Wall clock time and date at job start Fri Apr 10 2020 18:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48499 * 109.47153 * 240.00025 * 3 2 1 5 5 H 1.48502 * 109.46859 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46945 * 119.99936 * 3 2 1 7 7 C 1.37875 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99876 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00102 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99832 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.46895 * 109.46942 * 179.97438 * 13 11 10 15 15 C 1.46850 * 111.00121 * 66.05036 * 14 13 11 16 16 C 1.53028 * 109.52769 * 185.83886 * 15 14 13 17 17 C 1.53121 * 109.27681 * 300.81801 * 16 15 14 18 18 C 1.53119 * 109.16108 * 57.65337 * 17 16 15 19 19 H 1.09001 * 109.50063 * 62.32507 * 18 17 16 20 20 N 1.46902 * 109.50677 * 182.40370 * 18 17 16 21 21 C 1.46902 * 110.99776 * 273.28081 * 20 18 17 22 22 C 1.53178 * 109.54186 * 274.20401 * 21 20 18 23 23 C 1.53097 * 109.15920 * 183.15628 * 22 21 20 24 24 O 1.42901 * 109.41653 * 57.61234 * 23 22 21 25 25 C 1.42908 * 114.09486 * 298.83872 * 24 23 22 26 26 C 1.53089 * 109.41760 * 61.15843 * 25 24 23 27 27 C 1.46848 * 111.00039 * 190.25429 * 14 13 11 28 28 H 0.97004 * 120.00087 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46872 * 59.99974 * 9 7 2 30 30 H 1.09002 * 109.47065 * 300.00430 * 9 7 2 31 31 H 0.97006 * 119.99419 * 0.02562 * 10 9 7 32 32 H 1.09007 * 109.46932 * 60.00353 * 13 11 10 33 33 H 1.08995 * 109.46953 * 300.00286 * 13 11 10 34 34 H 1.09002 * 109.46074 * 65.81743 * 15 14 13 35 35 H 1.09001 * 109.45191 * 305.84828 * 15 14 13 36 36 H 1.09000 * 109.50681 * 180.87810 * 16 15 14 37 37 H 1.09003 * 109.53795 * 60.77418 * 16 15 14 38 38 H 1.08996 * 109.52451 * 297.75086 * 17 16 15 39 39 H 1.08999 * 109.52647 * 177.55708 * 17 16 15 40 40 H 1.00898 * 110.99566 * 37.23317 * 20 18 17 41 41 H 1.09004 * 109.61830 * 34.43126 * 21 20 18 42 42 H 1.09002 * 109.52438 * 303.05776 * 22 21 20 43 43 H 1.08997 * 109.52242 * 63.25050 * 22 21 20 44 44 H 1.09000 * 109.47765 * 177.59059 * 23 22 21 45 45 H 1.09001 * 109.48283 * 297.62300 * 23 22 21 46 46 H 1.09000 * 109.48035 * 301.17335 * 25 24 23 47 47 H 1.09001 * 109.48200 * 181.14110 * 25 24 23 48 48 H 1.08993 * 109.52533 * 182.48322 * 26 25 24 49 49 H 1.09006 * 109.52080 * 62.29676 * 26 25 24 50 50 H 1.09005 * 109.45774 * 54.15141 * 27 14 13 51 51 H 1.08999 * 109.46644 * 294.18366 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0015 11 6 1.7538 -4.8833 0.0019 12 8 0.5615 -5.1049 0.0019 13 6 2.7332 -6.0288 0.0022 14 7 1.9987 -7.3009 0.0032 15 6 1.2532 -7.4792 -1.2493 16 6 0.3886 -8.7383 -1.1552 17 6 1.2876 -9.9507 -0.8977 18 6 2.0887 -9.7187 0.3865 19 1 1.4049 -9.6279 1.2305 20 7 2.9961 -10.8521 0.6101 21 6 2.3215 -11.9291 1.3470 22 6 2.4222 -11.6615 2.8518 23 6 1.7862 -12.8275 3.6132 24 8 2.4406 -14.0450 3.2505 25 6 2.3389 -14.3711 1.8628 26 6 2.9970 -13.2671 1.0311 27 6 2.9040 -8.4311 0.2476 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8919 31 1 3.1568 -3.4353 0.0010 32 1 3.3598 -5.9707 0.8923 33 1 3.3598 -5.9712 -0.8878 34 1 1.9541 -7.5810 -2.0778 35 1 0.6147 -6.6120 -1.4183 36 1 -0.1528 -8.8789 -2.0908 37 1 -0.3224 -8.6319 -0.3358 38 1 1.9724 -10.0810 -1.7356 39 1 0.6722 -10.8436 -0.7867 40 1 3.3725 -11.1915 -0.2624 41 1 1.2726 -11.9720 1.0535 42 1 3.4705 -11.5694 3.1361 43 1 1.8958 -10.7382 3.0936 44 1 1.8930 -12.6629 4.6854 45 1 0.7283 -12.8937 3.3591 46 1 1.2882 -14.4575 1.5858 47 1 2.8438 -15.3184 1.6741 48 1 2.8818 -13.4921 -0.0291 49 1 4.0569 -13.2075 1.2786 50 1 3.4645 -8.2553 1.1658 51 1 3.5972 -8.5284 -0.5879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880210705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:18 Heat of formation + Delta-G solvation = -88.442518 kcal Electronic energy + Delta-G solvation = -27996.511106 eV Core-core repulsion = 24122.969973 eV Total energy + Delta-G solvation = -3873.541133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12537 -39.41329 -38.21769 -36.08180 -34.14321 -33.29741 -32.31357 -31.78690 -31.47894 -28.85048 -28.07789 -26.37667 -24.29343 -24.06375 -23.33374 -22.41324 -21.83244 -20.54681 -19.86319 -19.60259 -17.14241 -16.76265 -16.44165 -16.20785 -15.75029 -15.61412 -15.25584 -15.19637 -15.03206 -14.83454 -14.35789 -14.26105 -14.07872 -13.77463 -13.47637 -13.40678 -13.05127 -12.75702 -12.63121 -12.41551 -12.05795 -12.03713 -11.88709 -11.69224 -11.53227 -11.29666 -11.02451 -10.99010 -10.90584 -10.82944 -10.75009 -10.67509 -10.53680 -10.29684 -9.97415 -9.40388 -8.97681 -8.71962 -8.70449 -8.17519 -7.83556 -6.16102 -4.23076 3.25318 3.29973 3.31367 3.39005 3.41468 3.52381 3.99291 4.26570 4.29662 4.43715 4.47409 4.59536 4.66956 4.68929 4.79899 4.86795 4.89825 5.06843 5.12547 5.16979 5.19748 5.26388 5.29341 5.31069 5.38219 5.45043 5.49349 5.51025 5.55540 5.61977 5.64157 5.69009 5.72466 5.77677 5.87519 5.90832 6.01124 6.21483 6.31154 6.73074 6.80822 7.01549 7.08395 7.20963 7.34020 7.47061 7.53288 7.68586 7.98074 8.65445 8.80024 9.14712 9.43734 10.93979 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.001911 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.174403 B =14644.829606 C =14972.810207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.715 5.715 11 C 0.499 3.501 12 O -0.539 6.539 13 C 0.038 3.962 14 N -0.519 5.519 15 C 0.050 3.950 16 C -0.109 4.109 17 C -0.148 4.148 18 C 0.092 3.908 19 H 0.087 0.913 20 N -0.680 5.680 21 C 0.089 3.911 22 C -0.145 4.145 23 C 0.060 3.940 24 O -0.383 6.383 25 C 0.064 3.936 26 C -0.158 4.158 27 C 0.071 3.929 28 H 0.266 0.734 29 H 0.025 0.975 30 H 0.026 0.974 31 H 0.389 0.611 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.340 0.660 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.751 -27.620 0.499 28.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.365 5.365 11 C 0.283 3.717 12 O -0.417 6.417 13 C -0.094 4.094 14 N -0.244 5.244 15 C -0.078 4.078 16 C -0.148 4.148 17 C -0.187 4.187 18 C -0.018 4.018 19 H 0.105 0.895 20 N -0.310 5.310 21 C -0.021 4.021 22 C -0.183 4.183 23 C -0.017 4.017 24 O -0.302 6.302 25 C -0.013 4.013 26 C -0.197 4.197 27 C -0.058 4.058 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.222 0.778 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.159 0.841 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.112 0.888 48 H 0.089 0.911 49 H 0.100 0.900 50 H 0.099 0.901 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.756 -27.448 1.578 28.089 hybrid contribution 0.799 0.923 -1.653 2.055 sum 6.555 -26.525 -0.075 27.323 Atomic orbital electron populations 1.69967 1.06095 1.27388 1.48830 1.24956 0.94921 0.99439 0.94724 0.86474 0.79411 0.82335 0.78673 1.20109 1.21077 1.20054 1.21200 0.93228 0.90514 1.53283 0.91970 1.19068 0.88271 0.81895 0.97651 1.46458 1.11062 1.06122 1.72825 1.20299 0.89572 0.84067 0.77787 1.90621 1.16673 1.84520 1.49878 1.21974 0.95385 0.89445 1.02548 1.61454 1.26582 1.00334 1.36001 1.22280 0.96843 0.99939 0.88717 1.21465 0.97923 0.93248 1.02131 1.22318 0.99285 0.98738 0.98355 1.21579 0.92862 0.90045 0.97281 0.89470 1.60465 1.36393 1.08267 1.25885 1.21506 0.96199 0.89899 0.94508 1.22238 1.03073 0.98702 0.94291 1.22636 0.95422 0.83724 0.99944 1.87940 1.76765 1.40916 1.24584 1.22528 0.99719 0.97616 0.81483 1.22403 1.02003 0.94884 1.00361 1.21972 0.93394 0.89449 1.00984 0.92407 0.95676 0.95554 0.77839 0.88311 0.92555 0.95833 0.88190 0.91659 0.90789 0.92243 0.92363 0.84076 0.93586 0.90201 0.90656 0.88582 0.93311 0.93288 0.88751 0.91070 0.90008 0.90138 0.95140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.67 5.43 -5.19 -0.03 6.64 16 10 N -0.72 -14.95 5.55 -61.47 -0.34 -15.29 16 11 C 0.50 9.85 7.50 -10.99 -0.08 9.77 16 12 O -0.54 -12.75 14.35 5.56 0.08 -12.67 16 13 C 0.04 0.55 5.45 -4.98 -0.03 0.52 16 14 N -0.52 -7.30 4.39 -236.12 -1.04 -8.34 16 15 C 0.05 0.69 5.11 -3.84 -0.02 0.67 16 16 C -0.11 -1.26 6.09 -26.65 -0.16 -1.43 16 17 C -0.15 -1.37 5.25 -26.61 -0.14 -1.51 16 18 C 0.09 0.90 2.44 -67.63 -0.16 0.73 16 19 H 0.09 0.98 7.21 -51.93 -0.37 0.61 16 20 N -0.68 -5.53 6.07 -99.46 -0.60 -6.13 16 21 C 0.09 0.67 2.38 -67.53 -0.16 0.51 16 22 C -0.14 -1.16 5.62 -26.59 -0.15 -1.31 16 23 C 0.06 0.45 6.84 37.21 0.25 0.70 16 24 O -0.38 -3.41 10.77 -35.23 -0.38 -3.79 16 25 C 0.06 0.42 6.84 37.20 0.25 0.67 16 26 C -0.16 -0.99 5.40 -26.59 -0.14 -1.14 16 27 C 0.07 0.79 5.07 -3.83 -0.02 0.77 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 32 H 0.10 1.24 7.98 -51.92 -0.41 0.83 16 33 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 1.74 5.80 -51.93 -0.30 1.44 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 39 H 0.06 0.50 7.60 -51.93 -0.39 0.10 16 40 H 0.34 2.45 8.05 -39.29 -0.32 2.13 16 41 H 0.05 0.37 7.28 -51.93 -0.38 -0.01 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.64 7.56 -51.93 -0.39 0.25 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.08 0.90 8.01 -51.93 -0.42 0.49 16 51 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -31.88 395.21 -10.81 -42.69 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -9.20 Total: 4.95 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.01 Total: 2.18 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -1.25 Total: -55.13 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.30 Total: -16.47 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.88 -10.81 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880210705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.753 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds