Wall clock time and date at job start Fri Apr 10 2020 18:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46938 * 2 1 4 4 C 1.52998 * 109.47434 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47388 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46892 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00154 * 179.97438 * 7 6 5 9 9 O 1.21348 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.49450 * 120.00032 * 180.02562 * 8 7 6 11 11 O 1.21356 * 119.99981 * 353.51350 * 10 8 7 12 12 N 1.34774 * 120.00149 * 173.78998 * 10 8 7 13 13 C 1.47074 * 120.88489 * 180.82986 * 12 10 8 14 14 C 1.53700 * 108.27666 * 128.75482 * 13 12 10 15 15 N 1.46902 * 109.25471 * 54.08571 * 14 13 12 16 16 C 1.46896 * 110.99756 * 172.60834 * 15 14 13 17 17 C 1.50697 * 109.47435 * 294.29945 * 16 15 14 18 18 H 1.08007 * 119.99537 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00581 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99549 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00075 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47394 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46973 * 119.99955 * 21 19 17 24 24 H 1.48499 * 109.46712 * 239.99581 * 21 19 17 25 25 C 1.46893 * 111.26804 * 296.75687 * 15 14 13 26 26 C 1.47082 * 120.87694 * 1.11057 * 12 10 8 27 27 H 1.09001 * 109.47490 * 59.99917 * 1 2 3 28 28 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47278 * 299.99566 * 1 2 3 30 30 H 1.08997 * 109.46991 * 239.99986 * 2 1 3 31 31 H 1.08996 * 109.47103 * 119.99912 * 2 1 3 32 32 H 1.09009 * 109.47146 * 59.99875 * 3 2 1 33 33 H 1.09005 * 109.47592 * 300.00256 * 3 2 1 34 34 H 1.09001 * 109.47226 * 59.99557 * 4 3 2 35 35 H 1.09005 * 109.46882 * 300.00620 * 4 3 2 36 36 H 1.08997 * 109.47635 * 59.99917 * 5 4 3 37 37 H 1.08996 * 109.46854 * 299.99601 * 5 4 3 38 38 H 1.09003 * 109.47166 * 60.00268 * 6 5 4 39 39 H 1.09001 * 109.47490 * 299.99689 * 6 5 4 40 40 H 0.97003 * 119.99969 * 0.02562 * 7 6 5 41 41 H 1.08996 * 109.63545 * 248.52272 * 13 12 10 42 42 H 1.09000 * 109.62802 * 9.11122 * 13 12 10 43 43 H 1.09001 * 109.64614 * 294.08434 * 14 13 12 44 44 H 1.09001 * 109.41940 * 173.95105 * 14 13 12 45 45 H 1.09000 * 109.47800 * 54.30221 * 16 15 14 46 46 H 1.09008 * 109.46958 * 174.30245 * 16 15 14 47 47 H 0.97005 * 119.99532 * 180.02562 * 20 19 17 48 48 H 1.09006 * 109.49533 * 303.14448 * 25 15 14 49 49 H 1.08999 * 109.49656 * 183.06504 * 25 15 14 50 50 H 1.08992 * 109.62979 * 350.89963 * 26 12 10 51 51 H 1.09003 * 109.62769 * 111.48017 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 7 6.0982 4.2663 0.0000 8 6 7.4233 4.5126 0.0005 9 8 8.2119 3.5903 0.0005 10 6 7.9214 5.9217 0.0011 11 8 7.1392 6.8418 -0.1176 12 7 9.2400 6.1703 0.1279 13 6 9.7495 7.5498 0.1491 14 6 10.6552 7.7102 1.3805 15 7 11.6893 6.6670 1.3605 16 6 12.6803 6.8878 2.4221 17 6 13.4388 8.1600 2.1445 18 1 13.2074 8.7462 1.2673 19 6 14.4282 8.5758 3.0102 20 7 14.7095 7.8623 4.0785 21 14 15.3678 10.1532 2.6663 22 1 14.8639 10.7661 1.4111 23 1 15.1734 11.1007 3.7931 24 1 16.8135 9.8465 2.5213 25 6 11.0964 5.3270 1.4643 26 6 10.2081 5.0690 0.2425 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 3.7169 3.3985 0.8904 37 1 3.7162 3.3994 -0.8895 38 1 5.9733 2.3717 -0.8903 39 1 5.9733 2.3709 0.8898 40 1 5.4679 5.0036 0.0004 41 1 10.3223 7.7426 -0.7580 42 1 8.9146 8.2475 0.2137 43 1 10.0596 7.6146 2.2884 44 1 11.1284 8.6919 1.3569 45 1 12.1718 6.9702 3.3826 46 1 13.3759 6.0489 2.4500 47 1 15.4053 8.1550 4.6877 48 1 10.4947 5.2646 2.3711 49 1 11.8895 4.5802 1.5015 50 1 9.6766 4.1259 0.3688 51 1 10.8241 5.0280 -0.6558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874977024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:11 Heat of formation + Delta-G solvation = -91.110189 kcal Electronic energy + Delta-G solvation = -27308.639018 eV Core-core repulsion = 23434.982206 eV Total energy + Delta-G solvation = -3873.656812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07128 -40.07098 -39.01646 -37.76309 -36.41348 -35.66480 -34.38399 -33.16471 -32.18519 -30.26803 -29.32598 -27.56077 -26.12672 -24.82055 -24.14033 -23.39481 -22.40872 -21.98243 -21.67142 -20.61996 -18.80961 -18.40364 -18.17610 -17.39719 -17.04781 -16.79992 -16.58538 -16.11233 -16.06396 -15.92169 -15.56696 -15.42438 -15.08535 -14.99596 -14.62236 -14.33359 -14.15169 -13.98261 -13.84224 -13.59369 -13.17948 -13.15380 -12.83564 -12.75313 -12.59491 -12.55507 -12.39746 -12.35327 -12.23672 -12.06064 -11.79552 -11.76621 -11.68118 -11.49041 -11.32917 -11.32272 -10.63806 -10.38299 -10.19738 -9.93099 -9.09182 -8.21044 -6.31288 0.25006 1.20699 1.42115 1.42947 1.56412 2.03417 2.35817 2.41759 3.11366 3.18488 3.24526 3.72493 3.92437 3.98937 4.01103 4.07502 4.19636 4.21457 4.28698 4.33214 4.39598 4.45700 4.52677 4.55222 4.66286 4.74727 4.80965 4.83978 4.89768 4.89822 4.94045 4.98914 5.08176 5.09512 5.10754 5.18525 5.22000 5.25348 5.27476 5.38227 5.43036 5.49838 5.55415 5.63251 5.91495 6.02058 6.14082 6.26839 6.54966 6.61393 6.84087 6.85880 7.38696 8.90438 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.035554 B = 0.001742 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.355942 B =16068.512279 C =16398.388896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.115 4.115 5 C -0.125 4.125 6 C 0.114 3.886 7 N -0.684 5.684 8 C 0.513 3.487 9 O -0.524 6.524 10 C 0.502 3.498 11 O -0.548 6.548 12 N -0.577 5.577 13 C 0.121 3.879 14 C 0.055 3.945 15 N -0.540 5.540 16 C 0.207 3.793 17 C -0.523 4.523 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.041 3.959 26 C 0.073 3.927 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.420 0.580 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.013 0.987 44 H 0.086 0.914 45 H -0.040 1.040 46 H 0.008 0.992 47 H 0.264 0.736 48 H 0.016 0.984 49 H 0.084 0.916 50 H 0.160 0.840 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.503 -13.240 -10.258 31.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.009 4.009 7 N -0.337 5.337 8 C 0.294 3.706 9 O -0.403 6.403 10 C 0.285 3.715 11 O -0.427 6.427 12 N -0.310 5.310 13 C -0.001 4.001 14 C -0.073 4.073 15 N -0.265 5.265 16 C 0.081 3.919 17 C -0.561 4.561 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.088 4.088 26 C -0.048 4.048 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.258 0.742 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.031 0.969 44 H 0.105 0.895 45 H -0.023 1.023 46 H 0.026 0.974 47 H 0.073 0.927 48 H 0.034 0.966 49 H 0.103 0.897 50 H 0.176 0.824 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.032 -13.404 -10.627 31.149 hybrid contribution 0.379 1.043 1.245 1.668 sum -25.652 -12.361 -9.381 29.980 Atomic orbital electron populations 1.21791 0.95833 1.01755 1.01843 1.21547 0.95967 0.96915 1.02054 1.21594 0.94799 0.96877 1.02303 1.21489 0.95740 0.95212 1.02829 1.21778 0.91800 0.98827 1.03829 1.21714 0.95650 0.80465 1.03030 1.45835 1.05456 1.11306 1.71075 1.19968 0.84179 0.88650 0.77784 1.90350 1.53605 1.46178 1.50132 1.20261 0.82821 0.89950 0.78459 1.90719 1.55137 1.46293 1.50527 1.48236 1.05710 1.09188 1.67821 1.21991 0.97426 0.82039 0.98669 1.22378 0.92044 0.97293 0.95635 1.62053 1.14134 1.01711 1.48612 1.19398 0.89471 0.96456 0.86591 1.21492 1.18287 1.07653 1.08656 0.91442 1.25921 0.98087 1.00951 0.94667 1.70100 1.32732 1.40626 1.14106 0.85311 0.78082 0.78654 0.78430 1.18447 1.20601 1.20524 1.22506 0.97488 0.92025 0.96750 1.23317 0.91024 0.92483 0.97934 0.92671 0.92655 0.92800 0.91975 0.92134 0.91927 0.91737 0.91305 0.91557 0.90535 0.90241 0.90664 0.91013 0.74237 0.89288 0.88138 0.96852 0.89534 1.02281 0.97360 0.92716 0.96565 0.89724 0.82425 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.13 -1.00 5.93 30.59 0.18 -0.82 16 3 C -0.12 -0.88 5.21 30.59 0.16 -0.72 16 4 C -0.11 -0.86 5.21 30.59 0.16 -0.70 16 5 C -0.12 -1.01 5.33 30.59 0.16 -0.84 16 6 C 0.11 1.47 5.67 86.38 0.49 1.96 16 7 N -0.68 -11.86 5.55 -464.40 -2.58 -14.43 16 8 C 0.51 12.54 7.81 87.27 0.68 13.22 16 9 O -0.52 -14.34 13.03 -3.24 -0.04 -14.38 16 10 C 0.50 14.47 7.77 87.27 0.68 15.15 16 11 O -0.55 -17.04 15.95 -3.26 -0.05 -17.09 16 12 N -0.58 -17.88 3.00 -818.63 -2.46 -20.33 16 13 C 0.12 3.85 6.62 86.51 0.57 4.42 16 14 C 0.06 2.17 5.47 86.54 0.47 2.65 16 15 N -0.54 -23.54 4.62 -898.88 -4.15 -27.69 16 16 C 0.21 11.11 4.72 85.56 0.40 11.52 16 17 C -0.52 -29.40 8.41 25.60 0.22 -29.18 16 18 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 19 C 0.00 0.10 5.46 84.65 0.46 0.56 16 20 N -0.94 -56.36 13.29 21.45 0.28 -56.08 16 21 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 C 0.04 1.53 5.62 86.38 0.49 2.01 16 26 C 0.07 2.25 6.35 86.35 0.55 2.80 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.52 8.14 -2.38 -0.02 0.51 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.42 6.23 7.96 -92.71 -0.74 5.49 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.10 3.02 7.07 -2.39 -0.02 3.00 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.09 3.58 6.67 -2.39 -0.02 3.57 16 45 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 46 H 0.01 0.48 7.97 -2.38 -0.02 0.46 16 47 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 48 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 49 H 0.08 3.06 7.99 -2.39 -0.02 3.04 16 50 H 0.16 4.65 3.93 -74.93 -0.29 4.36 16 51 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -67.10 405.36 -0.70 -67.80 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.12 Total: 14.58 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 6.39 Total: 21.54 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -8.90 Total: -118.54 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.09 Total: -31.47 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.10 -0.70 -67.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874977024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.309 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds