.907 30 H 0.272 0.728 31 H 0.170 0.830 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.244 0.756 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.133 0.867 45 H 0.103 0.897 46 H 0.067 0.933 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.413 -4.998 17.900 25.468 hybrid contribution -0.464 -0.562 -1.389 1.569 sum -17.877 -5.560 16.511 24.962 Atomic orbital electron populations 1.23560 0.77991 1.05876 1.02813 1.90586 1.22999 1.08255 1.97454 1.47627 1.05470 0.99006 1.76872 1.21437 0.79953 0.92417 0.74754 1.90724 1.61704 1.42274 1.50949 1.21305 0.95422 0.90032 1.03175 1.21703 0.93662 0.96540 1.02973 1.21505 0.98860 0.89675 0.88864 1.47353 1.06823 1.53347 1.29188 1.16191 0.84818 0.78977 0.80380 1.90837 1.15759 1.68245 1.78106 1.45180 1.10680 1.59714 1.21900 1.20358 0.90605 0.95432 0.86169 1.19026 0.98312 0.86757 0.94983 1.20755 0.92713 1.29306 1.11343 0.91648 1.25690 0.94976 0.97725 0.99281 1.70093 1.04577 1.44992 1.34867 0.85738 0.78152 0.79220 0.79673 1.19976 1.22169 1.18753 1.22670 0.97328 1.02729 0.98888 1.22889 0.94840 1.04115 0.98555 1.22037 0.77848 0.96956 1.04495 1.22085 1.03090 0.95194 0.95936 0.91220 0.86137 0.90672 0.72846 0.83032 0.94193 0.89232 0.91546 0.87941 0.75593 0.95600 0.95226 0.93238 0.91378 0.91460 0.89045 0.89017 0.86658 0.89734 0.93328 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 11.30 113.37 1.28 1.23 16 2 O -0.19 -3.64 11.47 -21.40 -0.25 -3.89 16 3 N -0.58 -8.71 6.28 -173.53 -1.09 -9.80 16 4 C 0.53 11.12 7.30 87.66 0.64 11.76 16 5 O -0.58 -19.22 16.38 14.37 0.24 -18.99 16 6 C -0.08 -1.11 2.49 -11.51 -0.03 -1.14 16 7 C -0.11 -2.34 4.65 30.67 0.14 -2.20 16 8 C 0.13 3.02 6.42 86.36 0.55 3.58 16 9 N -0.63 -16.39 2.97 -836.06 -2.48 -18.87 16 10 C 0.69 26.54 8.29 179.06 1.49 28.02 16 11 O -0.65 -31.07 15.76 -3.99 -0.06 -31.13 16 12 N -0.72 -27.39 5.37 -478.53 -2.57 -29.96 16 13 C 0.20 9.46 5.53 86.38 0.48 9.94 16 14 C 0.01 0.47 1.32 -52.93 -0.07 0.40 16 15 C -0.50 -25.61 8.82 25.60 0.23 -25.39 16 16 H 0.07 3.18 7.83 -2.91 -0.02 3.16 16 17 C 0.02 1.28 5.22 84.66 0.44 1.72 16 18 N -0.91 -52.23 12.60 21.45 0.27 -51.96 16 19 Si 0.95 42.64 29.55 68.60 2.03 44.67 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 C -0.18 -7.86 9.88 30.59 0.30 -7.56 16 24 C -0.17 -6.20 9.78 30.59 0.30 -5.90 16 25 C 0.11 1.67 6.46 86.51 0.56 2.23 16 26 C -0.12 -1.65 5.28 30.82 0.16 -1.49 16 27 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.43 2.16 7.94 -92.71 -0.74 1.43 16 31 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 1.16 8.13 -2.39 -0.02 1.14 16 33 H 0.09 1.81 8.07 -2.39 -0.02 1.79 16 34 H 0.07 1.96 7.04 -2.38 -0.02 1.94 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.41 12.92 5.87 -92.71 -0.54 12.37 16 37 H 0.03 1.27 7.87 -2.38 -0.02 1.25 16 38 H 0.03 1.68 7.26 -2.39 -0.02 1.66 16 39 H 0.26 14.42 8.32 -92.71 -0.77 13.65 16 40 H 0.07 2.93 8.06 -2.39 -0.02 2.91 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 44 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.41 5.56 -2.39 -0.01 1.40 16 46 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.12 0.58 7.52 -2.39 -0.02 0.56 16 Total: -1.00 -83.93 385.31 2.27 -81.66 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.29 Total: 23.06 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 6.47 Total: 15.20 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -5.87 Total: -110.59 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.07 Total: -54.01 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -83.93 2.27 -81.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872993917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.691 kcal (2) G-P(sol) polarization free energy of solvation -83.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds