Wall clock time and date at job start Fri Apr 10 2020 18:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46938 * 2 1 4 4 C 1.52998 * 109.47434 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47388 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46892 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00154 * 179.97438 * 7 6 5 9 9 O 1.21348 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.49450 * 120.00032 * 180.02562 * 8 7 6 11 11 O 1.21356 * 119.99981 * 353.51350 * 10 8 7 12 12 N 1.34774 * 120.00149 * 173.78998 * 10 8 7 13 13 C 1.47074 * 120.88489 * 180.82986 * 12 10 8 14 14 C 1.53700 * 108.27666 * 128.75482 * 13 12 10 15 15 N 1.46902 * 109.25471 * 54.08571 * 14 13 12 16 16 C 1.46896 * 110.99756 * 172.60834 * 15 14 13 17 17 C 1.50697 * 109.47435 * 294.29945 * 16 15 14 18 18 H 1.08007 * 119.99537 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00581 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99549 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00075 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47394 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46973 * 119.99955 * 21 19 17 24 24 H 1.48499 * 109.46712 * 239.99581 * 21 19 17 25 25 C 1.46893 * 111.26804 * 296.75687 * 15 14 13 26 26 C 1.47082 * 120.87694 * 1.11057 * 12 10 8 27 27 H 1.09001 * 109.47490 * 59.99917 * 1 2 3 28 28 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47278 * 299.99566 * 1 2 3 30 30 H 1.08997 * 109.46991 * 239.99986 * 2 1 3 31 31 H 1.08996 * 109.47103 * 119.99912 * 2 1 3 32 32 H 1.09009 * 109.47146 * 59.99875 * 3 2 1 33 33 H 1.09005 * 109.47592 * 300.00256 * 3 2 1 34 34 H 1.09001 * 109.47226 * 59.99557 * 4 3 2 35 35 H 1.09005 * 109.46882 * 300.00620 * 4 3 2 36 36 H 1.08997 * 109.47635 * 59.99917 * 5 4 3 37 37 H 1.08996 * 109.46854 * 299.99601 * 5 4 3 38 38 H 1.09003 * 109.47166 * 60.00268 * 6 5 4 39 39 H 1.09001 * 109.47490 * 299.99689 * 6 5 4 40 40 H 0.97003 * 119.99969 * 0.02562 * 7 6 5 41 41 H 1.08996 * 109.63545 * 248.52272 * 13 12 10 42 42 H 1.09000 * 109.62802 * 9.11122 * 13 12 10 43 43 H 1.09001 * 109.64614 * 294.08434 * 14 13 12 44 44 H 1.09001 * 109.41940 * 173.95105 * 14 13 12 45 45 H 1.09000 * 109.47800 * 54.30221 * 16 15 14 46 46 H 1.09008 * 109.46958 * 174.30245 * 16 15 14 47 47 H 0.97005 * 119.99532 * 180.02562 * 20 19 17 48 48 H 1.09006 * 109.49533 * 303.14448 * 25 15 14 49 49 H 1.08999 * 109.49656 * 183.06504 * 25 15 14 50 50 H 1.08992 * 109.62979 * 350.89963 * 26 12 10 51 51 H 1.09003 * 109.62769 * 111.48017 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 7 6.0982 4.2663 0.0000 8 6 7.4233 4.5126 0.0005 9 8 8.2119 3.5903 0.0005 10 6 7.9214 5.9217 0.0011 11 8 7.1392 6.8418 -0.1176 12 7 9.2400 6.1703 0.1279 13 6 9.7495 7.5498 0.1491 14 6 10.6552 7.7102 1.3805 15 7 11.6893 6.6670 1.3605 16 6 12.6803 6.8878 2.4221 17 6 13.4388 8.1600 2.1445 18 1 13.2074 8.7462 1.2673 19 6 14.4282 8.5758 3.0102 20 7 14.7095 7.8623 4.0785 21 14 15.3678 10.1532 2.6663 22 1 14.8639 10.7661 1.4111 23 1 15.1734 11.1007 3.7931 24 1 16.8135 9.8465 2.5213 25 6 11.0964 5.3270 1.4643 26 6 10.2081 5.0690 0.2425 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 3.7169 3.3985 0.8904 37 1 3.7162 3.3994 -0.8895 38 1 5.9733 2.3717 -0.8903 39 1 5.9733 2.3709 0.8898 40 1 5.4679 5.0036 0.0004 41 1 10.3223 7.7426 -0.7580 42 1 8.9146 8.2475 0.2137 43 1 10.0596 7.6146 2.2884 44 1 11.1284 8.6919 1.3569 45 1 12.1718 6.9702 3.3826 46 1 13.3759 6.0489 2.4500 47 1 15.4053 8.1550 4.6877 48 1 10.4947 5.2646 2.3711 49 1 11.8895 4.5802 1.5015 50 1 9.6766 4.1259 0.3688 51 1 10.8241 5.0280 -0.6558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874977024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:11 Heat of formation + Delta-G solvation = -70.174596 kcal Electronic energy + Delta-G solvation = -27307.731183 eV Core-core repulsion = 23434.982206 eV Total energy + Delta-G solvation = -3872.748976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92437 -38.88554 -37.58984 -37.18996 -35.50384 -34.30100 -32.62896 -32.35936 -30.74554 -28.91552 -28.34030 -25.99244 -24.99230 -23.70749 -22.81560 -21.89560 -21.75121 -21.40965 -20.60576 -19.34280 -17.55588 -17.03037 -16.66502 -16.34465 -16.05942 -15.89146 -15.18690 -15.09046 -14.73200 -14.47436 -14.31730 -14.23978 -14.01233 -13.76666 -13.57925 -13.49201 -13.26475 -12.82043 -12.72195 -12.40556 -12.09350 -12.04484 -11.96716 -11.44624 -11.41086 -11.29365 -11.25436 -11.10012 -10.96952 -10.95300 -10.81313 -10.72388 -10.56245 -10.56020 -9.90093 -9.53416 -9.34529 -8.96218 -8.58243 -8.44930 -7.30126 -6.05056 -4.06829 1.36945 2.26672 3.16732 3.29993 3.37578 3.41957 3.45674 4.17330 4.24167 4.38416 4.40791 4.50012 4.62299 4.73322 4.86642 4.89530 4.97359 5.15056 5.26296 5.29497 5.30652 5.32021 5.36030 5.43702 5.45671 5.51369 5.59914 5.61500 5.63833 5.69734 5.75020 5.81481 5.85697 5.85951 5.90748 5.94522 6.30736 6.36769 6.43804 6.51934 6.59733 6.89831 7.24297 7.29547 7.36919 7.67945 7.76434 7.95990 8.03600 8.14078 8.49815 9.00733 9.57766 11.05796 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.035554 B = 0.001742 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.355942 B =16068.512279 C =16398.388896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.133 4.133 6 C 0.115 3.885 7 N -0.702 5.702 8 C 0.512 3.488 9 O -0.507 6.507 10 C 0.501 3.499 11 O -0.537 6.537 12 N -0.568 5.568 13 C 0.110 3.890 14 C 0.052 3.948 15 N -0.537 5.537 16 C 0.192 3.808 17 C -0.509 4.509 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.042 3.958 26 C 0.059 3.941 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.413 0.587 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.025 0.975 44 H 0.099 0.901 45 H -0.009 1.009 46 H 0.032 0.968 47 H 0.261 0.739 48 H 0.024 0.976 49 H 0.082 0.918 50 H 0.148 0.852 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.219 -13.420 -8.868 29.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.171 4.171 6 C -0.008 4.008 7 N -0.355 5.355 8 C 0.294 3.706 9 O -0.384 6.384 10 C 0.283 3.717 11 O -0.415 6.415 12 N -0.301 5.301 13 C -0.012 4.012 14 C -0.077 4.077 15 N -0.262 5.262 16 C 0.068 3.932 17 C -0.547 4.547 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.087 4.087 26 C -0.062 4.062 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.249 0.751 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.043 0.957 44 H 0.117 0.883 45 H 0.009 0.991 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.042 0.958 49 H 0.100 0.900 50 H 0.165 0.835 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.686 -13.574 -9.218 29.641 hybrid contribution 0.086 1.162 0.796 1.411 sum -24.600 -12.412 -8.423 28.813 Atomic orbital electron populations 1.21782 0.95915 1.01614 1.01816 1.21539 0.95865 0.96866 1.02105 1.21620 0.95002 0.96925 1.02249 1.21513 0.95664 0.95604 1.02737 1.21831 0.93703 0.98346 1.03236 1.21532 0.94154 0.82015 1.03074 1.45819 1.06626 1.09929 1.73138 1.20353 0.83154 0.89989 0.77134 1.90379 1.53012 1.46363 1.48690 1.19887 0.83422 0.88957 0.79391 1.90728 1.55007 1.45543 1.50218 1.48191 1.05119 1.09508 1.67233 1.22157 0.97698 0.81210 1.00150 1.22410 0.92372 0.98508 0.94389 1.62117 1.13582 0.99713 1.50831 1.19738 0.89093 0.97747 0.86664 1.21189 1.17965 1.07050 1.08528 0.91739 1.24995 0.97133 0.97424 0.95035 1.69973 1.31995 1.38685 1.13070 0.86439 0.79693 0.83087 0.78189 1.19615 1.21134 1.21013 1.22415 0.97119 0.93667 0.95543 1.23384 0.91442 0.92092 0.99280 0.92771 0.92810 0.92757 0.92007 0.91982 0.91877 0.91907 0.91499 0.91472 0.90966 0.90980 0.90823 0.90782 0.75089 0.90221 0.89177 0.95690 0.88291 0.99123 0.94969 0.92956 0.95769 0.89957 0.83541 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.13 -0.58 5.93 -26.73 -0.16 -0.74 16 3 C -0.12 -0.55 5.21 -26.73 -0.14 -0.69 16 4 C -0.12 -0.55 5.21 -26.73 -0.14 -0.69 16 5 C -0.13 -0.69 5.33 -26.73 -0.14 -0.83 16 6 C 0.12 0.86 5.67 -4.04 -0.02 0.84 16 7 N -0.70 -6.80 5.55 -60.73 -0.34 -7.14 16 8 C 0.51 6.70 7.81 -11.58 -0.09 6.61 16 9 O -0.51 -7.36 13.03 5.50 0.07 -7.29 16 10 C 0.50 7.62 7.77 -11.59 -0.09 7.53 16 11 O -0.54 -8.81 15.95 5.49 0.09 -8.72 16 12 N -0.57 -9.15 3.00 -172.69 -0.52 -9.67 16 13 C 0.11 1.81 6.62 -3.37 -0.02 1.78 16 14 C 0.05 1.02 5.47 -3.46 -0.02 1.00 16 15 N -0.54 -11.53 4.62 -235.47 -1.09 -12.61 16 16 C 0.19 4.99 4.72 -4.98 -0.02 4.96 16 17 C -0.51 -14.09 8.41 -34.44 -0.29 -14.38 16 18 H 0.06 1.76 7.13 -52.48 -0.37 1.38 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 21 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 26 C 0.06 0.94 6.35 -3.60 -0.02 0.91 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.41 3.53 7.96 -40.82 -0.32 3.21 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.09 1.42 7.07 -51.93 -0.37 1.05 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 2.02 6.67 -51.93 -0.35 1.68 16 45 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 46 H 0.03 0.89 7.97 -51.92 -0.41 0.47 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.08 1.47 7.99 -51.93 -0.41 1.05 16 50 H 0.15 2.26 3.93 -56.51 -0.22 2.03 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -31.40 405.36 -10.08 -41.48 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -9.21 Total: -1.00 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -0.91 Total: 8.21 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -1.21 Total: -55.24 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.16 Total: -16.01 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.40 -10.08 -41.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874977024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.699 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds